LOCUS KJ433979 3163 bp RNA linear VRL 04-MAY-2014 DEFINITION Barley stripe mosaic virus strain Qasr Ibrim segment gamma, complete sequence. ACCESSION KJ433979 VERSION KJ433979.1 KEYWORDS . SOURCE Barley stripe mosaic virus ORGANISM Barley stripe mosaic virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Virgaviridae; Hordeivirus. REFERENCE 1 (bases 1 to 3163) AUTHORS Smith,O., Clapham,A., Rose,P., Liu,Y., Wang,J. and Allaby,R.G. TITLE A complete ancient RNA genome: identification, reconstruction and evolutionary history of archaeological Barley Stripe Mosaic Virus JOURNAL Sci Rep 4, 4003 (2014) PUBMED 24499968 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3163) AUTHORS Smith,O., Clapham,A., Rose,P., Liu,Y., Wang,J. and Allaby,R.G. TITLE Direct Submission JOURNAL Submitted (12-FEB-2014) School of Life Sciences, University of Warwick, Gibbet Hill Road, Coventry, West Midlands CV4 7AL, United Kingdom COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. R6 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3163 /mol_type="genomic RNA" /db_xref="taxon:12327" /strain="Qasr Ibrim" /segment="gamma" /organism="Barley stripe mosaic virus" CDS 454..2403 /codon_start=1 /protein_id="AHY22372.1" /translation="MDVVKKFAVMSVTVVAGPVLTLFSPVVVTFGTGLIAVSLVKRLL QEHPRVLAHDHEHCPGGSESSSSSCATAPILRNLLQDQCDSENIGCNSSACSPSGIVK VTRQVVEVERGLYRDIFQDNEIPSVMEEKLQKLLYSEGEKIRRRCQFEASTMHSRKVK VPEVGTIPDIQTWFDATFPGNSVRFSDFDGYTVATEDINMDVQDCRLKFGKNFRPYEF KESLKPALRTAMPEKRQGSLIESVLAFRKRNLAAPRLQGALNEWHTIENVLKKALKVF FFEDLIDRTDHCTYESALRWWDKQSVTARAQLVADQRRLCDVDFTTYNFMIKNDVKPK LDLTPQVEYAALQTVVYPDKIVNAFFGPIIKEINERIIRALRPHVVFNSRMTADELNE TVAFLTPHKYRALEIDFSKFDKSKTGLHIKAVIGLYKLFGLDGLLKVLWEKSQFQTYV KDRNFGLEAYLLYQQKSGNCDTYGSNTWSAALALLDCLPLEDAHFCVFGGDDSLILFD QGYIISDPCRQLAGTWNLECKVFDFKYPAFCGKFLLCIDGKYQFVPDAAKFITKLGRT DVRDVEVLSEIYISINDNYKSYKDFKVLDALDKALVDRYRSPYSAISALVSLCYHIFD FNKFKLLFNCEGKFVDKKLRKDFEW" /product="RNA-directed RNA polymerase" CDS 2446..2907 /codon_start=1 /protein_id="AHY22373.1" /translation="MMATFSCVCCGTLTWSTYCGKRCERKHVYSETRNKRLELYKKYL LEPQKCALNEIVGHSCGMLCSIAEEACDQLPIVSKFCGQKHADLYDLLLKRSEQELLL EFLQKKMQELKLSHIVKMAKLESEVNAIRESIGSSCEDSVGCDDSSSVSKL" /product="gamma-B protein" ORIGIN 1 gtatagcttg agcattaccg tcgtgtaatt gcaacacttg gcttaccaaa taacgctaga 61 gcgttcacga aacaaatcaa aactttggca tggatgttgt gaagaaattc gccgtcatgt 121 cagtgactgt agtagcaggt cccgtcctta cgttctcctc acctgtggtg gtgacgtttg 181 gaacaggctt aattgccgta tctttggtga aacggttgtt acaggaacac ccccgtgtac 241 ttgctcacga tcacgaacat tgcccaggtg gttctgagag cagttctagc tcttgtgcta 301 ccgcgcctat tctacgtaat cttttgcaag atcagtgcga ctcagagaat attggatgca 361 attctagcgc ctgttctccg tctggaattg tgaaagttac aaggcaggtg gtggaagttg 421 agcgtggtct ttaccgggac ataaaatttt ggcatggatg ttgtgaagaa attcgccgtc 481 atgtcagtga ctgtagtagc aggtcccgtc cttacgttgt tttcacctgt ggtggtgacg 541 tttggaacag gcttaattgc cgtatctttg gtgaaacggt tgttacagga acacccccgt 601 gtacttgctc acgatcacga acattgccca ggtggttctg agagcagttc tagctcttgt 661 gctaccgcgc ctattctacg taatcttttg caagatcagt gcgactcaga gaatattgga 721 tgcaattcta gcgcctgttc tccgtctgga attgtgaaag ttacaaggca ggtggtggaa 781 gttgagcgtg gtctttaccg ggatattttt caggacaacg aaattccatc agtcatggaa 841 gagaaactcc agaaactgct ttattcagag ggtgagaaaa ttcgaagacg ttgtcaattt 901 gaagcatcaa cgatgcactc acgcaaagta aaggttccgg aggtaggtac tatcccagat 961 atccaaactt ggttcgatgc tacgtttcct ggtaattccg ttaggttttc tgacttcgac 1021 ggttatactg ttgctacgga ggacattaac atggatgttc aggattgtag acttaagttc 1081 gggaagaatt ttcgaccgta tgaatttaag gaatcactga aaccagcact gaggacagca 1141 atgccagaaa agcgacaggg tagtttgatt gaaagtgtgc tggcctttcg taaaagaaat 1201 ttggctgcgc ccagattgca gggagctttg aatgaatggc atacaattga gaatgtgctg 1261 aagaaggcgt taaaggtatt cttctttgaa gatttaattg atcggacgga tcattgcact 1321 tacgagtcag cactcagatg gtgggataaa caatcagtga cagctcgagc acagctcgtg 1381 gcggaccaac ggaggttatg tgatgttgac ttcacgactt ataacttcat gataaaaaat 1441 gatgtaaagc cgaagttaga tctaacacct caagttgaat atgcagcctt gcagactgtt 1501 gtgtatcctg ataagatagt taatgctttc ttcggtccga tcataaagga aattaatgaa 1561 cggattatca gagcgcttag acctcatgtg gtctttaatt ctcgtatgac tgctgatgaa 1621 ctgaatgaaa cagttgcctt tttgacacct cacaagtaca gagccttaga gattgacttt 1681 tcaaaatttg ataaatcaaa gactgggctt catatcaaag ctgtcattgg actctacaag 1741 ctctttggtc tagatggcct gttgaaagta ctctgggaga aatcgcaatt tcagacttac 1801 gtgaaagata gaaacttcgg tctcgaagca tatctattat atcagcaaaa gtcaggaaac 1861 tgtgacactt acggttcgaa cacctggtct gccgccttgg cgctgttaga ttgtcttcct 1921 ttggaagatg cgcatttctg tgtttttggt ggtgatgatt cattgatatt gtttgatcag 1981 ggatacataa tatccgaccc atgccggcaa cttgccggta cttggaacct tgaatgtaaa 2041 gtgttcgact ttaagtaccc cgcattttgt ggtaaatttc tgctgtgtat cgatggaaaa 2101 tatcagtttg ttccagatgc ggcaaagttt atcacaaaat taggtagaac tgatgtgaga 2161 gatgtagaag ttttgagtga gatttatatc tctatcaatg acaattacaa atcttacaaa 2221 gactttaagg tacttgatgc tttggataag gctttagtgg acagatatcg atccccttat 2281 agtgctattt ctgctttggt ttctttgtgt tatcatatct ttgactttaa taagtttaag 2341 ttgctgttta attgtgaagg gaaatttgtg gataagaagc tgagaaagga cttcgagtgg 2401 tgaactctag ggcctgatgt ttaaatctat tgtatttacc ttcgcatgat ggctactttc 2461 tcttgtgtgt gttgtggtac cttaacttgg agcacttatt gtggtaagag atgtgagcga 2521 aagcatgtat attctgaaac gagaaataaa agattggaac tttacaagaa gtatctattg 2581 gaaccgcaaa aatgcgccct gaatgaaatc gttggacaca gttgtggaat gctatgctcc 2641 attgcggaag aggcttgtga tcagctgcca atcgtgagta agttctgtgg ccaaaagcat 2701 gcggatctgt atgatttact tctgaaacgt tctgagcagg agttacttct tgaatttctc 2761 cagaagaaga tgcaagagct gaaactttct catatcgtga agatggctaa gcttgaaagt 2821 gaggttaacg caatacgtga gtccataggt tcttcttgtg aagattctgt tggatgtgat 2881 gactcttctt ccgtttctaa gttgtaaaaa aaaaaaaaaa aaaaatgttt gatcagatca 2941 ttcaaatctg atggtgccca tcaaccatat gatgggagtg tttacaagtc cactataatc 3001 gaacttgaaa accttgcctg aattggaaac catgaatctt aacggattct ggagagaaaa 3061 tttaggaatt ggtatgtaag ctacaacttc cggtagctgc gtcacacttt aagagtgtgc 3121 atactgagcc gaagctcagc ttcggtcccc caagggaaga cca //