LOCUS AJ242725 7263 bp RNA linear VRL 05-DEC-2000 DEFINITION Barley mild mosaic virus complete genomic RNA sequence, isolate Asl1. ACCESSION AJ242725 VERSION AJ242725.1 KEYWORDS 6K2 peptide; capsid protein; CI protein; core replicase; cylindrical inclusion protein; genome-binding protein; NIa-pro; NIa-VpG; NIb-pro; nuclear inclusion protein; P3 protein; RNA-dependent RNA polymerase; RNA1 polyprotein. SOURCE Barley mild mosaic virus ORGANISM Barley mild mosaic virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae; Bymovirus. REFERENCE 1 AUTHORS Subr,Z., Formitchewa,V.W. and Kuhne,T. TITLE The complete nucleotide sequence of RNA1 of barley mild mosaic virus (ASL1) and attempts at bacterial expression of the P3 protein JOURNAL J. Phytopathol. 146, 461-467 (2000) REFERENCE 2 (bases 1 to 7263) AUTHORS Subr,Z. TITLE Direct Submission JOURNAL Submitted (31-MAY-1999) Subr Z., Dpt. of Plant Virology, Institute of Virology, Dubravska 9, Bratislava, 84246, SLOVAKIA FEATURES Location/Qualifiers source 1..7263 /mol_type="genomic RNA" /db_xref="taxon:12466" /country="Germany" /isolate="Asl1" /organism="Barley mild mosaic virus" /host="barley" 5'UTR 1..148 CDS 149..6925 /db_xref="GOA:Q9WAA3" /db_xref="InterPro:IPR001205" /db_xref="InterPro:IPR001592" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR001730" /db_xref="InterPro:IPR007094" /db_xref="InterPro:IPR009003" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR013648" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014021" /db_xref="UniProtKB/TrEMBL:Q9WAA3" /codon_start=1 /protein_id="CAB44430.1" /translation="MEEFIPEVFYQNQVQSLKKILKSWKRDTSIYAYLAREQEVLAFL VLSPAHIAKLNKLLTEESARCALLAQNCETIEALAVVRQALQGVTLHFGDNGMEKGWL HMMKALDACLDESFSENAAALKKSIQAVGHKLIAAKNRIEGCERSVNHLTTFQFAREY GLSTTYFEKLSNIGGHIRSFVWSSDSGEIFPKLKRSSRTRRISTFTSYYWGEFWCNCI WFLCCCWSPARWCFNSAVFIWSLCGVLNLSMIVLQFALKRHFGRYYFRYIMSGVLAIC AVCCVHLKNRKGPILQASQKDKRFIGILAFCITVIYMFDVDLADALSNNLQKISRLVN LFLDDNRGFATPALDNLTDFTTILQSGTSSDDLKIVQDTLAVVLQVDDEDATQDDAIY DSDGLQTFKQWVSHNQLAGMQLARPLQYPCSNTYGLTADNVAELSASMAQEAKQWSQV VGHTGSGKSTRLPTAYANCLKGLAGRKKNVLVCEPTRAATVNVTSGISQNFGRLVYGR HEGWSNLGDKTIQVMTYGSALAAWKVDNKFLSQFDAVFLDESHLITTHALVFESICQE VTNIRKFYVSATPRDGKKCPEAVRRYEIKTVKSECSSVDTFVRSQEKTNSLYVLDHDT VLVFLAGKAECDRAASNWNKLYSTNMYAYSLTGDNFTMAYEKIVTEMLTKRTIVFCTN ILETGVTLNVDCVVDFGFTMRPELDLVDKSLTLMRRRVTENERAQRIGRAGRLRTGHA ICIGNPETRHDLVPPETLYEAALLSFVHGVQFYINEHFENAWIEGVTKAQASVMTQFK LSPFLMRDIVRDDGAIPLSLHKILKDYTHRNTDLIGTKLSVMSHVYNSWPLYRTVHQS IFRGDSNVPQTLRYARVPFNVSTAHDFPWEDFAQACLEFQPRVLQVFSDSSSTSRIIN LQIGKMHIVNSMEEVKININSYQPSAENLRSVKDSFESSIFRTKLLRGNPTGKITKRI ETLLDNVRVLQQIHAKLEMIAYSGGEKINMDKKSVDELNEIVELQSKNSLTAEELARI LHLTKPTSTFFNLFAERGRQMLVTLLVMVAASLMYLVFWVSPRKQDDITIEGKGRAYN RDKRMGYDSYEEDEVRNKINKKFKERSTRFSNDSKPETSSKYRNLKQEFVNFYDLKTD ANVLQAVFTAMDGAVLLQTENPMADIGHVNRLLQDHFEDSESQAVHEGLNTMVKCHLT MKDGRQFELDMEQHDPETVAKLGGEVGFRMNRDDLRQVGATRYINPRAQTSAATLEGM TMKPMSSFTIDSAKMVGFIKTAKDTLNCILYGDWIIAPAHIQQGEGDITFIFQHVQFT TTTERLASYGIRQFKGLDLVVIRRPQQIRAVKKDMRASILDTPTEIQMLYLSTKGGKY QVSTSAVCFPHYNNRWGHVISTAEGMCGCIVFNPTTNHIVGIHVSYNDTRRRNEFQAF TSDVLTTINAPGHEIPFSPWVFDWKFCGYTTKPRNMQSAPSTLERLNINATGFGFKLD AQEIKPAMLRSTESFSREFPDTQFKLIGEVKKGLIDKHTITGENPYFLEFLNTFKPYQ WVQAFMDEYAPSILAYDAYFKDLKKYDRPPHANVFCQDTLTKAKHKMISILEEAGMGR TLVRTTEQVLLDMAWTTSGGPLYHGKKIDIVQHLSDDELAQFSEACQQALITGTLDGV WNGSLKAELRSSQKILERKTRVFTAAPITSLIAMKYYVDDFNKQFYKTHLKAPHTVGI NKFNRGWQNLYEKLNKPGWTHGSGDGSRFDSSIDGFLFDVIKDIRKHFMDTEHHKELD TIYEEIVNTKICLANGLVIQKNCGNNSGQPSTVVDNTLALMTAFLYAYARLTGDHAFE LMDENFVFVCNGDDNKFSMSPSFMAKFGCDFSPFLSELGLTYEFDEATEDICENPYMS LTMVRTSFGIGFSLSIERIVAILQWSRAGGVLHAYLSGIAALFESFNTPKLFNLVHTY LLWLVTEHEEELFSMMELKDMFMPLPTREQIALLHYVGTEPIVEETFLQAGHEEPDPI VPPVPDTDLTNMAAAPPDNRKSRAVIPRGTSDWSLPEPKMRTLGFKSKINIETLANVP DGYMNTFASVATESQRRKWEEAARGDFGITDDEKWEKLLIAACIYFADNGTSPNFDEE LTMEVNGGLNSIKEYPVRPFVVRAKKISTLRRIFRCYSIETKLMFVKLRRVPHWAIKH GCLDEIVFDFMIPDQFTSRTALETLKQTKLAAIGVGTSNSLLTSEQTNMRTTETRRRN DYDGHEALLR" /product="RNA1 polyprotein" mat_peptide 149..1024 /product="P3 protein" mat_peptide 1226..3199 /product="cylindrical inclusion protein(CI)" mat_peptide 3200..3391 /product="putative 6K2 peptide" mat_peptide 3392..3928 /function="putative genome-binding protein" /product="nuclear inclusion protein (NIa-VpG)" mat_peptide 3929..4567 /product="nuclear inclusion protein (NIa-pro)" mat_peptide 4568..6169 /function="core replicase, RNA-dependent RNA polymerase" /product="nuclear inclusion protein (NIb-pro)" mat_peptide 6170..6922 /product="capsid protein" 3'UTR 6926..7263 ORIGIN 1 aaaaataaaa cttcactaca acccaataca aacaacgaac aacaaacaac gaatttgcaa 61 cccatcaaag caacattgcc cgctcgtagc aattcaacca aactcagcaa caaatcaccc 121 ttcgaccaaa cgaactctga ccattgatat ggaggagttc attcctgaag tgttctacca 181 gaaccaggtt caaagcctca agaagattct taaatcctgg aaacgcgaca cttctattta 241 cgcgtatctt gctcgcgagc aagaggtcct agccttcctt gtactgagtc ctgcacacat 301 tgccaaattg aacaaactac tcactgagga gtctgcacga tgcgccctgc ttgcccaaaa 361 ctgtgaaacc atcgaagctc tggccgttgt gcggcaagcc ctgcagggtg tcacgctaca 421 ctttggtgac aatggcatgg agaaaggctg gctgcacatg atgaaagcac ttgatgcgtg 481 ccttgacgaa agcttcagcg agaacgccgc cgcactcaag aaaagcatcc aggcggtcgg 541 tcacaagctt atcgcagcaa aaaaccgcat cgaaggttgc gagcgatctg taaatcacct 601 tacgacgttt caatttgctc gcgaatatgg cttaagtact acatacttcg aaaagttgtc 661 caatatcggt gggcatattc gaagttttgt gtggtccagc gactcaggag aaatcttccc 721 aaagctaaaa agatcatcac gtacgaggcg catctcgaca ttcacgagct actactgggg 781 tgaattttgg tgcaactgca tctggttcct ctgctgctgc tggtcccccg cacgctggtg 841 ctttaattcc gcagttttca tatggagcct gtgtggtgtt ttaaacttat ctatgattgt 901 tctacagttt gctcttaagc gtcactttgg tagatactat tttcgataca taatgtctgg 961 tgtcctagct atttgcgccg tttgttgtgt tcatcttaaa aacagaaaag ggcctatatt 1021 gcaagcctcc caaaaagata agcgttttat tggtatttta gctttctgca ttactgttat 1081 atacatgttt gatgttgatc ttgccgacgc gcttagtaat aatctccaga agatctcccg 1141 ccttgtgaat cttttccttg atgacaaccg tggatttgca acacctgccc tcgacaatct 1201 aaccgacttc acaacaatcc ttcaaagtgg aacatcaagt gacgacctga agattgttca 1261 agacacgttg gctgtagttt tgcaagtcga tgacgaggac gcaactcagg atgatgccat 1321 atatgattcc gatgggcttc agacttttaa acaatgggtc tcacacaacc agctagccgg 1381 aatgcaactt gcacgcccac tacaataccc ttgctcgaac acttatggtc taaccgcgga 1441 caacgttgca gaactatccg ccagcatggc acaggaagca aagcagtggt cacaagttgt 1501 tgggcacact ggttccggga agtccacacg actaccaact gcatacgcca actgcttgaa 1561 aggcttggcc ggacgaaaga aaaatgttct cgtttgcgaa cccacaagag ccgccactgt 1621 caatgtaact agcggtattt cgcagaattt tggcagactt gtttacgggc ggcatgaagg 1681 ctggagcaac ctcggcgata aaacaataca ggtcatgaca tatggttccg cacttgcagc 1741 atggaaagtc gacaacaaat tcctgagcca gtttgacgca gtatttcttg acgagtccca 1801 ccttataaca acgcacgccc ttgtctttga aagcatttgc caggaggtta caaacattcg 1861 caagttctat gtatcagcca caccccgcga tggtaagaag tgtccagagg ccgtgcgcag 1921 atatgaaatc aaaactgtaa aatctgagtg cagtagtgtc gacacttttg ttcgaagcca 1981 ggagaaaaca aactcgcttt acgttctcga ccacgacacc gtcctcgttt ttctcgctgg 2041 aaaggccgag tgtgacagag cagcaagcaa ctggaacaag ctctactcaa ccaacatgta 2101 cgcctactct ctaacaggtg acaacttcac aatggcatat gagaagattg ttacagaaat 2161 gctcactaaa cgcaccattg tcttctgcac gaacatcctg gaaaccggcg tcacccttaa 2221 cgtggactgc gttgtcgact tcggattcac catgcgtccc gagcttgatc ttgttgataa 2281 atcgctaacc ttgatgcgac gccgagtcac cgagaacgaa cgtgcacagc gcattgggcg 2341 cgcaggaaga ctcagaactg gacacgcaat ctgtattggc aatcccgaaa cgcgccacga 2401 cttagtcccg ccagaaacac tctacgaagc agctcttctt agcttcgtgc acggcgtgca 2461 attttacatt aacgaacatt tcgaaaacgc ctggattgaa ggtgtcacaa aggctcaagc 2521 ctccgtcatg acacaattca aactttctcc tttcctcatg cgtgatattg ttcgcgacga 2581 tggcgcaata ccactatcac tccacaagat actaaaggat tacacacacc gcaacaccga 2641 tctgatagga actaaactct ccgttatgtc gcatgtttat aattcatggc ctctttaccg 2701 aacagtgcac caatccatct tccgtggaga ttccaatgtt ccacaaacgc tcagatatgc 2761 acgcgtcccc tttaatgtta gcaccgctca tgattttcca tgggaagatt tcgcacaggc 2821 atgccttgaa ttccagccac gcgtccttca ggtcttcagt gacagcagca gcacttcgcg 2881 cataatcaac ctgcagattg ggaagatgca cattgtcaac tctatggaag aagttaagat 2941 aaacataaac agctaccagc cgtccgcaga aaacctacgc tcagttaaag acagcttcga 3001 aagctcgatc ttccgaacaa aactgcttcg tggaaaccca actgggaaga taactaagcg 3061 catcgagact ctccttgaca acgtgcgagt gctgcaacag atacacgcaa aactcgagat 3121 gattgcatac tcaggtggag agaaaatcaa catggacaag aaatcagttg acgagctaaa 3181 tgagattgtc gaactccaga gcaaaaactc actcactgcc gaggaactgg cgcgcatatt 3241 acacctgaca aaacccacct ccaccttctt caatctgttt gctgaacgtg gccggcaaat 3301 gctcgtcact ctcctggtta tggttgccgc ctcactcatg tatctcgttt tctgggtttc 3361 tcccaggaaa caggacgaca tcaccattga ggggaaaggc agggcataca accgtgacaa 3421 gcgcatgggg tacgactcct acgaggaaga cgaagttcgc aacaagatca acaaaaagtt 3481 caaagagcgc agcacaaggt tctccaatga ctccaagccg gaaacaagct cgaaataccg 3541 caatctgaag caagaatttg ttaacttcta tgatctcaaa accgatgcga acgtgctaca 3601 agccgtgttc actgcaatgg acggggccgt ccttcttcaa accgaaaatc caatggcaga 3661 cattggccat gtcaatagac tgctgcagga ccactttgaa gacagtgaga gccaagctgt 3721 gcatgagggc ctcaacacca tggtcaagtg ccacctaact atgaaagatg gaagacagtt 3781 tgagctcgac atggaacaac acgatcccga aactgtcgcc aaacttgggg gcgaggttgg 3841 tttcagaatg aacagagacg acttacgtca agttggagcc acacgataca tcaacccaag 3901 agcacaaaca tctgcagcga cgctcgaagg catgaccatg aaacccatga gttctttcac 3961 cattgacagc gcaaagatgg ttggcttcat caagaccgca aaagacacac tcaactgcat 4021 cctttacggc gactggatta tagctcctgc gcacatacag cagggcgagg gggacataac 4081 attcatcttc cagcacgtac aattcacgac cacaactgag cgtttagcta gctatggcat 4141 tcgacaattc aaaggtcttg accttgttgt catccggcgc cctcagcaga tacgcgcagt 4201 caagaaggac atgcgtgcta gcattctcga cacacccact gaaatacaaa tgctctactt 4261 gtccactaaa ggtggtaagt accaagtgtc cacgtccgct gtgtgctttc cacactacaa 4321 taaccgatgg ggacacgtca tttcaacagc agaaggcatg tgcggctgta ttgtattcaa 4381 ccccaccacg aaccacatcg ttggaatcca cgtctcctac aacgacacgc gcagaagaaa 4441 tgagtttcaa gctttcacaa gtgacgttct gacaacgatt aatgcacccg gacacgagat 4501 acctttcagc ccatgggtct tcgactggaa gttttgtggg tacacaacaa aaccacgaaa 4561 catgcaaagc gcaccgagca cactcgagcg actcaacatc aatgccacag gatttggttt 4621 caagctcgat gcacaggaga ttaagccagc catgcttcgt tccacagagt cgttctccag 4681 ggagtttcca gacacacagt ttaaactcat tggggaagtg aagaaaggac tcatcgacaa 4741 acacacaatc acaggagaga acccatactt ccttgaattc ctgaacacat tcaaaccata 4801 ccaatgggtg caggccttca tggacgagta cgcaccctcc atccttgcct atgatgcgta 4861 tttcaaagat ctgaagaaat atgataggcc accacacgca aatgttttct gtcaggacac 4921 actaaccaaa gctaaacata agatgatcag catcctcgag gaagcaggca tgggaaggac 4981 cctagtacga accaccgagc aggtcttgct tgacatggcg tggaccacct ccggtggacc 5041 cttgtaccat ggtaagaaga tcgacattgt gcaacacttg tctgacgacg agcttgcaca 5101 gttcagtgag gcctgccaac aggctcttat cactggaacg ctggatggag tctggaacgg 5161 atcactcaaa gccgagctgc gctcttcgca gaaaatcctc gaacggaaaa cccgcgtttt 5221 tactgctgca cccataacaa gcctcattgc gatgaaatac tatgtggatg atttcaacaa 5281 acagttctat aaaacccatc tcaaagcacc gcacacagtc ggaatcaaca agttcaaccg 5341 cggatggcag aatctgtatg agaagctcaa caaacctgga tggacgcatg ggagtgggga 5401 cggttccagg tttgacagtt ccattgatgg attccttttc gatgtcatca aggacattcg 5461 aaagcatttc atggacacgg aacaccacaa agaactcgac acaatctacg aagagatagt 5521 caacacgaag atatgtctgg cgaacggcct ggtcattcaa aagaattgcg ggaacaacag 5581 tgggcagcca agcactgttg tggacaacac actcgcactc atgacagctt ttctctacgc 5641 atatgcccgg ctcactggag atcacgcctt cgaactcatg gacgaaaact tcgtcttcgt 5701 ctgcaatggt gatgacaaca agttttccat gtcacctagc ttcatggcga agtttggatg 5761 cgatttctcc ccattcctct ctgagctcgg gctaacctac gaatttgatg aagcaactga 5821 agacatctgc gaaaacccct acatgtcctt gacgatggtc cgcacctcgt ttgggattgg 5881 tttctctctc tccattgagc gcatcgttgc aatcttgcag tggagtcgcg ccggtggagt 5941 cctgcatgcc tatctctctg gcattgccgc tcttttcgaa tccttcaaca cacccaaact 6001 cttcaatctc gtgcacacat atctcctttg gctcgtcaca gagcacgagg aggaactctt 6061 ctccatgatg gaactcaaag acatgttcat gcccttgccc actagggaac agatagcctt 6121 gctgcactac gttggaactg agcccatcgt ggaggaaaca tttctgcaag caggacacga 6181 agaaccagac cccatcgttc ccccagttcc tgacaccgat ctaacgaaca tggctgccgc 6241 accacccgac aacagaaagt cgcgcgccgt catcccccgt gggaccagtg actggagcct 6301 gcctgaaccc aaaatgcgaa cactgggttt caagtccaag atcaacatcg aaacacttgc 6361 taatgtcccc gacgggtata tgaacacctt tgcatccgtt gcaactgaat cgcaacgtag 6421 gaaatgggag gaggccgcac gtggcgattt cggcatcact gacgatgaga aatgggagaa 6481 gttgctcatt gctgcttgta tatatttcgc agacaatggc acctcaccga atttcgacga 6541 ggaactcact atggaggtta atggcggtct caactccatc aaagagtacc ccgttcgccc 6601 ctttgtcgtt agagccaaaa agatttccac gctgcgcaga atctttcgct gttactccat 6661 cgaaacgaag ctcatgttcg tgaagctgag gcgcgtgcca cactgggcca taaagcacgg 6721 atgcctcgat gagatcgtct ttgatttcat gatccccgac cagttcacct ctaggactgc 6781 gcttgaaaca ctgaagcaga ccaaactggc tgccattggt gttggcacaa gcaattctct 6841 cctcacctcc gagcagacga acatgaggac cactgaaacc cgacggcgca atgactacga 6901 tggtcacgag gcgctcctcc ggtagatctc tcatgcactt acatttcctt ttaagcaatg 6961 catttcaata cgcattttaa ttatatcaag cgtcaagaat ttctcccgct tgcagttaat 7021 ccttataggg tggcactttg tgttatgcaa tggaaaattc agtgacgcaa tcaaccatca 7081 ttggttggtg acaacgcagt actttcttta tttcacatca agcgaccagc acatcgcccg 7141 cttacagcta atcctacctg agggtggcac tctgtgttat gtaatggaat gtgcaatctc 7201 gcaaccaacc gtcattggtt gatggtgcgg ccaacacccg cactcttgta taccggaaag 7261 gtt //