LOCUS AF536942 7273 bp RNA linear VRL 26-AUG-2003 DEFINITION Barley mild mosaic virus segment RNA1, complete sequence. ACCESSION AF536942 VERSION AF536942.1 KEYWORDS . SOURCE Barley mild mosaic virus ORGANISM Barley mild mosaic virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae; Bymovirus. REFERENCE 1 (bases 1 to 7273) AUTHORS Lee,K., Choi,M. and Lee,W. TITLE Nucleotide sequence of barley mild mosaic virus RNA 1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 7273) AUTHORS Lee,K., Choi,M. and Lee,W. TITLE Direct Submission JOURNAL Submitted (09-AUG-2002) Department of Agricultural Biology, Bioresources Science College of Agriculture, Chonbuk National University, 664-14 1-ga, Deokjin-dong, Chonju, Chonbuk 561-756, Korea FEATURES Location/Qualifiers source 1..7273 /mol_type="genomic RNA" /db_xref="taxon:12466" /segment="RNA1" /organism="Barley mild mosaic virus" /host="barley cultivar baegdong" CDS 149..6934 /codon_start=1 /protein_id="AAQ10758.1" /translation="MEEFIPEVFYQNQVQSLKKILKSWKRGTSIYAYLAREQEVLAFL VLSPAHIAKLNKLLTEESARCALLAQNCETIEALAVVRQALQGVTLHFGDNGMEKGWL HMMKALDACLDESFSENAAALKKSIQAVGHKLIAAKNRIESCERSVNHLTTFQFAREY GLSTTYFEKLSNFGGHIRSFVWSSDSGEISQRPRKRNHHIRRAFRHSRATTGVSFGAT ASGSSVPSGLPARWCFNSAVFIWSLCGVLNLSMVVLQFTLKRHFGKFYFRYIMSGVLA ICAVCCVHLKNRKGPILQASQKDKRFIGILAFCITVIYMFDVDLADSLSNNLHKISRL VNLFLDDNRGFATPALDNLTDFTTILQSGTSSDDLKIVQDTLAVVLQVDDEDATQDDA IYDSDGLQTFKQWVSHNQLAGMQLARPLQYPCSNTYGLTADNVAELATSMAQEAKQWS QVVGHTGSGKSTRLPTAYANCLKGLAGRKKNVLVCEPTRAATVNVTSGISQNFGRLVY GRHEGWSNLGDKTIQVMTYGSALAAWKVDNKFLSQFDAVFLDESHLITTHALVFESIC QEATNVRKFYVSATPRDGKKCPEAVRRYEIKTVKSECSSIDTFVRSQEKENSLYVLKH DTVLVFLAGKAECDRAASNWNKLYSTNMYAYSLTGDNFTVAYENIVTRMLTDRIIVFC TNILETGVTLNVDCVVDFGFTMRPELDLVDKSLTLMRRRVTENERAQRIGRAGRLRTG HAICIGNPETRHDLVPPETLYEAALLSFVHGVQFYINEHFENAWIEGVTKSQASVMTQ FKLSPFLMRDIVRDDGAIPLSLHKILKDYTHRNTDLIGTKLSVMSHVYNSWPLYRTVH QSIFRGDSNVPQALKHARVPFNVSTAHDFPWENFAQACLEFQPRVLQVFSDSSSTSRI INLQIGKMHIVNSMEEVKININSYQRSAENLRSVKDSFESSIFRTKLLRGNPTGKITK RIETLLDNVRVLQQVHAKLEIIAYSGGEKLNMDKKSVDELNEIVELQSKNSLTAERLA RMIASNKNPAPISVNLFAESGGQMLGGLLVMVAAWFMDLVFWVSPRKQDDITIEGKGR AYNRDKRMGYDSYEEDEVRNKINKKFKERSTRFSNDSKPETSSKYRNLKQEFVNFYDL KTDANVLQAVFTAMDGAVLLQTEAPMADIDRVNRLLQEHFSDSDSQAVHEGLNTMVKC HLTMKDGRQFELDMEWHDPETVAKLGGEVGFRMNRDELRQVGATRYINPKAQTSAATL EGMTMKPMSSFTIDSAKMVGFIKTAKDTLNCILYGDWIIAPAHIQQGEGDITFIFQHT QFTTTTERLSSYGIRQFKGLDLVVIRRPQQIRAVKKDMRASILDTPTEIQMLYLSTKG GKYQVSTSAVCFPHYNNRWGHVISTAEGMCGCIVFNPTTNHIVGIHVSYNDTRRRNEF QAFTSDVLTTINAPGHEIPFSPWVFDWKFCGYTTKPRNLQSAPNTLERLNINATGFGF KLNAQEIKPAMLRSTESFSREFPDTQFKLIGEVKKGLIDKHTITGENPYFLEFLNTFK PYQWVQAFMDEYAPSILAYDAYFKDLKKYDRPPHASVFCKDTLTKAKHKMIKILEEAG MGRTLVRTTEQVLLDMAWTTSGGPLYHGKKIDIVQHLSDDELVQFSEACQQALITGTL DGVWNGSLKAELRSSQKIFERKTRVFTAAPITSLIAMKYYVDDFNKQFYKTHLKAPHT VGINKFNRGWQNLYEKLNKPGWTHGSGDGSRFDSSIDGFLFDVIKDIRKHFMDTEHHK QLDTIYEEIVNTKICLANGLVIQKNCGNNSGQPSTVVDNTLALMTSFLYAYARLTVDD TFELMDENFVFVCNGDDNKFAMSPSFMAKFGCDFSPFLSELGLTYEFDEATEDICENP YMSLTMVRTSFGIGFSLSIERIVAILQWSRAGGVLHAYLSGIAALFESFNTPKLFNLV HTYLLWLVTEHEEELFSMMELKDMFMPLPTREQIALLHYVGTGPIVEETYLQSGKDEP DPIVPPVSDTDLTNLAAAPPANTRSRAVVPRGTSDWNLPEPKMRMLGFKSKINIETLA DVPEGYMNTFASVATETQRRKWEETTRGDFGITDDEKWEKLLIAACIYFADNGTSPNF DEELTMEVNGGLNSIKEYPVRPFVVRAKKISTLRRIFRCYSIETKLMFVKLRPVPQWA IKHGCLDEIVFDFMIPDQFTSRTALETLKQTKLAAIGVGTSNSLLTSEQTNMRTTETR RRNDYDGHEALLR" /product="polyprotein" ORIGIN 1 aaaaataaaa caaaactaca acccaataca aacaacgaac aacaatcaac gaattcaaaa 61 ctcatcaaag catcatcgct cactagcgac aattcaaacg aactcaacaa caaaccaccc 121 ttcgaccaaa cgaactccaa ccatcaagat ggaagagttc attcccgaag tgttctacca 181 gaaccaggtt caaagtctca agaaaattct taaatcctgg aaacgtggca cttccattta 241 cgcgtatctt gctcgcgagc aagaggtcct agccttcctt gtgctgagtc ctgcgcacat 301 tgcaaagttg aacaaactac tcactgagga gtctgcacga tgcgctctac ttgcccagaa 361 ctgtgaaacc atcgaggctc tagccgttgt gcgacaagcc ctgcagggag tcacgttaca 421 ctttggtgac aatggcatgg agaaaggctg gctgcacatg atgaaagcac ttgacgcgtg 481 tcttgatgaa agctttagcg agaacgccgc tgcgctcaag aaaagcatcc aggcggttgg 541 tcacaagctc attgcggcaa aaaatcgcat cgaaagctgc gagcgatctg taaatcacct 601 tacaacgttt caatttgctc gcgaatatgg cttaagtacc acatacttcg aaaaattgtc 661 caatttcggt gggcatattc gaagttttgt gtggtccagc gactcaggag aaatttccca 721 aaggccaagg aaaagaaatc atcacatacg acgcgcattt cggcattcac gagctactac 781 tggggtgagt tttggtgcaa ctgcatctgg ctcctctgtt ccctctggtc tccccgcacg 841 ctggtgcttt aattccgcag ttttcatttg gagtctatgt ggtgtcctaa atttatccat 901 ggttgttttg caattcactc ttaagcgtca ttttggtaaa ttctacttcc gctatattat 961 gtctggtgtt ttagctattt gtgccgtttg ctgtgtgcat cttaaaaatc gaaaagggcc 1021 tatacttcaa gcctctcaaa aagataaacg tttcatagga atattagcct tctgtatcac 1081 tgtcatatat atgtttgatg tggatcttgc cgactcgctg agtaacaacc tccataagat 1141 atcccgtctc gtgaaccttt tcttggatga caaccgcgga ttcgcaacac ctgctcttga 1201 caatctaacc gatttcacaa caatccttca aagtggaaca tcgagtgacg acctaaagat 1261 tgttcaggac acgttggccg ttgttttaca agtcgacgat gaggacgcaa ctcaagatga 1321 cgcaatatac gattccgacg ggctccagac tttcaagcaa tgggtctctc acaaccaact 1381 agccggaatg caactcgcac gtccactaca atacccgtgc tccaacacct atggcctaac 1441 tgcagacaat gtcgcggaac tagccactag catggcacag gaagcgaagc agtggtcgca 1501 agttgtcggc cacactggct ccgggaagtc cacacggcta ccaactgcat acgccaactg 1561 tctcaaaggt ttggctgggc gaaagaaaaa tgtccttgtt tgcgaaccca ctagagctgc 1621 aactgttaat gtgaccagcg gcatttcgca aaatttcggc aggcttgttt acggacgaca 1681 tgagggttgg agcaaccttg gcgacaagac aatacaagtc atgacatacg gttccgcact 1741 cgcagcatgg aaagtcgaca acaaattctt aagccagttt gacgcagtgt ttcttgacga 1801 atcccacctc ataaccacgc atgcccttgt tttcgaaagc atctgccagg aagccactaa 1861 cgttcgcaag ttctatgtgt cagcaacacc ccgcgatggc aagaaatgcc cagaagccgt 1921 acgcagatat gaaatcaaaa ccgtgaaatc cgagtgcagt agtatcgaca ctttcgttcg 1981 gagccaggag aaggaaaact cgctttatgt tctcaaacac gacaccgtac tcgtctttct 2041 tgctggtaag gctgagtgcg atagagcagc aagcaactgg aacaagctgt actcgaccaa 2101 catgtacgca tactccctga caggcgataa cttcacagtg gcatatgaga atatcgtcac 2161 acgcatgctc actgatcgta tcatcgtttt ctgcaccaac attctggaaa ccggtgtcac 2221 cctcaacgta gattgcgttg ttgactttgg attcactatg cgtcccgagc tcgatcttgt 2281 cgacaaatcg ctcaccttaa tgcgacgccg agtcactgag aacgagcgcg cacagcgcat 2341 tgggcgtgca ggaaggctca gaaccggaca tgcaatctgc attggcaatc ccgagacgcg 2401 ccacgaccta gttccacccg aaactctcta cgaggcagct cttcttagct tcgtgcatgg 2461 cgtgcaattc tacatcaatg agcatttcga gaatgcctgg attgaaggtg tcacaaagtc 2521 ccaagcctct gtaatgacgc aattcaaact ttctcccttc cttatgcgtg acattgttcg 2581 cgatgatggc gcaataccac tatcactcca caagatactc aaggattaca cacaccgcaa 2641 caccgatctg ataggaacaa aactctccgt catgtcgcat gtctataact catggcctct 2701 atatcgtaca gtgcaccaat ccatcttccg tggagattcc aatgttccac aagcgctcaa 2761 acacgcacgc gtccctttca acgtcagcac cgcccatgat ttcccatggg aaaatttcgc 2821 acaggcatgt ctcgaattcc agccacgtgt tcttcaggtc ttcagtgaca gcagcagcac 2881 ttcgcgcata atcaacctcc agatcggtaa gatgcacatc gttaattcca tggaagaagt 2941 caagataaac ataaacagct accagcgctc tgcagaaaac ctacgctcag tcaaagacag 3001 ctttgagagc tccatctttc gaacaaaact gctccgtgga aatccaactg ggaagataac 3061 taagcgcatt gagactcttc ttgacaacgt gcgagtgctg caacaggtgc acgcgaagtt 3121 agagatcatc gcatactcag gtggagagaa actcaacatg gacaagaaat cagtcgacga 3181 acttaatgag attgtcgaac tccagagcaa gaattcactc actgccgaga ggctagcacg 3241 catgattgca tctaacaaga accccgctcc aatttctgtt aacctgtttg ctgaaagtgg 3301 cggacaaatg ctcggaggtc tcctagttat ggttgccgcc tggttcatgg acctcgtttt 3361 ctgggtttcc ccaaggaaac aggatgacat caccattgaa ggcaaaggta gggcatacaa 3421 ccgtgacaag cgcatggggt atgattccta cgaggaggac gaagtccgca acaagattaa 3481 caagaagttc aaagaacgca gcacaagatt ctccaacgac tccaagccgg aaacaagctc 3541 aaagtaccgg aatctgaagc aagaattcgt gaacttctat gatcttaaga ctgatgctaa 3601 cgtactacaa gccgtgttca ccgcgatgga tggagccgtt cttcttcaaa cggaagctcc 3661 aatggcggac attgaccgtg ttaacagact actccaggaa catttttcgg atagcgacag 3721 ccaagctgta cacgaaggtc tcaacaccat ggttaagtgc cacttaacca tgaaagacgg 3781 gagacagttt gagctcgaca tggaatggca cgatcccgaa actgttgcta agcttggagg 3841 cgaagttggt ttcagaatga acagagacga gctacgccag gttggagcca cacggtacat 3901 caacccaaaa gcgcaaacat ctgcagcgac acttgagggc atgaccatga aacccatgag 3961 ttctttcact attgatagtg caaagatggt tggcttcatc aagaccgcga aagacacact 4021 caactgcatt ctgtatggcg attggatcat agctcctgca catatacagc agggcgaagg 4081 ggacataaca ttcatcttcc aacacacaca gttcacaacc acaaccgagc gcttgtctag 4141 ttacggaatt cgacaattca aaggtcttga ccttgttgtc attcgacgtc ctcagcagat 4201 acgcgcggtc aagaaggaca tgcgcgctag cattcttgac acacccactg aaatacagat 4261 gttgtactta tcaaccaaag gcggcaagta ccaagtgtcc acgtccgctg tgtgcttccc 4321 acattacaac aaccgatggg gacatgtcat ttcaacggct gagggcatgt gtggctgcat 4381 tgtgttcaac cccaccacga accatattgt ggggattcac gtctcctaca atgacacgcg 4441 aagaaggaat gagtttcaag ctttcacaag tgatgttctc acaacgatca atgcacctgg 4501 acacgagata ccatttagcc catgggtctt cgattggaag ttttgcgggt acacaacaaa 4561 accacgaaac ttgcagagcg caccaaacac gcttgaacga ctcaacatca acgccacagg 4621 ttttggtttc aaactcaacg cgcaggagat caaacctgcc atgcttcgct ccacagaatc 4681 attctccagg gagtttccgg acacacagtt taagctcatc ggagaggtga agaagggact 4741 cattgataaa cacacgatta caggagagaa cccttatttc cttgaattcc tgaacacatt 4801 caaaccatac caatgggtgc aagctttcat ggacgagtac gcaccctcca tccttgccta 4861 cgacgcgtac ttcaaggact tgaagaagta tgataggccg ccgcacgcaa gtgtgttctg 4921 taaggacaca ttgactaaag ccaaacacaa gatgattaaa attctcgaag aggcaggtat 4981 gggaaggacc ctagtacgaa ccaccgagca agtcttgctt gacatggcgt ggaccacctc 5041 tggtggaccc ctataccatg gcaagaagat cgacattgtg caacacttat ctgatgatga 5101 gcttgtgcaa ttcagtgaag cctgccaaca ggctctcatc actggaacgc tagatggagt 5161 ctggaacgga tcactcaaag ccgagctacg ctcttcgcag aaaatcttcg agcggaaaac 5221 ccgtgttttc actgccgccc ccataacaag cctaattgcg atgaaatact acgtggatga 5281 tttcaacaaa caattctaca aaactcatct caaagcacca cacacagttg gcatcaacaa 5341 gtttaaccgc ggatggcaga atctctatga gaagcttaac aaacctggat ggacgcatgg 5401 gagtggggac ggctccaggt tcgacagctc tattgacgga tttctcttcg atgttatcaa 5461 agacattcga aagcacttca tggacacaga acaccacaag cagcttgaca caatctacga 5521 agaaattgtt aacacgaaga tatgcctagc gaatggttta gtcatccaaa agaattgcgg 5581 aaacaatagc gggcagccca gcaccgttgt cgacaacaca ctcgcactca tgacttcttt 5641 tctttacgcg tacgcccgac taactgtaga tgacaccttc gaactcatgg acgaaaactt 5701 cgttttcgtc tgcaatggcg acgacaacaa gttcgccatg tcacccagct tcatggcaaa 5761 gttcggatgc gatttttccc cattcctttc tgagctaggg ctaacctacg agttcgacga 5821 agccaccgaa gacatttgtg aaaaccccta catgtctttg acgatggttc gaacctcgtt 5881 tggcatcggc ttctctctct ccatcgaacg catcgttgca atcttgcaat ggagccgcgc 5941 tggtggagtc ctgcatgcct atctctctgg cattgccgct ctcttcgaat ccttcaacac 6001 acccaaactc ttcaacctcg tgcacacata cctcctctgg ctcgttacgg agcacgagga 6061 ggaactcttt tcaatgatgg aactcaagga catgttcatg cctctgccca ctagggaaca 6121 gatagccttg ttgcactacg taggcactgg gcccatcgtg gaagaaacat atctgcaatc 6181 aggaaaagat gaaccagacc ccattgttcc tccagtttct gacactgatc tcacaaactt 6241 ggctgcggca ccacccgcca acacaaggtc gcgcgccgtc gtcccccgtg ggaccagtga 6301 ctggaatttg cccgaaccca agatgcgcat gctaggtttc aagtccaaaa tcaacatcga 6361 aacgctcgcc gatgtccccg aagggtacat gaacaccttt gcgtccgttg caactgaaac 6421 gcaacgtagg aaatgggaag agaccacgcg tggtgatttt ggtatcaccg acgacgagaa 6481 gtgggagaag ctgctcattg ctgcttgcat atatttcgca gacaatggca cttcaccaaa 6541 cttcgatgaa gagctcacta tggaagtcaa tggcggtctc aactccatca aagaatatcc 6601 cgtccgccct tttgttgtca gggctaaaaa gatctccaca ctgcgcagga tttttcgttg 6661 ttactccatt gagacgaaac taatgttcgt gaaactgagg cccgtgccgc aatgggccat 6721 aaagcacggg tgccttgatg aaatcgtctt cgatttcatg atcccagacc agtttacttc 6781 cagaactgca ctcgaaacac tgaagcaaac caagcttgcc gccattggtg ttggcacaag 6841 caattctctc ctcacctccg agcagacgaa catgagaacc actgaaaccc gaaggcgcaa 6901 cgactatgat ggtcacgagg cgcttctccg gtaggtatct catgcggttt cattttcttt 6961 tcagcagtgc atttaaatac gcttttaatt acatcaagcg tcaagagttg ttcccgcttg 7021 cagctaatcc ttatggggtg gcactttgtg ttatgcaatg gacaattcaa tgacgcaatc 7081 aaccatcatt ggttggtgac aacgcagcaa gttctttctt ttcacatcaa gcgacctgca 7141 catcgcaccg cttacagcta atcctacctg agggtggcac tctgtgttat gtaatggaat 7201 gtgcaatctc gcaaccaacc gtcattggtt gatggtgcgg ctaaaacccg cactcctgta 7261 taccggaaag gtt //