LOCUS X52774 3164 bp RNA linear VRL 23-OCT-2008 DEFINITION Barley stripe mosaic virus (BSMV) third genomic component RNA 3. ACCESSION X52774 VERSION X52774.1 KEYWORDS RNA 4; RNA3 component. SOURCE Barley stripe mosaic virus ORGANISM Barley stripe mosaic virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Virgaviridae; Hordeivirus. REFERENCE 1 (bases 1 to 3164) AUTHORS Kozlov,Yu.V., Afanas'ev,B.N., Rupasov,V.V., Golova,Yu.B., Kulaeva,O.I., Dolya,V.V., Atabekov,I.G. and Baev,A.A. TITLE Primary structure of barley stripe mosaic virus RNA 3 and its variability JOURNAL Mol. Biol. 23, 854-863 (1990) FEATURES Location/Qualifiers source 1..3164 /variety="RNA3 (II)" /mol_type="genomic RNA" /db_xref="taxon:12327" /organism="Barley stripe mosaic virus" repeat_region 85..447 /note="missing in variation RNA3 (III) and RNA4" CDS 94..2406 /db_xref="GOA:Q80873" /db_xref="InterPro:IPR001788" /db_xref="InterPro:IPR007094" /db_xref="UniProtKB/Swiss-Prot:Q80873" /codon_start=1 /protein_id="CAA36983.1" /translation="MDVVKKFAVMSVTVVAGPVLTLSSPVVVTFGTSLIAVSLVKRLL QEQPRVIAHDHEHYPGGSESSSSSCATAPILRNLSRDQCDSENIGCSSSACSPSEIVK VTRQVVEVERGLYRDIQFGMDVVKKFAVMSVTVVAGPVLTLSSPVVVTFGTSLIAVSL VKRLLQEQPRVIAHDHEHYPGGSESSSSSCATAPILRNLSRDQCDSENIGCSSSACSP SEIVKVTRQVVEVERGLYRDIFQDNEIPSVMEEKLQKLLYSEGEKIRRRCQFEASTMH SRKVKVPEVGTIPDIQTWFDATFLGNSVRFSDFDGYTVATKDINMDVQDCRLKFGKTF RPYEFKESLKPVLRTAMPEKRRGSLIDSVLAFRKRNLAAPRLQGALNEWHTIENVLKK ALKVFFFEDLIDRTDHCTYESALRWWDKQSVTARAQLVADQRRLCDVDFTTYNFMIKN DVKPKLDLTPQVEYAALQTVVYPDKIVNAFFGPIIKVINERIIRALRPHVVFNSRMTA DELNETVAFLTPHKYRALEIDFSKFDKSKTGLHIKAVIGLYKLFGLDGLLKVLWEKSQ YQTYVKDRNFGLEAYLLYQQKSGNCDTYGSNTWSAALALLDCLPLEDAHFCVFGGDDS LILFDQGYIISDPCRQLAGTWNLECKVFDFKYPAFCGKFLLCIDGKYQFVPDAAKFIT KLGRTDVRDVEVLSEIYISINDNYKSYKDFKVLDALDKALVNRYRSPYSAISALVSLC YHMFDFNKFKLLFNCEGKFVDKKLRKDFEW" /note="unnamed protein product; ORF 1" repeat_region 448..810 /note="missing in variation RNA3 (III) and RNA4" misc_feature 2044..2229 /note="deletion in variation RNA4" CDS 2449..2910 /db_xref="GOA:Q80874" /db_xref="InterPro:IPR007609" /db_xref="UniProtKB/Swiss-Prot:Q80874" /codon_start=1 /protein_id="CAA36984.1" /translation="MMATFSCVCCGTSTTSTYCGKRCERKHVYSETRNKRLELYKKYL LEPQKCALNEIVGHSCGMLCSIAEEACDQLPIVSRFCGQKHADLYDSLLKRSEQELLL EFLQKKMQELKLSHIVKMAKLESEVNAIRKSVASSFEDSVGCDDSSSVSKL" /note="unnamed protein product; ORF 2" ORIGIN 1 gnnngttata gcttgagcat taccgtcgtg taattgcaac acttggcttg ccaaataacg 61 ctaaagcgtt cacgaaacaa acaacaattc ggcatggatg ttgtgaagaa attcgccgtc 121 atgtcagtga ctgtagtagc aggtcccgtc cttacgcttt catcacctgt ggtggtgacg 181 tttggaacaa gcttaattgc cgtatctttg gtgaaacggt tgctacagga acaaccccga 241 gtaattgctc acgatcacga acattaccca ggtggttctg agagcagttc tagctcttgt 301 gctaccgcgc ctattttacg taatctttcg cgagatcagt gcgattcaga gaatattgga 361 tgcagttcta gcgcctgttc tccgtctgaa attgtgaaag ttacaaggca ggtagtggaa 421 gttgaacgtg gtctttaccg ggacattcaa ttcggcatgg atgttgtgaa gaaattcgcc 481 gtcatgtcag tgactgtagt agcaggtccc gtccttacgc tttcatcacc tgtggtggtg 541 acgtttggaa caagcttaat tgccgtatct ttggtgaaac ggttgctaca ggaacaaccc 601 cgagtaattg ctcacgatca cgaacattac ccaggtggtt ctgagagcag ttctagctct 661 tgtgctaccg cgcctatttt acgtaatctt tcgcgagatc agtgcgattc agagaatatt 721 ggatgcagtt ctagcgcctg ttctccgtct gaaattgtga aagttacaag gcaggtagtg 781 gaagttgaac gtggtcttta ccgggacatt tttcaggaca acgaaatccc atcagtcatg 841 gaagagaaac tgcagaaact cctttactct gagggtgaga agattcgaag acgttgccaa 901 tttgaagcat caacgatgca ctcacgcaaa gtaaaggttc cggaggtagg tactatccca 961 gatatccaaa cttggttcga tgctacgttt cttggtaact ccgttaggtt ttctgatttc 1021 gacggttata ctgttgctac gaaggacatt aacatggatg ttcaggattg tagacttaag 1081 ttcgggaaga cttttcgacc ttatgaattt aaggaatcac taaaaccagt actgaggaca 1141 gcaatgccag aaaagcgacg gggtagtttg attgatagtg tgctggcctt tcgtaaaaga 1201 aatttggctg cgcccagatt acaaggggct ttgaatgaat ggcacacaat tgagaatgtg 1261 ctgaagaagg cgttaaaggt attcttcttt gaagatttaa ttgatcgaac ggatcattgc 1321 acttacgagt cagcgctcag atggtgggat aaacaatcag tgacggctcg agcgcagctc 1381 gtggcggacc aacggaggtt atgtgatgtt gacttcacga cttataactt catgataaaa 1441 aatgatgtaa aaccgaagtt agatctaaca cctcaagttg aatatgcagc tttgcagact 1501 gttgtgtatc ctgataagat agtcaatgct ttctttggtc cgatcataaa ggtgattaat 1561 gaacggatca tcagagcgct tagacctcat gtggtcttta attctcgtat gactgctgat 1621 gaactgaatg aaacagttgc ctttttgaca cctcacaagt acagagcctt agagattgac 1681 ttttcaaaat ttgataaatc aaagactggg cttcatatca aagctgtcat tggactctat 1741 aagctctttg gtctagatgg cctgttaaaa gtactctggg aaaaatcgca atatcagact 1801 tacgtgaaag atagaaactt cggtctcgag gcatatctat tatatcagca aaagtcagga 1861 aattgtgaca cttacggttc gaacacctgg tctgccgcct tggcgttgtt agattgtctt 1921 cctttggaag atgcacattt ctgtgtattt ggtggtgatg attcattgat attgtttgat 1981 cagggataca taatttccga cccatgccgg caacttgccg gtacttggaa tcttgaatgt 2041 aaagtgttcg acttcaagta ccccgcattt tgtggtaaat ttctgctgtg catagatgga 2101 aaatatcagt ttgttccaga tgcggcaaaa tttatcacaa aattaggtag aactgatgtg 2161 agagatgtag aagttttgag tgagatttat atctctatca atgacaatta caaatcttac 2221 aaagacttta aggtgcttga tgctttggat aaggctttag tgaacagata tcgatcccct 2281 tatagtgcta tttctgcttt ggtttcttta tgttatcata tgtttgactt taataagttt 2341 aagttgctgt ttaattgtga agggaaattt gtggataaga agctgagaaa ggacttcgag 2401 tggtgaactc tgggtcctga tgtttaaatc tactgtattt accttcgcat gatggctact 2461 ttctcttgtg tgtgttgtgg tacctcaact acaagtactt actgtggtaa gagatgtgag 2521 cgaaagcatg tatattctga aacaagaaat aagagattgg aactttacaa gaagtatcta 2581 ttggaaccgc aaaaatgcgc cctgaatgaa atcgttggac acagttgtgg aatgctatgc 2641 tccattgcgg aagaggcttg tgatcaactg ccaatcgtga gtaggttctg tggccaaaag 2701 catgcggatc tgtatgattc acttctgaaa cgttctgaac aggagttact tcttgaattt 2761 ctccagaaga agatgcagga gctgaaactt tctcatatcg taaaaatggc taagcttgaa 2821 agtgaggtta acgcgatacg taagtccgta gcttcttctt tcgaagattc tgttggatgt 2881 gatgattctt cttccgtttc taagttgtaa aaaaaaaaaa aaaaaaaatg tttgatcaga 2941 tcattcaaat ctgatggtgc ccatcaacca tatgatggga gtgtttgcaa gtccactata 3001 atcgaacttg aaaacgatgc ctgaattgga aaccatgaat cttaacggat tctggagaga 3061 aaatttagga ttggtatgaa gctacaactt ccggtagctg cgtcacactt taagagtgtg 3121 catactgatc cgaagctcag cttcggtccc ccaagggaag acca //