LOCUS AJ544266 7262 bp RNA linear VRL 13-AUG-2004 DEFINITION Barley mild mosaic virus gene for polyprotein, isolate UK-L, genomic RNA. ACCESSION AJ544266 VERSION AJ544266.1 KEYWORDS 6K1 protein; 6K2 protein; coat protein; NIa protease; NIb; polymerase; P3 protein; polyprotein; VPg protein. SOURCE Barley mild mosaic virus ORGANISM Barley mild mosaic virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae; Bymovirus. REFERENCE 1 AUTHORS Kanyuka,K., McGrann,G., Alhudaib,K., Hariri,D. and Adams,M.J. TITLE Biological and sequence analysis of a novel European isolate of Barley mild mosaic virus that overcomes the barley rym5 resistance gene JOURNAL Arch. Virol. 149 (8), 1469-1480 (2004) PUBMED 15290374 REFERENCE 2 (bases 1 to 7262) AUTHORS Adams,M.J. TITLE Direct Submission JOURNAL Submitted (14-FEB-2003) Adams M.J., Plant Pathogen Interactions Division, Rothamsted Research, Harpenden, Herts AL5 2JQ, UNITED KINGDOM FEATURES Location/Qualifiers source 1..7262 /mol_type="genomic RNA" /country="United Kingdom:Lincolnshire - Rothwell" /segment="RNA1" /host="barley" /db_xref="taxon:12466" /isolate="UK-L" /organism="Barley mild mosaic virus" 5'UTR 1..148 CDS 149..6925 /db_xref="GOA:Q68VH9" /db_xref="InterPro:IPR001205" /db_xref="InterPro:IPR001592" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR001730" /db_xref="InterPro:IPR007094" /db_xref="InterPro:IPR009003" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR013648" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014021" /db_xref="UniProtKB/TrEMBL:Q68VH9" /codon_start=1 /protein_id="CAD66658.1" /translation="MEEFIPEVFYQNQVQSLKKILKSWKRDTSIYAYLAREQEVLAFL VLSPAHIAKLNKLLTEESTRCALLAQNCETIEALAVVRQALQGVTLRFGDNGMEKGWL HMMKALDACLDESFSENAAALKKSIQAVGHKLIAAKNRIEGCERSVNHLTTFQFAREY GLSTTYFEKLSNIGGHIRSFVWSSDSGEIFPKLKRSSRTRRISTFTSYYWGEFWCNCI WFLCCCWSPARWCFNSAVFIWSLCGVLNLSMIVLQFALKRHFGRYYFRYIMSGVLAIC AVCCVHLKNRKGPILQASQKDKRFIGILAFCITVIYMFDVDLADALSNNLHKISRLVN LFLDDNRGFATPALDNLTDFTTILQSGTSSDDLKIVQDTLAVVLQVDDEDATQDDAIY DSDGLQTFKQWVSHNQLAGMQLARPLQYPCSNTYGLTADNVAELSASMAQEAKQWSQV VGHTGSGKSTRLPTAYANCLKGLAGRKKNVLVCEPTRAATVNVTSGISQNFGRLVYGR HEGWSNLGDKTIQVMTYGSALAAWKVDNKFLSQFDAVFLDESHLITTHALVFESICQE VTNIRKFYVSATPRDGKKCPEAVRRYEIKTVKSECSSVDTFVRSQEKTNSLYVLEHDT VLVFLAGKAECDRAASNWNKLYSTNMYAYSLTGDNFTMAYEKIVTEMLTKRTIVFCTN ILETGVTLNVDCVVDFGFTMRPELDLVDKSLTLMRRRVTENERAQRIGRAGRLRTGHA ICIGNPETRHDLVPPETLYEAALLSFVHGVQFYINEHFENAWIEGVTKAQASVMTQFK LSPFLMRDIVRDDGAIPLSLHKILKDYTHRNTDLVGTKLSVMSHVYNSWPLYRTVHQS IFRGDSNVPQTLRYARVPFNVSTAHDFPWEDFAQACLEFQPRVLQVFSDSSSTSRIIN LQIGKMHIVNSMEEVKININSYQRSAENLRSVKDSFESSIFRTKLLRGNPTGKITKRI ETLLDNVRVLQQIHAKLEMIAYSGGEKINMDKKSVDELNEIVELQSKNSLTAEELARI LHLTKPTSTFFNLFAERGRQMLVTLLVMVAASLMYLVFWVSPRKQDDITIEGKGRAYN RDKRMGYDSYEEDEVRNKINKKFKERSTRFSNDSKPETSSKYRNLKQEFVNFYDLKTD ANVLQAVFTAMDGAVLLQTENPMADIGHVNRLLQDHFEDSESQAVHEGLNTMVKCHLT MKDGRQFELDMEQHGPETVAKLGGEVGFRMNRDDLRQVGATRYINPRAQTSAATLEGM TMKPMSSFTIDSAKMVGFIKTAKDTLNCILYGDWIIAPAHIQQGEGDITFIFQHVQFT TTTERLASYGIRQFKGLDLVVIRRPQQIRAVKKDMRASILDTPTEIQMLYLSTKGGKY QVSTSAVCFPHYNNRWGHVISTAEGMCGCIVFNPTTNHIVGIHVSYNDTRRRNEFQAF TSDVLTTINAPGHEIPFSPWIFDWKFCGYTTKPRNMQSAPSTLERLNINATGFGFKLD AQEIKPAMLRSTESFSREFPDTQFKLIGEVKKGLIDKHTITGENPYFLEFLNTFKPYQ WVQAFMDEYAPSILAYDAYFKDLKKYDRPPHANVFCQDTLTKAKHKMISILEEAGMGR TLVRTTEQVLLDMAWTTSGGPLYHGKKIDIVQHLSDDELVQFSEACQQALITGTLDGV WNGSLKAELRSSQKILERKTRVFTAAPITSLIAMKYYVDDFNKQFYKTHLKAPHTVGI NKFNRGWQNLYEKLNKPGWTHGSGDGSRFDSSIDGFLFDVIKDIRKHFMDTEHHKELD TIYEEIVNTKICLANGLVIQKNCGNNSGQPSTVVDNTLALMTAFLYAYARLTGDHAFE LMDENFIFVCNGDDNKFSMSPSFMAKFGCDFSPFLSELGLTYEFDEATEDICENPYMS LTMVRTSFGIGFSLSIERIVAILQWSRAGGVLHAYLSGIAALFESFNTPKLFNLVHTY LLWLVTEHEEELFSMMELKDMFMPLPTREQIALLHYVGTEPIVEETFLQAGHEEPDPI VPPVPDTDLTNMAAAPPENRRSRAVIPRGTSDWSLPEPKMRTLGFKSKINIETLANVP DGYMNTFASVATESQRRKWEEAARGDFGITDDEKWEKLLIAACIYFADNGTSPNFDEE LTMEVNGGLNSIKEYPVRPFVVRAKKISTLRRIFRCYSIETKLMFVKLRRVPHWAIKH GCLDEIVFDFMIPDQFTSRTALETLKQTKLAAIGVGTSNSLLTSEQTNMRTTETRRRN DYDGHEALLR" /product="polyprotein" mat_peptide 149..1024 /product="P3 protein" mat_peptide 1025..1225 /product="6K1 protein" mat_peptide 1226..3199 /product="P3 protein" mat_peptide 3200..3391 /product="6K2 protein" mat_peptide 3392..3928 /product="VPg protein" mat_peptide 3929..4567 /product="NIa protease" mat_peptide 4568..6169 /product="NIb polymerase" mat_peptide 6170..6922 /product="coat protein" 3'UTR 6923..7262 ORIGIN 1 aaaaataaaa ctccactcca acccaataca aacaacgaac aacaaacaac gaatttgcaa 61 cccaccaaag caacattgcc cgctagtagc aattcaacca aactcagcaa caaatcaccc 121 ctcgaccaaa cgaactctga ccatcgatat ggaggagttc attcctgaag tgttctacca 181 gaaccaggtt caaagtctca agaagattct taaatcctgg aaacgcgaca cttctattta 241 cgcgtatctt gctcgcgagc aagaggtcct agccttcctt gtactgagtc ctgcacacat 301 tgccaaattg aacaaactac tcactgagga gtctacacga tgcgccctac ttgcccaaaa 361 ctgtgaaacc atcgaagctc tggccgttgt gcggcaagcc ctgcagggtg tcacgctacg 421 ctttggtgac aatggcatgg agaaaggctg gctgcatatg atgaaagcac ttgatgcgtg 481 ccttgacgaa agcttcagcg agaatgccgc cgcactcaag aaaagcatcc aggcggtcgg 541 tcacaagctt atcgcagcaa aaaaccgcat cgaaggttgc gagcgatctg taaatcacct 601 tacgacgttt caatttgctc gcgaatatgg cttaagtact acatacttcg aaaagttgtc 661 caatatcggt gggcatattc gaagttttgt gtggtccagc gactcaggag aaattttccc 721 aaagctaaaa agatcatcac gtacgaggcg catctcgaca ttcacgagct actactgggg 781 tgaattttgg tgcaactgca tctggttcct ctgctgctgc tggtcccccg cacgctggtg 841 ctttaattcc gcagttttca tatggagctt gtgtggtgtt ttaaacttat ctatgattgt 901 tttacagttt gctcttaagc gtcactttgg tagatactat tttcgataca taatgtctgg 961 tgtcctagct atttgcgccg tttgttgtgt tcatcttaaa aacagaaaag ggcctatatt 1021 gcaagcctcc caaaaagata agcgttttat tggcatttta gctttctgca ttactgttat 1081 atacatgttt gatgtcgatc ttgccgacgc gcttagtaat aatctccata agatctcccg 1141 ccttgtaaat cttttccttg atgacaaccg tggatttgca acacctgccc tcgacaatct 1201 aaccgacttc acaacaatcc ttcaaagtgg aacatcaagt gacgacctga agattgttca 1261 agacacgttg gctgtagttt tgcaggtcga tgacgaggac gcaactcagg atgatgccat 1321 atatgattcc gatgggcttc agacttttaa acaatgggtc tcacacaacc agctagccgg 1381 aatgcaactt gcacgcccac tacaataccc ttgctcgaac acttacggtc taaccgcgga 1441 caacgttgca gaactatccg ccagcatggc acaggaagca aagcagtggt cacaagttgt 1501 tgggcacact ggttccggga agtccacacg actaccaact gcatacgcca actgcttgaa 1561 aggcttggcc ggacgaaaga aaaatgtcct cgtttgcgaa cccacaagag ccgccactgt 1621 caatgtaact agcggtattt ctcagaattt tggcaggctc gtttacgggc ggcatgaagg 1681 ctggagcaac ctcggcgata aaacaataca ggtcatgaca tatggttccg cacttgcagc 1741 atggaaagtc gacaacaaat tcctgagcca gttcgacgca gtatttcttg acgagtctca 1801 ccttataacc acgcacgccc ttgtctttga aagcatttgc caggaggtta caaacattcg 1861 caagttctat gtatcagcca caccccgcga tggtaagaag tgtccagagg ccgtgcgcag 1921 atatgaaatc aaaactgtga aatctgagtg cagtagtgtc gacacttttg ttcgaagcca 1981 ggagaaaaca aactcgcttt acgttctcga acacgacacc gtcctcgttt ttctcgctgg 2041 aaaggccgag tgtgatagag cagcaagcaa ctggaacaag ctctactcaa ccaacatgta 2101 cgcctactct ctaacaggtg acaacttcac aatggcatat gagaagattg ttacagaaat 2161 gctcactaaa cgcaccatcg ttttctgcac gaacatcctg gaaaccggcg tcacccttaa 2221 cgtggactgc gttgtcgact tcggattcac tatgcgtccc gaactcgatc ttgttgataa 2281 atcgctaacc ttgatgcgac gccgagtcac cgagaacgag cgtgcacagc gcattggacg 2341 cgcaggaaga ctcagaactg gacacgcaat ctgtattggc aatcccgaaa cgcgccacga 2401 cttagtcccg ccagaaacac tctacgaagc agctcttctt agcttcgtgc acggcgtgca 2461 attctacatc aatgaacatt tcgaaaacgc ctggattgaa ggtgtcacaa aggctcaagc 2521 ctccgtcatg acacaattca aactttctcc tttcctcatg cgtgatattg ttcgcgacga 2581 tggtgcaata ccactatcac tccacaagat actcaaggat tacacacacc gcaataccga 2641 tctggtagga actaaactct ccgttatgtc acatgtttac aattcatggc ctctttaccg 2701 aacagtgcac caatccatct tccgtggaga ttccaatgtt ccacaaacgc tcagatatgc 2761 acgcgtcccc tttaatgtta gcactgctca cgattttcca tgggaagact tcgcacaggc 2821 gtgccttgaa ttccagccac gcgtccttca ggtcttcagt gacagcagca gcacttcgcg 2881 cataatcaac ctgcagattg ggaagatgca catcgtcaac tctatggaag aagttaagat 2941 aaacataaac agctaccagc gctccgcaga aaacctacgc tcagttaaag acagcttcga 3001 aagctcgatc ttccgaacaa aactgcttcg tggaaaccca actgggaaga taactaagcg 3061 catcgagact ctccttgaca acgtacgagt gctgcaacag atacatgcga aacttgagat 3121 gattgcatac tcaggtggag agaaaatcaa catggacaag aaatcagttg acgagctaaa 3181 tgagattgtc gaactccaga gcaaaaactc actcactgcc gaggaactgg cgcgcatatt 3241 gcacctgaca aaacccacct ccaccttctt caatctgttt gctgaacgtg gtcggcaaat 3301 gctcgtcact ctcctggtta tggttgccgc ctcactcatg tatctcgttt tctgggtttc 3361 tcccaggaaa caggacgaca ttaccattga ggggaaaggc agggcataca accgtgataa 3421 gcgcatgggg tacgactcct acgaggaaga cgaagttcgc aacaagatca acaagaagtt 3481 caaagagcgc agcacaaggt tctccaatga ctccaaaccg gaaacaagct cgaaataccg 3541 caatctgaag caagaatttg ttaacttcta tgatctcaaa accgatgcga acgtgctaca 3601 agccgtgttc actgcaatgg acggggccgt ccttcttcaa accgaaaatc caatggcaga 3661 cattggccac gtcaatagac tgctgcagga ccactttgaa gacagtgaga gccaggctgt 3721 gcatgagggc ctcaacacca tggtcaagtg ccacctaacg atgaaagatg gaagacagtt 3781 tgagctcgac atggaacaac acggtcccga aactgtcgcc aaacttgggg gcgaggttgg 3841 tttcagaatg aacagagacg acttacgtca agttggagcc acacgataca tcaacccaag 3901 agcacagaca tctgcagcga cgctcgaagg catgaccatg aaacccatga gttctttcac 3961 cattgacagc gcaaagatgg ttggcttcat caagaccgca aaagacacac tcaactgcat 4021 cctttacggc gactggatta tagctcctgc gcacatacag cagggcgagg gggacataac 4081 attcatcttc cagcacgtac aattcacgac cacaactgag cgtttggcta gctacggcat 4141 tcgacaattc aaaggtcttg accttgttgt catccggcgc cctcagcaga tacgcgcagt 4201 caagaaggac atgcgtgcta gcattctcga cacacccact gaaatacaaa tgctctactt 4261 gtccactaaa ggtggtaagt accaagtgtc cacgtccgct gtgtgctttc cacactacaa 4321 taaccgatgg ggacacgtca tttcaacagc agaaggcatg tgcggctgca ttgtgttcaa 4381 tcccaccacg aaccacatcg ttggaatcca cgtctcctac aacgacacgc gcagaagaaa 4441 tgagtttcaa gctttcacaa gtgacgttct gacaacgatt aatgcacccg gacacgagat 4501 acctttcagc ccatggatct tcgactggaa gttttgtggg tacacaacaa aaccacgaaa 4561 catgcaaagc gcaccgagca cactcgagcg actcaacatc aatgccacag gctttggttt 4621 caagctcgat gcacaggaga ttaagccagc catgcttcgt tccacagagt cgttctccag 4681 ggagtttcca gacacacagt ttaaactcat tggggaagtg aagaaaggac tcatcgacaa 4741 acacacaatc acaggagaga acccatactt ccttgaattc ctgaacacat tcaaaccata 4801 ccaatgggtg caggccttca tggacgagta cgcaccctcc atccttgcct atgatgcgta 4861 ttttaaagat ctgaagaaat atgataggcc accacacgca aatgttttct gtcaggacac 4921 attaaccaaa gctaaacaca agatgatcag catcctcgag gaagcaggca tgggaaggac 4981 cctagtacga accaccgagc aggtcttgct tgacatggcg tggaccacct ccggtggacc 5041 cttgtaccat ggtaagaaga tcgacattgt gcaacacttg tctgatgacg agcttgtaca 5101 gttcagtgag gcctgccaac aggctctcat cactggaacg ctggatggag tctggaacgg 5161 atcactcaaa gccgagctgc gctcttcgca gaaaatcctc gaacggaaaa cccgcgtttt 5221 cactgctgca cccataacga gcctcattgc gatgaaatat tacgtggatg atttcaacaa 5281 acagttctat aaaacccatc tcaaagcacc gcacacagtc ggcatcaaca agttcaaccg 5341 cggatggcag aatctgtatg agaagctcaa caaacctgga tggacgcatg ggagtgggga 5401 tggttccagg tttgacagtt ctattgatgg attccttttc gatgtcatca aggacattcg 5461 aaagcatttc atggacacgg aacatcacaa agaactcgac acaatctacg aagagattgt 5521 caacacgaag atatgtctgg cgaacggcct ggtcattcaa aagaattgcg ggaacaacag 5581 tgggcagcca agcactgttg tggacaacac actcgcactc atgaccgctt ttctctacgc 5641 atatgcccgg ctcactggag atcacgcctt cgaactcatg gacgaaaact tcattttcgt 5701 ctgcaatggt gatgacaaca agttttccat gtcacctagc ttcatggcga agtttggatg 5761 cgatttctcc ccattcctct ctgagctcgg gctaacctac gaattcgatg aagcaactga 5821 agacatctgc gaaaacccct acatgtcctt gacgatggtc cgcacctcgt ttgggattgg 5881 tttctctctc tccatcgagc gcatcgttgc aatcttgcaa tggagtcgcg ctggtggagt 5941 cctgcatgcc tatctctctg gcattgccgc tcttttcgaa tccttcaaca cacccaaact 6001 cttcaatctc gtgcacacat atctcctttg gctcgtcaca gagcacgagg aggaactctt 6061 ctccatgatg gaactcaaag acatgttcat gcccttgccc actagggaac aaatagcctt 6121 gctgcactac gttggaactg agcccatcgt ggaggaaaca tttctgcaag caggacacga 6181 agaaccagac cccatcgttc ccccggttcc cgacaccgat ctaacgaaca tggctgccgc 6241 accacccgaa aacagaagat cacgcgccgt catcccccgt ggaaccagtg actggagcct 6301 gcctgaaccc aaaatgcgaa cactgggttt caagtccaag atcaacatcg aaacacttgc 6361 caatgtcccc gacgggtata tgaacacctt tgcatccgtt gcaactgaat cgcaacgtag 6421 gaaatgggag gaggccgcac gtggcgattt cggcatcact gacgatgaga aatgggagaa 6481 gctgctcatt gctgcttgta tatatttcgc agacaatggc acctcaccga atttcgacga 6541 ggaactcact atggaggtca atggcggtct caactccatt aaagagtacc ccgttcgccc 6601 cttcgtcgtt agagccaaaa agatttctac gctgcgtaga atctttcgct gttactccat 6661 cgaaacgaag ctcatgttcg tgaagctgag gcgcgtgccg cactgggcca taaagcacgg 6721 atgcctcgat gagatcgtct ttgatttcat gatccccgac cagttcacct ctaggactgc 6781 gcttgaaaca ctaaagcaga ccaagcttgc tgccattggt gttggcacaa gcaattctct 6841 cctcacctcc gagcagacga acatgaggac cactgaaacc cgacggcgca atgactacga 6901 tggtcacgag gcgctcctcc ggtagatctc tcatgcactc acatttcctt ttaagcaatg 6961 catttcaata cgcttttaat tatatcaagc gtcaagaatt tctcccgctt gcagttaatc 7021 cttacagggt ggcactttgt gttatgcaat ggaaaattca gtgacgcaat caaccatcat 7081 tggttggtga caacgcagta ctttctttat ttcacatcaa gcgaccagca catcgcccgc 7141 ttacagctaa tcctacctga gggtggcact ctgtgttatg taatggaatg tgcaatctcg 7201 caaccaaccg tcattggttg atggtgcggc caacacccgc gctcttgtat accggaaagg 7261 tt //