LOCUS AJ544271 3381 bp RNA linear VRL 13-AUG-2004 DEFINITION Barley mild mosaic virus gene for polyprotein, clone 2-10, genomic RNA. ACCESSION AJ544271 VERSION AJ544271.1 KEYWORDS P1 protein; P2 protein; polyprotein. SOURCE Barley mild mosaic virus ORGANISM Barley mild mosaic virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae; Bymovirus. REFERENCE 1 AUTHORS Kanyuka,K., McGrann,G., Alhudaib,K., Hariri,D. and Adams,M.J. TITLE Biological and sequence analysis of a novel European isolate of Barley mild mosaic virus that overcomes the barley rym5 resistance gene JOURNAL Arch. Virol. 149 (8), 1469-1480 (2004) PUBMED 15290374 REFERENCE 2 (bases 1 to 3381) AUTHORS Adams,M.J. TITLE Direct Submission JOURNAL Submitted (14-FEB-2003) Adams M.J., Plant Pathogen Interactions Division, Rothamsted Research, Harpenden, Herts AL5 2JQ, UNITED KINGDOM FEATURES Location/Qualifiers source 1..3381 /mol_type="genomic RNA" /country="France:Marne - Sillery" /segment="RNA2" /host="barley" /note="rym5 resistance-breaking" /db_xref="taxon:12466" /clone="2-10" /isolate="F-SIL" /organism="Barley mild mosaic virus" CDS 2..2683 /db_xref="GOA:Q68VH4" /db_xref="InterPro:IPR001337" /db_xref="InterPro:IPR001456" /db_xref="UniProtKB/TrEMBL:Q68VH4" /codon_start=1 /protein_id="CAD66663.1" /translation="MMMNSTIRQGWQQVLRRFSIPTSGDRLIVSNSTDQPIGLFGAFD TSLQTLSQVTNDPEVLKQKSNIPTHLDVASVLEASPRSFPWVFLTNSFCTFGGSIHAQ NLQAFATAEFKSGFCYMNLLIPLSFDIIDAHADSLRGFVEQLPDTLGAYPSLSMVLNV MLHAATRFPEIVASPIPTIAFDAESLQFHVTDKRGVPGMWNILKACRVYELLSLAADG IGCEYMLYPVGAAPQYSFWKKSMDHFTSDRFVEFLAMQDLLASALEQDYATHDARDAL LSALQNAGYTNVVARERRFPNGHDPSIVWLNLSEAPISEKLTELKRYLLVGHRSDDTA DITHSVHQHVFEVLKTMSVQFSKTTNAYNRARFEVNHKVIWNAEYGRGPQQNAELEAL VLFLNRQSLEIENILHRTTSPVVVTSWKPDVPPAAPEIKEEEPTHAIATPITEAPAHV TPVEVVNLPPTRSYWAETLVGILTAILGTVFAFLTRALIRAKRLRRKSTFPWVTLNSG DDDDDQSGGGGGGPQTPGGQPPVPHTRGTHQSRFSVQDIASDTSLLSVDLDEDTLSQY DETLQKIRRALFETSFADILQNSARWISTLEAMALADGNAPYTLLAQYLNGIEEAYTN FRNTGHTSRATLSGFFALEDNLRAAGIAFGTTTPTQTIQNQFADSPARRWKTRFEQIA CELGDASIKSLADLADIIDTERERGDLTQFDVLAASSISSLCRAVRIISDTTDPNAQL ALVENATAMQNNINAILGTNVSIPFLSATRRLLTTRRVQEAGAESRSGATPETVRQLA DAELAKIVSEANMYNEMAASQRDIANATREATIREHVLSPVNALANVGMAAAFFRSGG LRSRAFNPAMPTMPGGPAAAGRPMFQAFRGRGHRLNR" /product="polyprotein" mat_peptide 2..788 /product="P1 protein" mat_peptide 789..2680 /product="P2 protein" 3'UTR 2684..3381 ORIGIN 1 gatgatgatg aactctacga ttcgccaagg atggcagcag gtgctgaggc gcttttccat 61 cccaacatcc ggagatagac tcatcgtttc caactccacc gaccaaccca tcggcctttt 121 cggggcgttc gacacatcgc tgcaaacact ctcacaagtc accaatgatc ccgaggtctt 181 gaagcagaag tccaacatcc ccacgcacct ggacgtggcc tccgtgcttg aagcaagccc 241 acggtccttc ccatgggttt ttctcacgaa ctcattctgc accttcggtg gttcgataca 301 tgctcagaat cttcaagcct tcgcaactgc cgagtttaag agcgggttct gttacatgaa 361 cctgctaata ccactcagct ttgatatcat cgatgcacac gcagattctc ttcgcggctt 421 tgttgaacaa cttcctgaca cgttaggcgc ctacccttca ctcagcatgg tgctaaacgt 481 catgttacac gcagccacgc gtttccccga gatcgtcgcc tcccctatcc caaccatagc 541 atttgacgcc gaatcattgc agttccatgt tactgataaa cggggcgtcc ctggcatgtg 601 gaacatactc aaagcctgcc gtgtgtacga gcttctttcg cttgcagcag atggtatagg 661 ttgcgagtac atgctgtacc ctgttggtgc tgcaccccaa tactccttct ggaagaaatc 721 catggaccat ttcacatccg accggttcgt ggaattccta gccatgcagg atctgctcgc 781 cagtgcactt gaacaagatt atgcaacgca cgacgcgcgc gatgcactac tttcagctct 841 ccagaacgca ggttacacaa acgttgttgc aagggagagg aggtttccaa atggccacga 901 ccctagcatt gtctggttga acctgagcga agcccccatt tcagagaagc taactgaact 961 taaacggtac ctcctagtcg gacataggag cgacgacact gctgatatca cacacagcgt 1021 gcaccagcac gtttttgaag tcctcaagac catgtctgtg cagtttagca agacaacgaa 1081 cgcctacaac cgtgcccgct ttgaagtcaa ccacaaagtc atatggaacg cagaatacgg 1141 acgcggccct caacagaacg ccgagctcga ggctcttgta ctctttctta ataggcaatc 1201 gcttgaaatt gagaacatct tgcacagaac aactagtcct gttgttgtca ccagctggaa 1261 acccgatgtt ccccctgctg cccctgaaat caaggaggag gaacccacgc acgcaatcgc 1321 aacaccaata actgaggcgc cagcacatgt cactcctgtt gaagttgtga acctgccacc 1381 gacgcgctcc tattgggctg agacacttgt cggtatcctg actgcaatcc tgggaacggt 1441 attcgccttc ctcactcgag cactcattcg tgcaaagaga ttacggagga aatccacctt 1501 cccctgggtg acgctaaact ctggagatga cgatgatgac caatctgggg ggggaggagg 1561 tggcccgcaa acacctggcg ggcagccccc agtcccgcac acgcgtggaa cgcaccagtc 1621 gcgcttctcc gtgcaggaca tagcatccga caccagtctg ctaagtgtcg atctcgacga 1681 agacacgctc tcccagtatg acgaaaccct ccaaaagatc cgccgtgcgc tcttcgaaac 1741 cagttttgca gacatcctgc aaaactctgc tcgttggatc tccacgctgg aagcgatggc 1801 tctcgcagat ggcaatgctc cttacacact tcttgcgcag tacctcaacg ggattgagga 1861 ggcgtacacg aactttcgca acacaggtca cacctcccgc gcaacacttt caggcttctt 1921 cgctttggaa gataatctgc gtgcagctgg catagctttt gggaccacaa cacccacgca 1981 aaccatacag aaccaatttg ctgactcccc agcccgtcga tggaaaacac gatttgaaca 2041 gattgcatgt gaactgggcg atgctagcat caaatcgctt gcagatcttg cagacatcat 2101 cgacactgag cgggagaggg gcgacttgac tcagtttgat gttctcgcag cctcttccat 2161 tagcagcctc tgtcgtgctg tgcgcatcat cagtgacacc accgatccaa atgctcaatt 2221 agcccttgtt gaaaacgcaa cggctatgca gaacaacatc aatgccatcc tgggcacgaa 2281 cgttagcata cctttcctca gtgccacgcg tcgtttactc accacacgcc gtgttcaaga 2341 agccggggcg gagagccgct ctggagcaac gcctgaaacc gttcggcaac tggctgacgc 2401 agagctggca aaaattgtga gcgaggcaaa catgtacaat gagatggccg ccagccaaag 2461 ggacatcgcc aacgcaacac gcgaagccac catccgtgag catgtgctca gccccgtcaa 2521 cgctttggca aatgttggca tggctgctgc gttcttccga tccggtggtt tgcgctcaag 2581 ggccttcaac cccgcaatgc caacaatgcc cggtggtcct gctgctgcgg ggcggccaat 2641 gttccaagcc ttcaggggac gagggcatcg tcttaatagg taggcatcag aactctgtgc 2701 tctggcacag cactgaacga gtgacacgcg ctcgttgtga agatccaatt tcacgcccag 2761 cgtgccactg aacaaacgaa acacgtctgt tgtgataatt aattaatttt tgcgcagact 2821 ttgtctgtgt tttctagagt gtgctgctct gcagctgcat tggagggttc cacgggaacg 2881 acatcatcac accccatccg caaaccgcct gcattcacat ctttgtgcca ctttaaatac 2941 tcatacgcat agccaagtgc ctttctggca gagcatcccc gagcatcgac attcacgcga 3001 ttgcaatcaa ctggcttaat ccccggtttt gcaatcaata gtgagttcta cctctggacg 3061 tgttcccctg gaactgcaat cctcgttatg ttgtcgctga ttactatcag ctcgtaaacc 3121 atgatatcca cccacaatta gctactcgtg tactaacagt accggacacg cctatcctgc 3181 acttaagcct gcaggacgct accaggtccg cctactgtta ccatttgtgt agtttgttgt 3241 ggctccacct catatctaaa ttcagtacct gcatacaaaa cgtcatgcat ccctgttcaa 3301 catgaacacg gtttgggaag aagcaagtca tcatagactg ctggcattgt taggttgaca 3361 atgcttatgt acacaggaac g //