LOCUS JF803284 3239 bp RNA linear VRL 28-SEP-2011 DEFINITION Barley stripe mosaic virus strain Norwich segment beta, complete sequence. ACCESSION JF803284 VERSION JF803284.1 KEYWORDS . SOURCE Barley stripe mosaic virus ORGANISM Barley stripe mosaic virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Virgaviridae; Hordeivirus. REFERENCE 1 (bases 1 to 3239) AUTHORS Lee,M.Y. and Jackson,A.O. TITLE Direct Submission JOURNAL Submitted (13-APR-2011) Plant & Microbial Biology, University of California Berkeley, 111 Koshland Hall, Berekely, CA 94720-3102, USA FEATURES Location/Qualifiers source 1..3239 /mol_type="genomic RNA" /db_xref="taxon:12327" /strain="Norwich" /segment="beta" /organism="Barley stripe mosaic virus" /host="Hordeum vulgare" CDS 90..686 /codon_start=1 /protein_id="AEP04417.1" /translation="MPNVSLTAKGGGHYNEDQWDTQVVEAGVFDDWWVHVEAWNKFLD NLRGINFSVASSRSQVAEYLAALDRDLPADVDRRFAGARGQIGLPNYLPAPKFFRLDK RTIAELTRLSRLTDQPHNNRDIELNRAKRATTNPSPPAQAPSENLTLRDVQPLKDSAL HYQYVLIDLQSARLPVYTRKTFERELALEWIIPDAEEA" /product="coat protein" /note="beta-a protein" CDS 804..2342 /codon_start=1 /protein_id="AEP04415.1" /translation="MDMTKTVEEKKTNGTDSVKNVSEDSTIPKVPTGKEMGAHGNDSS TSELKETLKVADQTPMSVDNGAKSKLDSSDRQVPSPKLATTVGKKPENPKIKKPKKKR NQKPAQPSRPNDLKDETRESPQVGENVSENYTGVSKEAARQRKTPKSVKMQSNLADKF KANDTRRSELINKFQQFVHETCLKSDFEYTGRQYFRARSNFFEMIRLTSLYDKHLKEC MARACTLERERLKRKLLLVRALKPAVDFLTGIISGVPGSGKSTIVRTLLKGEFPAVCA LANPALMNDYSGIEGVYGLDDLLLSAVPITSDLLIIDEYTLAESAEILLLQRRLRASM VLLVGDVAQGKATTASSIEYLTLPVIYRSETTYRLGQETASLCSKQGNRMVSKGGKDK VIITDYDGETDETEKNIAFTVDTVRDVKDCGYDCALAIDVQGKEFDSVTLFLRNEDRK ALADRHLRLVALSRHKSKLIIRADAEIRQAFLTGDIDLSSKASNSHCYSAKPDEDHSW FKAK" /product="beta-b protein" /note="TGB1" CDS 2311..2706 /codon_start=1 /protein_id="AEP04416.1" /translation="MKTTVGSRPNKYWPIVAGIGVVGLFAYLIFSNQKHSTESGDNIH KFANGGSYRDGSKSISYNRNHPFAYGNASSPGMLLPAMLTIIGIISYLWRTRDSVLGN SGGNNSCGEDCQGECLNGHSRRSLLCDIG" /product="beta-d protein" /note="TGB2" CDS 2516..2983 /codon_start=1 /protein_id="AEP04418.1" /translation="MAMPHPLECCCPQCLPSSESFPIYGEQEIPCSETQAETTPAERI VKANVLTDILDDHYYAILASLFIIALWLLYIYLSSVPMETGPYFYQDLNSVKIYGVGA TNPEVIAAIHHWQKYPFGESPMWGGLVSVLSILLKPLTLVLALSFFLLLSSKK" /product="beta-c protein" /note="TGB3" ORIGIN 1 gtaaaagaaa aggaacaacc ctgttgttgt tcgacactat actaaatata tattatctta 61 ctagtgcatt tcttttaccg cttcacagta tgccgaacgt ttctttgact gctaagggtg 121 gaggacacta caacgaggat caatgggaca cacaagttgt ggaagccgga gtatttgacg 181 attggtgggt ccacgtagaa gcctggaata aatttctaga caatttacgt ggtatcaact 241 ttagcgttgc ttcctctcgg tcgcaagttg ctgaatactt agctgcgtta gatcgtgatc 301 tacctgctga tgtagacaga cggtttgcag gtgctagagg acaaattggt ttacccaatt 361 atcttcctgc accaaaattc tttcgtctcg ataagcgaac tattgctgaa ctgactagac 421 tctctcgtct tacggatcag ccgcacaaca atcgtgatat agagcttaac cgagcgaaaa 481 gagccacaac taacccatct cccccggcgc aggcaccgtc ggagaatctt actcttcgtg 541 atgttcaacc gttaaaggat agtgcgttgc attatcaata cgtgttgatt gacctacaga 601 gtgcgagact cccggtgtat accaggaaga ctttcgaacg tgaactcgct ttggaatgga 661 tcattccaga tgccgaggaa gcgtgacctg ctgtcgaagc ggtaaaagga tgtacatatg 721 tatcttattt attttgttta tttattttct tttactttta gtttttgctt tttacgcttt 781 aactagatgt attgacttta gccatggaca tgacgaaaac tgtcgaggaa aagaaaacaa 841 atggaactga ttcagtgaaa aatgtttctg aagattcgac gattcctaaa gttccaactg 901 gaaaggaaat gggtgcacat ggtaacgatt cctctacttc tgaattaaag gaaactctga 961 aagttgccga tcagactcca atgtccgttg acaatggtgc caaatccaaa ttggattctt 1021 ctgatagaca agttcctagc cctaagttgg caacaactgt gggaaagaaa cctgagaatc 1081 ctaaaattaa gaagcccaag aagaaacgaa accaaaaacc tgctcaaccg agcaggccca 1141 atgaccttaa agatgagact agggaatcac ctcaagtggg tgagaatgtg agtgagaact 1201 atactggggt ttctaaggaa gcagctaggc aaaggaagac gcccaagtct gtgaaaatgc 1261 aaagcaatct ggccgataag ttcaaagcga atgatactcg tagatcggaa ttaattaaca 1321 agtttcagca atttgtgcat gagacctgtc ttaaatctga ttttgagtac actggtcgac 1381 agtatttcag agctagatca aatttctttg aaatgattag gctcacatcc ttgtatgaca 1441 aacatctaaa ggaatgtatg gcgcgagcct gcaccctaga acgagaacga ttgaagcgta 1501 agttactcct agtacgagct ttgaaaccag cagtagactt ccttacggga atcatctctg 1561 gagttcctgg ctcaggaaaa tcaaccattg tgcgtacttt gctcaaaggt gaatttccgg 1621 ctgtttgtgc tttggccaat cctgccttaa tgaacgatta ttctggtatt gaaggcgttt 1681 acgggttaga tgacctgttg ctttctgcag ttccgataac gtctgattta ttgatcatag 1741 atgaatatac acttgctgag agcgcggaaa tcctgttgct acaacgaaga ctcagagcct 1801 ctatggtgtt gttagtcggg gatgtagctc aaggaaaagc caccactgct tccagtattg 1861 agtatttaac tctgccggtg atctacagat cagagacgac ttatcgtttg ggacaagaga 1921 ctgcttcgct ttgcagcaag cagggtaaca gaatggtttc aaagggagga aaggataaag 1981 tgatcattac tgattacgat ggcgaaacag atgaaacgga gaaaaatatc gcttttactg 2041 tcgatacagt tcgagatgtg aaagattgcg ggtacgattg tgccctggca attgatgtgc 2101 aagggaaaga attcgattca gtgactttat tcctaaggaa cgaagaccgg aaagctttag 2161 cagataggca tttgcgttta gttgctttga gcagacataa gtcgaagtta atcatcaggg 2221 ccgacgcgga aattcgtcaa gcgttcctga caggtgatat tgacttgagc tctaaggcga 2281 gtaactctca ttgttattct gcaaaaccgg atgaagacca cagttggttc aaggccaaat 2341 aagtattggc caattgtcgc cggaatcggt gtcgttggat tgtttgcgta tttgattttt 2401 tcaaatcaaa aacattctac ggaatccggt gataatattc acaaattcgc aaacggaggt 2461 agttacagag acgggtcaaa aagtataagt tataatcgta atcatccttt tgcctatggc 2521 aatgcctcat cccctggaat gttgctgccc gcaatgctta ccatcatcgg aatcatttcc 2581 tatttatggc gaacaagaga ttccgtgctc ggaaactcag gcggaaacaa ctcctgcgga 2641 gaggattgtc aaggcgaatg tcttaacgga cattctcgac gatcattact atgcgatatt 2701 ggctagtctt tttatcattg ctttatggct attgtatata tatctaagca gtgtacctat 2761 ggagactggt ccctacttct atcaggatct aaactctgtg aagatctatg gagtaggggc 2821 tacgaatcca gaagttattg cggccatcca tcattggcag aagtaccctt ttggggagtc 2881 tccgatgtgg ggaggtttag tcagcgtttt gagtattctt cttaaaccac tgacattagt 2941 tttagcgtta agcttttttc ttttactttc ttcaaaaaag tgaaaaaaaa aaaaaaaaaa 3001 tgtttgatca gatcattcaa atctgatggt gcccatcaac catatgatgt gagtgtttac 3061 aagtccacta taatcgaact tgaaaaactt tgcctgaatt ggaaaccatg aatcttaacg 3121 gattctggag agaaaattta ggaattggta tgtaagctac aacttccggt agctgcgtca 3181 cactttaaga gtgtgcatac tgagccgaag ctcagcttcg gtcccccaag ggaagacca //