LOCUS NC_003478 3164 bp ss-RNA linear VRL 10-FEB-2015 DEFINITION Barley stripe mosaic virus RNA 3, complete sequence. ACCESSION NC_003478 VERSION NC_003478.1 DBSOURCE BioProject accession PRJNA15031 KEYWORDS RefSeq. SOURCE Barley stripe mosaic virus ORGANISM Barley stripe mosaic virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Virgaviridae; Hordeivirus. REFERENCE 1 (bases 1 to 3164) AUTHORS Gustafson,G., Hunter,B., Hanau,R., Armour,S.L. and Jackson,A.O. TITLE Nucleotide sequence and genetic organization of barley stripe mosaic virus RNA gamma JOURNAL Virology 158 (2), 394-406 (1987) PUBMED 3590624 REFERENCE 2 (bases 1 to 3164) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (27-MAR-2002) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from M16576. Draft entry for [1] kindly provided by G.Gustafson, 8-DEC-1987. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..3164 /mol_type="genomic RNA" /db_xref="taxon:12327" /clone="pBSM[49,244]." /tissue_lib="ATCC-PV43" /segment="RNA 3" /organism="Barley stripe mosaic virus" repeat_region 74..439 /note="366 bp tandem repeat copy A" gene 89..2404 /locus_tag="BSMVs3gp1" /db_xref="GeneID:962675" CDS 89..2404 /locus_tag="BSMVs3gp1" /db_xref="GeneID:962675" /codon_start=1 /protein_id="NP_604481.1" /translation="MDVVKKFAVMSVTVVAGPVLTLSSPVVVTFGTSLIAVSLVKRLL QEQPRVIAHDHEHYPGGSESSSSSCATAPILRNLSRDQCDSENIGCSSSACSPSEIVK VTRQVVEVERGLYRDKQQFGMDVVKKFAVMSVTVVAGPVLTLSSPVVVTFGTSLIAVS LVKRLLQEQPRVIAHDHEHYPGGSESSSSSCATAPILRNLSRDQCDSENIGCSSSACS PSEIVKVTRQVVEVERGLYRDIFQDNEIPSVMEEKLQKLLYSEGEKIRRRCQFEASTM HSRKVKVPEVGTIPDIQTWFDATFPGNSVRFSDFDGYTVATEDINMDVQDCRLKFGKT FRPYEFKESLKPVLRTAMPEKRQGSLIESVLAFRKRNLAAPRLQGALNEWHTIENVLK KALKVFFFEDLIDRTDHCTYESALRWWDKQSVTARAQLVADQRRLCDVDFTTYNFMIK NDVKPKLDLTPQVEYAALQTVVYPDKIVNAFFGPIIKEINERIIRALRPHVVFNSRMT ADELNETVAFLTPHKYRALEIDFSKFDKSKTGLHIKAVIGLYKLFGLDGLLKVLWEKS QYQTYVKDRNFGLEAYLLYQQKSGNCDTYGSNTWSAALALLDCLPLEDAHFCVFGGDD SLILFDQGYIISDPCRQLAGTWNLECKVFDFKYPAFCGKFLLCIDGKYQFVPDAAKFI TKLGRTDVRDVEVLSEIYISINDNYKSYKDFKVLDALDKALVDRYRSPYSAISALVSL CYHIFDFNKFKLLFNCEGKFVDKKLRKDFEW" /product="RNA-directed RNA polymerase" repeat_region 440..805 /locus_tag="BSMVs3gp1" /note="366 bp tandem repeat copy B" gene 2420..2908 /locus_tag="BSMVs3gp2" /db_xref="GeneID:962674" mRNA 2420..2908 /locus_tag="BSMVs3gp2" /db_xref="GeneID:962674" /product="ORF2 mRNA" CDS 2447..2908 /locus_tag="BSMVs3gp2" /db_xref="GeneID:962674" /codon_start=1 /protein_id="NP_604482.1" /translation="MMATFSCVCCGTSTTSTYCGKRCERKHVYSETRNKRLELYKKYL LEPQKCALNGIVGHSCGMPCSIAEEACDQLPIVSRFCGQKHADLYDSLLKRSEQELLL EFLQKKMQELKLSHIVKMAKLESEVNAIRKSVASSFEDSVGCDDSSSVSKL" /product="gamma B protein" misc_feature 2907..2926 /note="internal poly-A region" misc_feature 2927..3164 /note="tRNA-like structure" ORIGIN 1 gtatagcttg agcattaccg tcgtgtaatt gcaacacttg gcttgccaaa taacgctaaa 61 gcgttcacga aacaaacaac aattcggcat ggatgttgtg aagaaattcg ccgtcatgtc 121 agtgactgta gtagcaggtc ccgtccttac gctttcatca cctgtggtgg tgacgtttgg 181 aacaagctta attgccgtat ctttggtgaa acggttgcta caggaacaac cccgtgtaat 241 tgctcacgat cacgaacatt acccaggtgg ttctgagagc agttctagct cttgtgctac 301 cgcgcctatt ttacgtaatc tttcgcgaga tcagtgcgat tcagagaata ttggatgcag 361 ttctagcgcc tgttctccgt ctgaaattgt gaaagttaca aggcaggtag tggaagttga 421 acgtggtctt taccgggaca aacaacaatt cggcatggat gttgtgaaga aattcgccgt 481 catgtcagtg actgtagtag caggtcccgt ccttacgctt tcatcacctg tggtggtgac 541 gtttggaaca agcttaattg ccgtatcttt ggtgaaacgg ttgctacagg aacaaccccg 601 tgtaattgct cacgatcacg aacattaccc aggtggttct gagagcagtt ctagctcttg 661 tgctaccgcg cctattttac gtaatctttc gcgagatcag tgcgattcag agaatattgg 721 atgcagttct agcgcctgtt ctccgtctga aattgtgaaa gttacaaggc aggtagtgga 781 agttgaacgt ggtctttacc gggacatttt tcaggacaac gaaatcccat cagtcatgga 841 agagaaactg cagaaactcc tttactctga gggtgagaag attcgaagac gttgccaatt 901 tgaagcatca acgatgcact cacgcaaagt aaaggttccg gaggtaggta ctatcccaga 961 tatccaaact tggttcgatg ctacgtttcc tggtaactcc gttaggtttt ctgatttcga 1021 cggttatact gttgctacgg aggacattaa catggatgtt caggattgta gacttaagtt 1081 cgggaagact tttcgacctt atgaatttaa ggaatcactg aaaccagtac tgaggacagc 1141 aatgccagaa aagcgacagg gtagtttgat tgaaagtgtg ctggcctttc gtaaaagaaa 1201 tttggctgcg cccagattac aaggggcttt gaatgaatgg cacacaattg agaatgtgct 1261 gaagaaggcg ttaaaggtat tcttctttga agatttaatt gatcgaacgg atcattgcac 1321 ttacgagtca gcgctcagat ggtgggataa acaatcagtg acggctcgag cgcagctcgt 1381 ggcggaccaa cggaggttat gtgatgttga cttcacgact tataacttca tgataaaaaa 1441 tgatgtaaaa ccgaagttag atctaacacc tcaagttgaa tatgcagctt tgcagactgt 1501 tgtgtatcct gataagatag tcaatgcttt ctttggtccg atcataaagg agattaatga 1561 acggatcatc agagcgctta gacctcatgt ggtctttaat tctcgtatga ctgctgatga 1621 actgaatgaa acagttgcct ttttgacacc tcacaagtac agagccttag agattgactt 1681 ttcaaaattt gataaatcaa agactgggct tcatatcaaa gctgtcattg gactctataa 1741 gctctttggt ctagatggcc tgttaaaagt actctgggaa aaatcgcaat atcagactta 1801 cgtgaaagat agaaacttcg gtctcgaggc atatctatta tatcagcaaa agtcaggaaa 1861 ttgtgacact tacggttcga acacctggtc tgccgccttg gcgttgttag attgtcttcc 1921 tttggaagat gcacatttct gtgtatttgg tggtgatgat tcattgatat tgtttgatca 1981 gggatacata atttccgacc catgccggca acttgccggt acttggaatc ttgaatgtaa 2041 agtgttcgac ttcaagtacc ccgcattttg tggtaaattt ctgctgtgca tagatggaaa 2101 atatcagttt gttccagatg cggcaaaatt tatcacaaaa ttaggtagaa ctgatgtgag 2161 agatgtagaa gttttgagtg agatttatat ctctatcaat gacaattaca aatcttacaa 2221 agactttaag gtgcttgatg ctttggataa ggctttagtg gacagatatc gatcccctta 2281 tagtgctatt tctgctttgg tttctttatg ttatcatatc tttgacttta ataagtttaa 2341 gttgctgttt aattgtgaag ggaaatttgt ggataagaag ctgagaaagg acttcgagtg 2401 gtgaactctg ggtcctgatg tttaaatcta ctgtatttac cttcgcatga tggctacttt 2461 ctcttgtgtg tgttgtggta cctcaactac aagtacttac tgtggtaaga gatgtgagcg 2521 aaagcatgta tattctgaaa caagaaataa gagattggaa ctttacaaga agtatctatt 2581 ggaaccgcaa aaatgcgccc tgaatggaat cgttggacac agttgtggaa tgccatgctc 2641 cattgcggaa gaggcttgtg atcaactgcc aatcgtgagt aggttctgtg gccaaaagca 2701 tgcggatctg tatgattcac ttctgaaacg ttctgaacag gagttacttc ttgaatttct 2761 ccagaagaag atgcaggagc tgaaactttc tcatatcgta aaaatggcta agcttgaaag 2821 tgaggttaac gcaatacgta agtccgtagc ttcttctttt gaagattctg ttggatgtga 2881 tgattcttct tccgtttcta agttgtaaaa aaaaaaaaaa aaaaaatgtt tgatcagatc 2941 attcaaatct gatggtgccc atcaaccata tgatgggagt gtttgcaagt ccactataat 3001 cgaacttgaa aacgatgcct gaattggaaa ccatgaatct taacggattc tggagagaaa 3061 atttaggaat tggtatgtaa gctacaactt ccggtagctg cgtcacactt taagagtgtg 3121 catactgagc cgaagctcag cttcggtccc ccaagggaag acca //