LOCUS KJ433977 3763 bp RNA linear VRL 04-MAY-2014 DEFINITION Barley stripe mosaic virus strain Qasr Ibrim segment alpha, complete sequence. ACCESSION KJ433977 VERSION KJ433977.1 KEYWORDS . SOURCE Barley stripe mosaic virus ORGANISM Barley stripe mosaic virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Virgaviridae; Hordeivirus. REFERENCE 1 (bases 1 to 3763) AUTHORS Smith,O., Clapham,A., Rose,P., Liu,Y., Wang,J. and Allaby,R.G. TITLE A complete ancient RNA genome: identification, reconstruction and evolutionary history of archaeological Barley Stripe Mosaic Virus JOURNAL Sci Rep 4, 4003 (2014) PUBMED 24499968 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3763) AUTHORS Smith,O., Clapham,A., Rose,P., Liu,Y., Wang,J. and Allaby,R.G. TITLE Direct Submission JOURNAL Submitted (12-FEB-2014) School of Life Sciences, University of Warwick, Gibbet Hill Road, Coventry, West Midlands CV4 7AL, United Kingdom COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. R6 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3763 /mol_type="genomic RNA" /db_xref="taxon:12327" /strain="Qasr Ibrim" /segment="alpha" /organism="Barley stripe mosaic virus" CDS 92..3511 /codon_start=1 /protein_id="AHY22367.1" /translation="MASDEIVRNLISREEVMGNLISTASSSVRSPLHDVLCSHVRTIV DSVDKKAVSRKHVDVRRNISSEELQMLINAYPEYAVSSSACESGTHSMAACFRFLETE YLLDMVPMKDTFVYDIGGNWFSHMKFRADREIHCCCPILSMRDSERLETRMMAMQKYM RGSKDKPLRLLSRYQNILREQAARATAFVAGEVNAGVLDGEVFCENTFQDCVREVPEG FLKTAIAVHSIYDIKVEEFASALKRKGITQAYGCFLFPPAVLIGQKEGILPSVDGHYL VENGRIKFFFANDPNAGYSHDLKDYLKYVEKAYVDIKDGVFAIELMQMRGDTMFFKIT DVTAAMYHMKYRGMKRDETFKCIPMLKNSSVVVPLFSWDNHSLKITSGLLPRTLVEQG AAFIMKNKEKDLNVAVLKNYLSAVNNSYIFNGSQVRDGVKIAPDLISKLAVTLFLREK VYRQRENSIISHFEQEMLRDPNLKAMFGDFLWFVPNTLSSVWKNMRKSLMEWFGYADF DLTTFDICDPVLYVEIVDRYKIIQKGRIPLGEFFDCHEECENYELREKEKNDLAVKMA QKVTGTVTECEKDEGHLVQPTKQILVQLMMPHIVRALCKPRSPTSPLDFSSIPGSTPS HSSSDSEQSMTEEASLSIAGSVPTWEIATKKDLTFQRINEDMSRRTGMPPRPKVTSSY NMNARAEFLYYQLCSVICERAQILSVIEDFRQNLIFSDKVAVPLNARFYSFQSLXPGW VYKTPSYSEVGHSYAVHFDFKTIGNELEESLAFCRLVPISWDKSGRYIATTPYFPERH GYYVICDNTKLCNNWLIYNKLVDVYALVTDRPLKFELIDGVPGCGKSTMILNSCDIRR EVVVGEGRNATDDLRERFKRKKNLNSKIANHRVRTLDSLLLAEGPCIPQADRFHFDEA LKVHYGAIMFCADKLGASEILAQGDRAQLPMICRVEGIELQFQSPDYAKTIINPKLRS YRIPGDVAFYLSAKEFYKVKGVPQKVTTSNSVKRSLYARGETTQERFVSLLDVPVRKD THYLTFLQAEKESLMSHLIPKGVKKESISTIHEAQGGTYENVILVRLQRTPNEIYPGG LRSAPYIVVGTSRHTKTFTYCSVTDDKLLLDIADVGGIAHTPIRTFESHIV" /product="alpha protein" ORIGIN 1 gtatgtaagt tgcctttggg tgtgaaattt cttgcatgca cataatcgta atcgattcat 61 cgtgatctct aaacaacact ttcccgttag catggctagc gatgagattg tccgtaatct 121 gatctcccgt gaggaggtga tgggtaattt gattagcaca gcttccagtt cagtaaggtc 181 gcccttacat gacgtactgt gctcgcacgt aaggaccatc gtcgattccg tggataagaa 241 agcggtcagt cgcaagcatg ttgatgtacg gcgcaacatc tcctctgagg agttgcagat 301 gttgataaat gcatatcctg aatatgccgt ttcatcttca gcttgtgaat ctggtactca 361 tagcatggcg gcttgttttc gatttctgga gacagaatat cttttagata tggttccaat 421 gaaagatact tttgtctatg atattggggg taactggttt tctcacatga agtttcgtgc 481 tgacagagaa attcattgtt gctgtccaat cttatctatg agagattctg aaagactgga 541 aacacgcatg atggcaatgc aaaaatatat gcgtggatcg aaagacaaac cgttacgctt 601 gctaagccgt tatcaaaata tcctgcgtga acaagcggcg agagcaactg cctttgtggc 661 aggtgaggtg aacgcgggtg ttctcgatgg agaggtgttt tgtgagaaca cttttcaaga 721 ctgtgtgaga gaggtgcccg aaggtttttt gaagacagct atagcagttc atagcattta 781 cgatatcaaa gtggaagaat ttgcgtctgc attgaaaaga aaaggtataa cacaggctta 841 tgggtgcttc ctgtttcctc ctgctgtatt gataggtcag aaggaaggta ttttaccttc 901 cgtggacggt cattatttgg tggagaatgg caggattaag tttttctttg caaatgatcc 961 gaatgccggt tactcgcacg accttaagga ttatctgaag tatgtggaaa aggcctatgt 1021 ggatataaag gatggagtgt ttgctattga gctgatgcaa atgcgaggtg ataccatgtt 1081 ctttaagatc acggacgtca ctgcagcaat gtatcatatg aaatacagag gaatgaaacg 1141 tgacgaaaca ttcaaatgca ttccgatgct aaagaattca tctgttgtcg tacctctatt 1201 ttcatgggac aatcattctt taaagatcac aagtggttta ctaccacgaa ctttggtcga 1261 gcagggtgcg gcatttatta tgaaaaacaa ggaaaaagac ttgaacgttg ctgtgttgaa 1321 gaattatctt tccgctgtga acaattcata cattttcaac ggatctcagg ttagagatgg 1381 tgtgaaaatt gctccggatt taatctccaa attggcagtg actctgttcc tgagagaaaa 1441 ggtctatcga caaagagaaa attcaatcat aagtcatttc gaacaagaaa tgcttcgcga 1501 tcccaacttg aaagccatgt ttggagactt tctgtggttt gttccaaata ctctttcgag 1561 tgtttggaag aacatgcgaa aatcactgat ggaatggttt ggttacgcag attttgactt 1621 gactactttt gatatttgcg atcccgttct ctatgtagag atagtggatc ggtataagat 1681 cattcaaaaa gggcgaattc cacttggtga gttctttgat tgtcatgaag aatgcgagaa 1741 ttacgaacta cgtgagaagg agaaaaatga cctagcggtg aaaatggccc agaaggtaac 1801 agggacggtg accgaatgcg agaaggacga gggacatctt gttcagccga caaaacagat 1861 actagttcaa cttatgatgc cccatattgt cagagcgctg tgtaaacctc gtagcccaac 1921 gtctcctttg gactttagca gtatcccagg gtcaactcca tcacactcaa gttcagattc 1981 tgaacaatct atgactgaag aagcgagctt atccattgcg ggtagcgtac caacatggga 2041 aattgcgact aagaaagatc taacctttca gcgaattaat gaagatatgt ctcgacgaac 2101 tggtatgcct ccaagaccaa aagtaacttc cagttacaac atgaacgcca gagccgagtt 2161 tctctactat caactgtgta gcgtgatttg tgaaagggcc cagattttga gtgtcatcga 2221 agactttcgt caaaacttga tattctcaga taaggtggcc gttccattga acgctagatt 2281 ttacagtttt cagtcgttgy aacctggatg ggtgtacaag actccatcgt atagtgaagt 2341 aggccacagt tatgcagtac attttgactt caagacgatt ggaaatgagt tggaagaaag 2401 cctagctttt tgccgattgg taccgatttc atgggataaa agcggcagat acatcgcgac 2461 aactccttat tttcccgaga gacatggtta ctacgtgata tgtgacaaca ctaaattgtg 2521 taacaattgg cttatttaca ataagttagt tgacgtctac gcattggtga ctgatagacc 2581 tctgaaattc gagttgattg acggagttcc tggctgtgga aagtctacta tgattttaaa 2641 cagctgtgat attcgacgcg aagttgttgt tggtgaagga cggaatgcga ctgatgactt 2701 aagggagagg ttcaagcgaa agaaaaattt gaatagtaaa attgctaatc atagagttcg 2761 aacgcttgac agcttattac ttgctgaagg accttgtata ccgcaagctg ataggtttca 2821 ttttgatgaa gctctaaaag ttcattacgg tgctataatg ttctgtgctg ataagcttgg 2881 tgcctcagaa attctcgctc aaggagatag ggctcaattg ccaatgatct gtcgtgtaga 2941 aggaattgaa cttcaatttc agtctcctga ttacgcgaag acgatcataa atcctaagct 3001 acgatcatac cgtatccctg gggatgttgc cttctatttg agtgctaagg agttttacaa 3061 agttaaagga gtaccccaaa aggttacaac ttctaacagt gtgaagcgtt ccttgtacgc 3121 tagaggtgaa acaactcagg aaagattcgt gagtttgctt gatgttccag tgagaaaaga 3181 cacccactat ctaaccttct tacaagctga gaaggaaagt ttgatgagtc atttgattcc 3241 aaagggtgtg aagaaagagt ctatttcaac gattcatgag gcacagggtg gtacctatga 3301 aaatgtgatt ctggtccgtt tgcaacggac tcccaacgaa atttatccgg gtggacttag 3361 gtccgcccct tacatcgtgg ttgggacttc aaggcatacg aaaactttca cttattgtag 3421 tgttacggac gataagttgc ttttagatat cgccgatgtc ggtggtattg cacatacacc 3481 tattcgtact tttgagtctc atatagtttg aaaaaaaaaa aaaaatgttt gatcagatca 3541 ttcaaatctg atggtgccca tcaaccatat gatgggagtg tttacaagtc cactataatc 3601 gaacttgaaa accttgcctg aattggaaac catgaatctt aacggattct ggagagaaaa 3661 tttaggaatt ggtatgtaag ctacaacttc cggtagctgc gtcacacttt aagagtgtgc 3721 atactgagcc gaagctcagc ttcggtcccc caagggaaga cca //