LOCUS JF803283 3794 bp RNA linear VRL 28-SEP-2011 DEFINITION Barley stripe mosaic virus strain Norwich segment alpha, complete sequence. ACCESSION JF803283 VERSION JF803283.1 KEYWORDS . SOURCE Barley stripe mosaic virus ORGANISM Barley stripe mosaic virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Virgaviridae; Hordeivirus. REFERENCE 1 (bases 1 to 3794) AUTHORS Lee,M.Y., Gorter,F. and Jackson,A.O. TITLE Direct Submission JOURNAL Submitted (13-APR-2011) Plant & Microbial Biology, University of California Berkeley, 111 Koshland Hall, Berekely, CA 94720-3102, USA FEATURES Location/Qualifiers source 1..3794 /mol_type="genomic RNA" /db_xref="taxon:12327" /strain="Norwich" /segment="alpha" /organism="Barley stripe mosaic virus" /host="Hordeum vulgare" CDS 92..3511 /codon_start=1 /protein_id="AEP04414.1" /translation="MASDEIVRNLISREEVMGNLISTASSSVRSPLHDVLCSHVRTIV DSVDKKAVSRKHVDVRRNISSEELQMLINAYPEYAVSSSACESGTHSMAACFRFLETE YLLDMVPMKETFVYDIGGNWFSHMKFRADREIHCCCPILSMRDSERLETRMMAMQKYM RGSKDKPLRLLSRYQNILREQAARTTAFMAGEVDAGVLDGEVFCENTFQDCVRRVPEG FLKTAIAVHSIYDIKVEEFASALKRKGITQAYGCFLFPPAVLIGQKEGILPSVDGHYL VENGRIKFFFANDPNAGYSHDLKDYLKYVEKTYVDIEDGVFAIELMQMRGDTMFFKIT DVTAAMYHMKYRGMKRDETFKCIPLLKNSSVVVPLFSWDNRSLKITSGLLPRTLVEQG AAFIMKNKEKDLNVAVLKNYLSAVNNSYIFNGSQVRDGVKIAPDLISKLAVTLYLREK VYRQRENSIISYFEQEMLHDPNLKAMFGDFLWFVPNTLSSVWKNMRKSLMEWFGYAEF DLTTFDICDPVLYVEIVDRYKIIQKGRIPLGEFFDCHEECENYELREKEKNDLAVKMA QKVTGTVTECEKDLGPLVQPIKEILVQLVMPNLVRALCRPRSPTSPLDLKSIPGSTPS HSSSDSEHSMTEEASCAIAGSVPTWEIATRKDLTFQRIDEDMSRRTGMPPRPKVTSSY NMNARAEFLYYQLCSVICERAQILSVIEDFRQNLIFSDKVAVPLNARFYSFQSLRPGW VFKTPSHSEVGHSYAVHFDFKTIGTDLEESLAFCRMVPISWDKSGKYIATTPHFPERH GYYVICDNTKLCNNWLIYNKLVDVYALVADRPLRFELIDGVPGCGKSTMILNSCDIRR EVVVGEGRNATDDLRERFKRKKNLNSKTANHRVRTLDSLLLAEGPCVPQADRFHFDEA LKVHYGAIMFCADKLGASEILAQGDRAQLPMICRVEGIELQFQSPDYTKTIINPKLRS YRIPGDVAFYLSAKEFYKVKGIPQKVITSNSVKRSLYARGETTPERFVSLLDVPVRKD THYLTFLQAEKESLMSHLIPKGVKKESISTIHEAQGGTYENVILVRLQRTPNEIYPGG PRSAPYIVVGTSRHTKTFTYCSVTDDKLLLDIADVGGIAHTPIRTFESHIV" /product="alpha protein" ORIGIN 1 gtatgtaagt tgcctttggg tgtaaaattt cttgcatgca cataatcgta atcgattctt 61 cttgatctct aaacaacact ttcccgttag catggctagc gatgagattg tccgcaatct 121 gatctcccgt gaggaggtga tgggtaattt gattagcaca gcttctagct cagtaaggtc 181 acccttacat gacgtactgt gctcgcacgt aaggaccatc gtcgattccg tggataagaa 241 agcggtcagt cgcaagcatg ttgatgtacg gcgcaacatc tcttctgagg aattgcagat 301 gttgataaat gcatatcctg aatatgccgt ttcatcctca gcttgtgaat ctggtactca 361 tagcatggcg gcttgttttc gatttctgga gacagaatat ctcttagata tggttccaat 421 gaaagagact tttgtttatg acattggtgg caactggttt tctcatatga agtttcgtgc 481 tgatagagaa attcattgtt gctgtccgat cttatctatg agagattctg aaagactgga 541 aacacgcatg atggcaatgc aaaaatatat gcgtggatcg aaagacaaac cgttacgctt 601 gttaagccgt tatcaaaata tcctgcgtga acaagcggcg agaacaactg cctttatggc 661 aggtgaggtg gatgcgggtg ttctcgatgg agaggtgttt tgtgagaaca cttttcaaga 721 ctgtgtgaga cgagtgcccg aaggtttttt gaagacagct atagcagttc atagcatcta 781 cgatatcaaa gtggaggaat ttgcgtctgc attgaaaaga aaaggtataa cacaggctta 841 tgggtgtttc ctgtttcctc ctgctgtatt gataggtcag aaggaaggca ttttaccttc 901 cgtggacggt cattacttgg tggagaatgg caggattaag ttcttctttg cgaatgatcc 961 gaatgccggt tactctcatg accttaagga ttatctgaag tatgtggaaa agacctatgt 1021 ggatatagag gatggagtgt ttgctattga gctgatgcaa atgcgaggtg ataccatgtt 1081 ctttaagatc acggatgtca ccgcagcaat gtatcatatg aaatacagag gtatgaaacg 1141 cgatgaaaca ttcaaatgca ttccgttgct aaagaattca tctgttgtcg tacctctatt 1201 ttcgtgggac aaccgttctt taaagatcac aagtggttta ctaccacgaa ctttggtcga 1261 gcagggtgcg gcttttatta tgaaaaacaa ggagaaggac ttgaacgttg ctgtgttgaa 1321 gaactatctt tccgctgtga acaactcata cattttcaac ggatcccagg ttagagatgg 1381 cgtgaaaatt gccccggatt taatctccaa gttggcagtg actctgtacc tgagagaaaa 1441 agtctatcga caaagagaaa attcaatcat aagttatttc gagcaagaaa tgcttcacga 1501 tcccaacttg aaagccatgt ttggagactt tctgtggttt gttccaaata ctctctcgag 1561 tgtctggaag aacatgcgaa aatcactgat ggaatggttt ggctacgcag aatttgactt 1621 gactactttt gatatttgcg atcccgttct ctatgtagag atagtggatc ggtataagat 1681 cattcaaaaa gggcgaattc cacttggtga gttctttgat tgtcatgaag aatgcgagaa 1741 ttacgaactg cgtgagaagg agaaaaacga cctagcggtg aaaatggccc agaaggtaac 1801 agggacggtg accgaatgcg agaaggacct gggacctctt gttcaaccga taaaagagat 1861 attggttcaa cttgtgatgc ccaatttggt cagagcgctg tgtagacctc gtagcccaac 1921 gtctcctttg gacttaaaaa gtatcccagg gtcaactcca tcacactcaa gttcagattc 1981 tgaacactct atgactgaag aagcgagctg cgcaattgcg ggtagcgtac caacatggga 2041 aattgcgact aggaaagatc taacctttca gcgaattgat gaagatatgt ctcgacgaac 2101 tggtatgcct ccaagaccaa aagtaacttc tagttacaac atgaatgcca gagctgagtt 2161 tctctactat caactgtgta gcgtgatttg tgaaagggct cagattttga gtgtcatcga 2221 agactttcgt cagaatttga tattctcaga taaagtggcc gttccattga acgctagatt 2281 ctacagtttt cagtcattga gacccggatg ggtgttcaaa actccatcgc atagtgaagt 2341 aggccacagt tatgcagtac attttgactt caagacaatt ggaaccgatt tggaagagag 2401 cctagctttt tgccgaatgg taccgatttc atgggataaa agcggcaaat acatcgcgac 2461 aactcctcat tttcccgaga gacatggtta ctacgtgatt tgtgacaaca ctaaattgtg 2521 taacaattgg cttatttaca ataagttagt tgacgtctac gcactagtgg ctgatagacc 2581 tctgagattt gagttgattg acggagttcc tggctgcgga aagtcaacca tgattttaaa 2641 cagctgtgat attcgacgcg aagttgttgt tggtgaagga cggaatgcaa ctgatgactt 2701 aagggagagg ttcaagcgta agaaaaattt gaatagtaag actgctaatc acagagttcg 2761 aacgcttgac agcttattac ttgctgaagg accttgtgta ccgcaagctg ataggtttca 2821 ttttgatgaa gctctaaaag ttcattacgg cgccataatg ttctgtgctg ataagcttgg 2881 tgcctcagaa attctcgctc agggagatag ggctcaattg ccaatgatct gtcgtgtaga 2941 aggtattgaa cttcaatttc aatctcctga ttacacgaag acgatcataa atcctaagct 3001 acgatcatac cgtatccctg gagatgttgc cttctatttg agtgctaagg aattttacaa 3061 agttaaagga atacctcaaa aggttataac ttctaacagt gtgaaacgtt ccttgtacgc 3121 tagaggcgaa acgactccgg aaagattcgt gagtttgctt gatgttccgg tgagaaaaga 3181 cacccactat ctaaccttct tacaagctga gaaggaaagt ttgatgagtc atttgattcc 3241 aaagggtgtg aagaaagagt ctatttcaac gattcatgag gcgcagggtg gtacctatga 3301 aaatgtgatt ctggtccgtt tgcaacggac gcccaatgaa atttatccgg gtggacctag 3361 gtccgcccct tacattgtgg ttgggacttc aaggcataca aaaactttca cttattgtag 3421 tgttacggac gataagttgc ttttagatat cgccgacgtc ggtggtattg cacatacacc 3481 tattcgtact tttgaatctc atatagttta aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 3541 aaaaaaaaaa aaaaatgttt gatcagatca ttcaaatctg atggtgccca tcaaccatat 3601 gatgggagtg tttacaagtc cactataatc gaacttgaaa aaccttgcct gaattggaaa 3661 ccatgaatct taacggattc tggagagaaa atttaggaat tggtatgtaa gctacaactt 3721 ccggtagctg cgtcacactt taagagtgtg catactgagc cgaagctcag cttcggtccc 3781 ccaagggaag acca //