LOCUS AJ544268 7263 bp RNA linear VRL 13-AUG-2004 DEFINITION Barley mild mosaic virus gene for polyprotein, clone 1-12, genomic RNA. ACCESSION AJ544268 VERSION AJ544268.1 KEYWORDS 6K1 protein; 6K2 protein; coat protein; NIa protease; NIb; polymerase; P3 protein; polyprotein; VPg protein. SOURCE Barley mild mosaic virus ORGANISM Barley mild mosaic virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae; Bymovirus. REFERENCE 1 AUTHORS Kanyuka,K., McGrann,G., Alhudaib,K., Hariri,D. and Adams,M.J. TITLE Biological and sequence analysis of a novel European isolate of Barley mild mosaic virus that overcomes the barley rym5 resistance gene JOURNAL Arch. Virol. 149 (8), 1469-1480 (2004) PUBMED 15290374 REFERENCE 2 (bases 1 to 7263) AUTHORS Adams,M.J. TITLE Direct Submission JOURNAL Submitted (14-FEB-2003) Adams M.J., Plant Pathogen Interactions Division, Rothamsted Research, Harpenden, Herts AL5 2JQ, UNITED KINGDOM FEATURES Location/Qualifiers source 1..7263 /mol_type="genomic RNA" /country="France:Marne - Sillery" /segment="RNA1" /host="barley" /note="rym5 resistance-breaking" /db_xref="taxon:12466" /clone="1-12" /isolate="F-SIL" /organism="Barley mild mosaic virus" 5'UTR 1..148 CDS 149..6925 /db_xref="GOA:Q68VH7" /db_xref="InterPro:IPR001205" /db_xref="InterPro:IPR001592" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR001730" /db_xref="InterPro:IPR007094" /db_xref="InterPro:IPR009003" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR013648" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014021" /db_xref="UniProtKB/TrEMBL:Q68VH7" /codon_start=1 /protein_id="CAD66660.1" /translation="MEEFIPEVFYQNQVQSLKKILKSWKRDTSIYAYLAREQEVLAFL VLSPAHIAKLNKLLTEESARCALLAQNCETIEALAVVRQALQGVTLHFGDNGMEKGWL HMMKALDACLDESFSENAAALKKSIQAVGHKLIAAKNRIEGCERSVNHLTTFQFAREY GLSTTYFEKLSNIGGHIRSFVWSSDSGEIFPKLKRSSRTRRISTFTSYYWGEFWCNCI WFLCCCWSPARWCFNSAIFIWSLCGVLNLSMIVLQFALKRHFGRYYFRYIMSGVLAIC AVCCVHLKNRKGPILQASQKDKRFIGILAFCITVIYMFDVDLADALSNNLHKISRLVN LFLDDNRGFATPALDNLTDFTTILQSGTSSDDLKIVQDTLAVVLQVDDEDATQDDAIY DSDGLQTFKQWVSHNQLAGMQLARPLQYPCSNTYGLTADNVAELSASMAQEAKQWSQV VGHTGSGKSTRLPTAYANCLKGLAGRKKNVLVCEPTRAATVNVTSGISQNFGRLVYGR HEGWSNLGDKTIQVMTYGSALAAWKVDNKFLSQFDAVFLDESHLITTHALVFESICQE VTNIRKFYVSATPRDGKKCPEAVRRYEIKTVKSECSSVDTFVRSQEKTNSLYVLDHDT VLVFLAGKAECDRAASNWNKLYSTNMYAYSLTGDNFTMAYEKIVTEMLTKRTIVFCTN ILETGVTLNVDCVVDFGFTMRPELDLVDKSLTLMRRRVTENERAQRIGRAGRLRTGHA ICIGNPETRHDLVPPETLYEAALLSFVHGVQFYINEHFENAWIEGVTKAQASVMTQFK LSPFLMRDIVRDDGAIPPSPHKILKDYTHRNTDLIGTKLSVMSHVYNSWPLYRTVHQS IFRGDSNVPQTLRYARVPFNVSTAHDFPWEDFAQACLEFQPRVLQVFSDSSSTSRIIN LQIGKMHIVNSMEEVKININSYQRSAENLRSVKDSFESSIFRTKLLRGNPTGKITKRI ETLLDNVRVLQQIHAKLEMIAYSGGEKINMDKKSVDELNEIVELQSKNSLTAEELARI LHLTKPTSTFFNLFAERGRQMLVTLLVMVAASLMYLVFWVSPRKQDDITIEGKGRAYN RDKRMGYDSYEEDEVRNKINKKFKERSTRFSNDSKPETSSKYRNLKQEFVNFYDLKTD ANVLQAVFTAMDGAVLLQTENPMADIGHVNRLLQDHFEDSESQAVHEGLNTMVMCHLT MKDGRQFELDMEHHDPETLAKLGGEVGFRMNRDDLRQVGATRYINPRAQTSAATLEGM TMKPMSSFTIDSAKMVGFIKTAKDTLNCILYGDWIIAPAHIQQGEGDITFIFQHVQFT TTTERLASYGIRQFKGLDLVVIRRPQQIRAVKKDMRASILDTPTEIQMLYLSTKGGKY QVSTSAVCFPHYNNRWGHVISTAEGMCGCIVFNPTTNHIVGIHVSYNDTRRRNEFQAF TSDVLTTINAPGHEIPFSPWIFDWKFCGYTTKPRNMQSAPSTLERLNINATGFGFKLD AQEIKPAMLRSTESFSREFPDTQFKLIGEVKKGLIDKHTITGENPYFLEFLNTFKPYQ WVQAFMDEYAPSILAYDAYFKDLKKYDRPPHANVFCQDTLTKAKHKMISILEEAGMGR TLVRTTEQVLLDMAWTTSGGPLYHGKKIDIVQHLSDDELVQFSEACQQALITGTLDGV WNGSLKAELRSSQKILERKTRVFTAAPITSLIAMKYYVDDFNKQFYKTHLKAPHTVGI NKFNRGWQNLYEKLNKPEWAHGSGDGSRFDSSIDGFLFDVIKDIRKHFMHTEHHKELD TIYEEIVNTKICLANGLVIQKNCGNNSGQPSTVVDNTLALMTAFLYAYARLTGDHAFE LMDENFVFVCNGDDNKFSMSPSFMAKFGCDFSPFLSELGLTYEFDEATEDICENPYMS LTMVRTSFGIGFSLSIERIVAILQWSRAGGVLHAYLSGIAALFESFNTPKLFNLVHTY LLWLVTEHEEELFSMMELKDMFMPLPTREQIALLHYVGTEPIVEETFLQAGHEEPDPI VPPVPDTDLTNMAAAPPDNRRSRAVIPRGTSDWSLPEPKMRTLGFKSKINIETLANVP DGYMNTFASVATESQRRKWEEAARGDFGITDDEKWEKLLIAACIYFADNGTSPNFDEE LTMEVNGGLNSIKEYPVRPFVVRAKKISTLRRIFRCYSIETKLMFVKLRRVPHWAIKH GCLDEIVFDFMIPDQFTSRTALETLKQTKLAAIGVGTSNSLLTSEQTNMRTTETRRRN DYDGHEALLR" /product="polyprotein" mat_peptide 149..1024 /product="P3 protein" mat_peptide 1025..1225 /product="6K1 protein" mat_peptide 1226..3199 /product="P3 protein" mat_peptide 3200..3391 /product="6K2 protein" mat_peptide 3392..3928 /product="VPg protein" mat_peptide 3929..4567 /product="NIa protease" mat_peptide 4568..6169 /product="NIb polymerase" mat_peptide 6170..6922 /product="coat protein" 3'UTR 6923..7263 ORIGIN 1 aaaaataaaa ctccactcca acccaataca aacaacgaac aacaaacaac gaatttgcaa 61 cccaccaaag caacactgcc cgctagtagc aattcaacca aactcagcaa caaatcaccc 121 ttcgaccaaa cgaactctga ccatcgatat ggaggagttc attcctgaag tgttctacca 181 gaaccaggtt caaagtctca agaagattct taaatcctgg aaacgcgaca cttctattta 241 cgcgtatctt gctcgcgagc aagaggtcct agccttcctt gtactgagtc ctgcacacat 301 tgccaaattg aacaaactac tcactgagga gtctgcacga tgcgccctgc ttgcccaaaa 361 ctgtgaaacc atcgaagctc tggccgttgt gcggcaagcc ctgcagggtg tcacgctaca 421 ctttggtgac aatggcatgg agaaaggctg gctgcatatg atgaaagcac ttgatgcgtg 481 ccttgatgaa agcttcagcg agaacgccgc cgcactcaag aaaagcatcc aggcggtcgg 541 tcataagctt atcgcagcaa aaaaccgcat cgaaggttgc gagcgatctg tgaatcacct 601 tacaacgttt caatttgctc gcgaatatgg cttaagtact acatacttcg aaaagttgtc 661 caatatcggt gggcatattc gaagttttgt gtggtccagc gactcaggag aaattttccc 721 aaagctaaaa agatcatcac gtacgaggcg catctcgaca ttcacgagtt actactgggg 781 tgaattttgg tgcaactgca tctggttcct ctgctgctgc tggtcccccg cacgctggtg 841 ctttaattcc gcaattttca tatggagcct gtgtggtgtt ttaaacttat ctatgattgt 901 tctacagttt gctcttaagc gtcactttgg tagatactat tttcgataca taatgtctgg 961 tgtcctagct atttgcgccg tttgttgtgt tcatcttaaa aacagaaaag ggcctatatt 1021 gcaagcctcc caaaaagata agcgtttcat tggtatttta gctttctgca ttactgttat 1081 atacatgttt gatgttgatc ttgccgacgc gcttagtaat aatctccata agatctcccg 1141 ccttgtgaat cttttccttg atgacaaccg tggatttgca acacctgccc tcgacaatct 1201 aaccgacttc acaacaatcc ttcaaagtgg aacatcaagt gacgacctga agattgttca 1261 agacacgttg gctgtagttt tgcaagtcga tgacgaggat gcaactcagg atgatgccat 1321 atatgattcc gatgggcttc agacttttaa acaatgggtc tcacacaacc agctagccgg 1381 gatgcaactt gcacgcccac tacaataccc ttgctcgaac acttatggtc taaccgcgga 1441 caacgttgca gaactatccg ccagcatggc acaggaagca aagcagtggt cacaagttgt 1501 tgggcacact ggttccggga agtccacacg actaccaact gcatacgcca actgcttgaa 1561 aggcttggcc ggacgaaaga aaaatgtcct cgtttgcgaa cccacaagag ccgccactgt 1621 caatgtaact agcggcattt cgcagaattt tggcaggctt gtgtacgggc ggcatgaagg 1681 ctggagcaac ctcggcgaca aaacaataca ggtcatgaca tatggttccg cacttgcagc 1741 atggaaagtc gacaacaaat tcctgagcca gtttgacgca gtatttcttg acgagtctca 1801 ccttataacc acgcacgccc ttgtcttcga aagcatttgc caggaggtta caaacattcg 1861 caagttctat gtatcagcca caccccgcga tggtaagaag tgtccagagg ccgtgcgcag 1921 atacgaaatc aaaactgtga aatctgagtg cagtagtgtc gacacttttg ttcgaagcca 1981 ggagaaaaca aactcgcttt acgttctcga ccacgacacc gtcctcgttt ttctcgctgg 2041 aaaggccgag tgtgacagag cagcaagcaa ctggaacaag ctctactcaa ccaacatgta 2101 cgcctactct ctaacaggtg acaacttcac aatggcatat gagaagattg ttacagaaat 2161 gctcactaaa cgcaccatcg ttttctgcac gaacatcctg gaaaccggcg tcacccttaa 2221 cgtggactgc gttgtcgact tcggattcac catgcgtccc gaacttgatc ttgttgataa 2281 atcgctaacc ttgatgcgac gccgagtcac cgagaacgaa cgtgcacagc gcattgggcg 2341 cgcaggaaga ctcagaactg gacacgcaat ctgtattggc aatcccgaaa cacgccacga 2401 cttagtcccg ccagaaacac tctacgaagc agctcttctt agcttcgtgc acggcgtgca 2461 attctacatc aatgaacact tcgaaaacgc ctggattgaa ggtgtcacaa aggctcaagc 2521 ctccgtcatg acacaattca aactctctcc tttcctcatg cgtgatattg ttcgcgacga 2581 tggtgcaata ccaccatcac cccacaagat actcaaggat tacacacacc gcaacaccga 2641 tctgatagga actaaactct ccgttatgtc acatgtttat aattcatggc ctctttaccg 2701 aacagtgcac caatccatct tccgtggaga ttccaatgtt ccacaaacgc ttagatatgc 2761 acgcgtcccc ttcaatgtta gcactgctca tgattttcca tgggaagact tcgcacaggc 2821 atgccttgaa ttccagccac gcgtccttca ggtcttcagt gacagcagca gcacttcgcg 2881 cataatcaac ctgcagattg ggaagatgca catcgtcaat tctatggaag aagttaagat 2941 aaacataaac agctaccagc gctccgcaga aaacctacgc tcagttaaag acagcttcga 3001 aagctcgatc ttccgaacaa aactgcttcg tggaaaccca actgggaaga taactaagcg 3061 catcgagact ctccttgaca acgtgcgagt gcttcaacag atacatgcga aactcgagat 3121 gattgcatac tcaggtggag agaaaattaa catggacaag aaatcagttg acgagctaaa 3181 tgagattgtc gaactccaga gcaaaaactc actcactgcc gaggaactgg cgcgcatatt 3241 gcacctgaca aaacctacct ccaccttctt caatctgttt gctgaacgtg gtcggcaaat 3301 gctcgtcact ctcctggtta tggttgccgc ctcactcatg tatctcgttt tctgggtttc 3361 tcccaggaaa caggacgaca ttaccattga ggggaaaggc agggcataca accgtgacaa 3421 gcgcatgggg tacgactcct acgaggaaga cgaagttcgc aacaagatca acaaaaagtt 3481 caaagagcgc agcacaaggt tctccaatga ctctaaaccg gaaacaagct cgaaataccg 3541 caatctgaag caagagtttg ttaacttcta tgatctcaaa accgatgcga acgtgctaca 3601 agctgtgttc actgcaatgg acggggccgt ccttcttcaa accgaaaatc caatggcaga 3661 cattggccat gtcaataggc tgctgcagga ccactttgaa gacagtgaga gccaggctgt 3721 gcatgaaggc ctcaacacca tggtcatgtg ccacctaact atgaaagatg gaagacagtt 3781 tgagcttgac atggaacacc atgatcccga aactctcgcc aaacttgggg gcgaagttgg 3841 tttcagaatg aacagagacg acttacgtca agttggagcc acacgataca tcaacccaag 3901 agcacaaaca tctgcagcga cgctcgaagg catgaccatg aaacccatga gttctttcac 3961 cattgacagc gcaaagatgg ttggcttcat caagactgca aaagacacac tcaactgcat 4021 cctttacggc gactggatta tagctcctgc gcacatacag cagggcgaag gggacataac 4081 attcatcttc cagcacgtac aattcacgac tacaactgaa cgtttggcta gctacggcat 4141 tcggcagttc aaaggtcttg accttgttgt catccgacgc cctcagcaga tacgcgcagt 4201 caagaaggac atgcgtgcta gcattctcga cacacccact gaaatacaaa tgctctactt 4261 gtccactaaa ggtggtaagt accaagtgtc cacgtccgct gtgtgctttc cacactacaa 4321 taaccgatgg ggacacgtca tctcaacagc agaaggcatg tgcggctgta ttgtattcaa 4381 ccccaccacg aaccacatcg ttggaatcca cgtctcctac aacgacacgc gcagaagaaa 4441 tgagtttcaa gctttcacaa gtgacgttct gacaacgatt aatgcacccg gacacgagat 4501 acctttcagc ccatggatct tcgactggaa gttttgtggg tacacaacaa aaccacgaaa 4561 catgcaaagc gcaccgagca cactcgagcg actcaacatc aatgccacag gctttggttt 4621 caagctcgat gctcaggaga ttaaaccagc catgcttcga tccacagagt cgttctccag 4681 ggagttccca gacacacagt tcaaactcat tggggaagtg aagaaaggac tcatcgacaa 4741 acacacaatc acaggagaga acccatactt ccttgaattc ctgaacacat tcaaaccata 4801 ccaatgggtg caggccttca tggacgagta cgcaccctcc atccttgcct atgatgcgta 4861 ttttaaagat ctgaagaaat atgataggcc accacacgca aatgttttct gtcaggacac 4921 actaaccaaa gctaagcata agatgatcag catcctcgag gaagcaggca tgggaaggac 4981 cctagtacga accaccgagc aggtcttgct tgacatggcg tggaccacct ctggtggacc 5041 cttgtaccat ggtaagaaga tcgacattgt gcaacacttg tctgatgacg agcttgtaca 5101 attcagtgag gcctgccaac aggctcttat cactggaacg ctggatggag tctggaacgg 5161 atcactcaaa gctgagctgc gctcttcgca gaaaatcctc gaacggaaaa cccgcgtttt 5221 cactgctgca cccataacaa gcctcattgc gatgaaatac tacgtggatg atttcaacaa 5281 acagttctat aaaacccatc tcaaagcacc gcacacagtc ggcatcaaca agtttaaccg 5341 cggatggcag aatctgtatg agaagctcaa caaacctgaa tgggcgcatg ggagtgggga 5401 tggttccagg tttgacagtt ccattgatgg attccttttt gatgtcatca aggacattcg 5461 aaagcatttc atgcacacgg aacatcacaa agaactcgac acaatctacg aagaaattgt 5521 caacacgaag atatgtctgg cgaacggcct agtcattcaa aagaattgcg ggaacaacag 5581 tgggcagcca agcactgttg tggacaatac actcgcactc atgaccgctt ttctctacgc 5641 atatgcccgg ctcactggag accacgcctt cgaactcatg gacgaaaact ttgttttcgt 5701 ttgcaatggt gatgacaaca agttttccat gtcacctagc ttcatggcga agtttggatg 5761 cgatttctcc ccatttctct ctgagctcgg gctaacctac gaattcgatg aagcaactga 5821 agacatctgc gaaaacccct acatgtcctt gacgatggtc cgcacctcgt ttgggattgg 5881 tttctctctc tccattgagc gcatcgttgc aattttgcaa tggagtcgcg ctggtggagt 5941 cttgcatgcc tatctctctg gcatcgctgc tcttttcgaa tccttcaaca cacccaaact 6001 cttcaatctc gtgcacacat atctcctttg gctcgtcaca gagcacgagg aggaactctt 6061 ctccatgatg gaactcaaag acatgttcat gcccttgcct actagggaac agatagcctt 6121 gctgcactac gttgggactg agcccatcgt ggaggaaaca tttctgcaag caggacacga 6181 agaaccagac cccatcgttc ccccggttcc tgacaccgat ctaacgaaca tggctgccgc 6241 accacccgac aacagaagat cacgcgccgt catcccccgt ggaaccagtg attggagcct 6301 gcctgaaccc aaaatgcgaa cactgggttt caagtccaag atcaacatcg aaacacttgc 6361 caatgtcccc gacgggtata tgaatacctt cgcatccgtt gcaactgaat cgcaacgtag 6421 gaaatgggag gaggccgcac gtggcgattt cggcatcact gacgatgaga aatgggagaa 6481 gctgctcatt gctgcttgta tatatttcgc agacaatggt acctcaccaa atttcgacga 6541 ggaactcact atggaggtta atggcggtct caactccatt aaagagtacc ccgttcgccc 6601 ctttgtcgtt agagccaaaa agatttccac gctgcgcaga atctttcgct gttactccat 6661 cgaaacgaag ctcatgttcg tgaagctgag gcgcgtgccg cactgggcca taaagcacgg 6721 atgcctcgat gagatcgtct ttgatttcat gatccccgac cagttcacct ctaggactgc 6781 acttgagaca ctgaagcaga ccaagcttgc tgccattggt gttggcacaa gcaattctct 6841 gctcacctcc gagcagacga acatgaggac cactgaaacc cgacggcgca atgactacga 6901 tggtcacgag gcgctcctcc ggtagatctc tcatgcactc acatttcctt ttaagcaatg 6961 catttcaata cgcttttaat tatatcaagc gtcaagaatt tctcccgctt gcagttaatc 7021 cttatagggt ggcactttgt gttatgcaat ggaaaattca gtgacgcaat caaccatcat 7081 tggctggtga caccgcagta ctttctttat ttcacatcaa gcgaccagca catcgcccgc 7141 ttacagctaa tcctacctga gggtggcact ctgtgttatg taatggaatg tgcaatctcg 7201 caaccaaccg tcattggttg atggtgcggc ctaacacccg cgctcttgta taccggaaag 7261 gtt //