LOCUS KF523378 5685 bp RNA linear VRL 22-OCT-2013 DEFINITION Barley yellow dwarf virus-GAV isolate AK2, complete genome. ACCESSION KF523378 VERSION KF523378.1 KEYWORDS . SOURCE Barley yellow dwarf virus-GAV ORGANISM Barley yellow dwarf virus-GAV Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae; Luteovirus; unclassified Luteovirus. REFERENCE 1 (bases 1 to 5685) AUTHORS Song,S., Tao,Y. and Wu,Y. TITLE Genetic characterization of the complete genome of Barley yellow dwarf virus-GAV in Northwestern China JOURNAL Unpublished REFERENCE 2 (bases 1 to 5685) AUTHORS Song,S., Tao,Y. and Wu,Y. TITLE Direct Submission JOURNAL Submitted (09-AUG-2013) State Key Laboratory of Crop Stress Biology for Arid Areas, College of Plant Protection, Northwest A&F University, Taicheng Road 3#, Yangling, Xianyang, Shaanxi 712100, China FEATURES Location/Qualifiers source 1..5685 /mol_type="genomic RNA" /country="China: Ankang" /collection_date="30-Apr-2013" /host="wheat" /db_xref="taxon:224578" /isolate="AK2" /serotype="GAV" /organism="Barley yellow dwarf virus-GAV" CDS join(142..1158,1158..2744) /ribosomal_slippage /codon_start=1 /protein_id="AGX32104.1" /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFK AHDAFVNMCFGHMADIEDFEAELAEEFVEREDEVEEARSLLKLLVAQKTKSGVTEAWN DFFLKSRGGVYAPLSCEPTKQELEAKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFIN CWNDLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQNLYSFTEVKKVETGLTKE VVKEKNGEETKHLEPILEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATI ARYVENVGDKFKLDIASKTYLKQCATMSVPIPTTRDIKMKMVLQSPEARARRERMDVL DSVGFLEGLCTASGFESPFPILGLPEIAVTDGARLRKVSSSIRYLSQTHLGLVYKAPN ASLHNALVAVERRVFTVGKGDKPIYPPRPEHDIFTETMDYFGKSIIDEVGYCKTYPAQ LLANSYSAGKRAMYHKAIASLKTTPYQQRDANVQAFLKKEKHWMTKDIAPRLICPRSK RYNIILGTRLKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFACPVAIGV DASRFDQHVSEQALKWEHGIYNGIFGDSELALALEHQISNNIKMFVEDKMLRFKVRGH RMSGDINTSMGNKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKLFDGMYDH FLQYGFNMVTEKPVHELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSD VKSYMSAVAQCGLVLNAGVPILESFYKCLYRSSGYKKVSDEFIKNVISYGTDERLQGR RTFEDTPITNHSRMSYWESFGVDPKIQQIVERYYDNLTVSAQLQSVKVTTPHLQSILL SIPENHSQNDY" /product="ORF2" /note="P1-P2 fusion created by -1 ribosomal frameshift" CDS 142..1161 /codon_start=1 /protein_id="AGX32109.1" /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFK AHDAFVNMCFGHMADIEDFEAELAEEFVEREDEVEEARSLLKLLVAQKTKSGVTEAWN DFFLKSRGGVYAPLSCEPTKQELEAKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFIN CWNDLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQNLYSFTEVKKVETGLTKE VVKEKNGEETKHLEPILEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATI ARYVENVGDKFKLDIASKTYLKQCATMSVPIPTTRDIKMKMVLQSPEARARRERMDVL DSVGF" /product="ORF1" CDS 2858..4834 /codon_start=1 /protein_id="AGX32105.1" /translation="MNSVGRRNNRRRNGPRRARRAGAVRRMVVVQPNRAGPKRRTRRR TRGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHRYK ITNVKVEFKSHASASTVGAMFIELDTSCTQSTLGSYINSFTISKSATKNFTAQQIDGK EFRESTVNQFYMLYKANGSTSDTAGQFIITIRVANMTPKXVDSSTSEPTPQPQPEPKP DPQPTPEPQHKRFFEYVGTPYVIIQTRESSDSIAVKSMNDQSFQYIENETSEQRTVQA WWTSNNGVQAQAAFVFPIPAGEYSVNISCEGLQSVDHIGGNRDGYWIGLIAYQNQSGD YWGVGNYAGCDITNLLGTNTWRPGHEDLELNGCKFTNGQIVERDAVISFHVKAQGADP KFYLMAPKTMKSDKYNYVVSYGGYTDKRMEFGSISVTVDESDVEAQRYNRHTSTVRKT ENRDYGWMSVLPPYDPDQVPEQEEEQPMVDKEMDSISPVEPPSPTSDTEAERAFDLRE EELTRARLEYEAATESIPDAAPDILPSKSEMSSRPIDHDGRSLPKPQSKEVLGTYQGQ NITPDDVPPVIAEKLREVNRAPSTLLYDRQPKTPKSFLSRFLETNKTSLASPGSQSST SGMTREQASEYTRIRKSMGLTAAKEYKASLADTW" /product="aphid transmission protein" /transl_except=(pos:3455..3457,aa:OTHER) /note="P3-P5 fusion created by read-through of the ORF3 stop codon" CDS 2858..3457 /codon_start=1 /protein_id="AGX32106.1" /translation="MNSVGRRNNRRRNGPRRARRAGAVRRMVVVQPNRAGPKRRTRRR TRGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHRYK ITNVKVEFKSHASASTVGAMFIELDTSCTQSTLGSYINSFTISKSATKNFTAQQIDGK EFRESTVNQFYMLYKANGSTSDTAGQFIITIRVANMTPK" /product="coat protein" /note="ORF3" CDS 2895..3359 /codon_start=1 /protein_id="AGX32107.1" /translation="MAQGEQGALAQFGEWLWSNPIEPDQNEELVDAQEEEGQILYLDQ QAGLRYSYSQSTTLRPTPQGQSSSVPTFRNAQRFQVEYSSPTTVTRSQTSRLSLSHTR PPLQSAQCLLNSTLRAHNQPWVATLTHSPSQNQQPKTSPPNRLTGKNSGRAR" /product="movement protein" /note="ORF4" CDS 4941..5072 /codon_start=1 /protein_id="AGX32108.1" /translation="MDDLHVIAVCVLSTTVFAAAVLTISAIASICGSACATANIQRV" /product="ORF6" ORIGIN 1 tagtgaagat tgaccatctc acaaaagttg ttacgtgctt gtaacacact acacactcgt 61 tttgtaatcg agaagtagtt gcaaaacggt cctctcatag cctgactagc tgagagccat 121 ccttctatcc ccaccgccac catgttcttt gaaattctta taggagctag tgccaaggcg 181 gtcaaagatt tcatcagcca ctgctattct aggctaaaat ctatatatta ttctttcaaa 241 cgatggctga tggaaatatc tgggcaattt aaggcccatg acgcctttgt caacatgtgc 301 tttgggcaca tggctgacat tgaagacttc gaggctgaac tcgctgaaga gttcgtcgag 361 agggaggatg aggtggaaga ggccaggagc ctcttgaaac tgctggtcgc ccaaaaaact 421 aaatccgggg tgaccgaggc ttggaacgac ttctttttga agtcgagggg tggtgtttac 481 gcaccgcttt cttgtgagcc taccaagcag gaactagaag ccaagagcga aaagctcgag 541 aggcttctag acgaacagca ccaattcgag gtgcgagcgg ccaagaaata catcaaagaa 601 aagggccgcg gcttcatcaa ctgctggaac gacttgcgta gtcgtctcag attggtgaag 661 gacgtcaagg acgaggcgaa ggataacgcc agagccgctg ccaagattgg agcggaaatg 721 ttcgcccccg ttgacgtaca gaacctctac agctttacag aggtcaagaa agtggagacc 781 ggcctcacaa aggaggtcgt aaaagaaaag aacggcgaag aaacgaagca cctcgaaccc 841 atcttggaag aggtgcggtc tatcaaggac accgccgaag ctagggacgc cgcctccact 901 tggataacag agacagtcaa attgaaaaac tcaaccctca atgctgatga actgtctctc 961 gccaccatcg cccgctacgt tgaaaatgta ggggacaaat tcaaactcga cattgctagc 1021 aagacatatc taaagcaatg cgcgacgatg tctgtaccaa ttccaaccac cagggacatc 1081 aaaatgaaga tggtgctgca gagccctgaa gcacgtgcca ggcgggaacg catggacgtg 1141 cttgactctg tgggttttta gaggggctct gtaccgcctc tggttttgag agcccatttc 1201 caattctcgg gctgccagag attgcggtca cagacggagc ccggctccgt aaggttagta 1261 gtagtattag ataccttagc caaacccacc taggcttagt atataaggca ccaaatgcct 1321 ccctgcacaa cgcgcttgtc gcagtggaga gaagagtttt tacagtagga aagggggaca 1381 aacccattta ccccccccgc cctgagcacg acattttcac tgaaacgatg gactactttg 1441 gtaagtccat aatcgacgag gtgggatact gtaaaacata cccagcgcag ctcctggcta 1501 acagttacag tgcaggaaaa agggccatgt accacaaggc cattgcatcc ctgaaaacaa 1561 ccccctatca acagagggat gctaatgtgc aagctttcct gaagaaggaa aaacattgga 1621 tgaccaagga catcgctccc cgattgatat gcccccgcag caagcggtac aacattatcc 1681 taggaactcg tttgaaattc aacgagaaga agatcatgca cgccatcgat agtgtgtttg 1741 gatcccccac tgtgctttct ggttatgaca acttcaaaca aggaaggatc atagccaaga 1801 agtggcaaaa gtttgcatgc cccgtcgcca tcggcgtgga tgctagccgc tttgaccaac 1861 acgtgtcaga gcaggcgctt aagtgggaac acgggatata caatggaatc ttcggtgata 1921 gcgagttggc ccttgcactt gaacaccaaa tatccaacaa catcaagatg ttcgtagagg 1981 ataagatgct taggttcaag gtgagaggcc acagaatgtc cggtgacatt aataccagca 2041 tgggaaataa gctgataatg tgcggtatga tgcacgcata tttcaagaag ctgggtgttg 2101 aagctgaact atgcaacaat ggagacgact gtgtcatcat cacagacaga gccaatgaga 2161 agctctttga tggcatgtac gaccactttc tccagtatgg tttcaacatg gtgaccgaaa 2221 aaccagttca cgaactggaa caattggagt tttgccagtc aaaaccggtc tctattaatg 2281 gaaaatacag aatggttaga aggcccgata gcataggcaa agacagcaca acactactga 2341 gcatgctcaa ccagtccgac gtcaaaagtt acatgtcggc tgtggctcag tgtggtttgg 2401 tgctaaacgc tggagtaccc attctcgaaa gtttctataa atgcctatat agaagctctg 2461 ggtacaagaa agtgagtgat gaattcatca aaaacgttat ttcgtatgga acagatgaga 2521 gactacaagg tagacgtacc tttgaagaca cgcctatcac caatcatagt aggatgtcct 2581 actgggaatc attcggagtt gaccctaaga tacaacaaat tgtcgagcgg tactacgaca 2641 atcttacggt aagtgcccaa ctccagagcg tgaaggtgac tactccacat ctgcaatcaa 2701 tactactttc cataccggaa aaccactcac aaaacgacta ttaattacca aatcttagct 2761 gggtttggaa tagggtttat agtttctatt ccctgtacat tagctctctc ctactttatc 2821 tacaataaag tttctgacac cactagggag gtggtgaatg aattcagtag gccgtagaaa 2881 caaccgcagg agaaatggcc caaggagagc aaggcgcgct ggcgcagttc ggagaatggt 2941 tgtggtccaa cccaatcgag ccggaccaaa acgaagaact cgtcgacgca caagaggagg 3001 aggggcaaat cttatatctg gaccagcagg caggactgag gtattcgtat tctcagtcaa 3061 cgaccttaag gccaactcct cagggacaat caagttcggt cccgaccttt cgcaatgccc 3121 agcgctttca ggtggaatac tcaagtccta ccaccgttac aagatcacaa acgtcaaggt 3181 tgagtttaag tcacacgcgt ccgcctctac agtcggcgca atgtttattg aactcgacac 3241 ttcgtgcaca caatcaacct tgggtagcta cattaactca ttcaccatct caaaatcagc 3301 aaccaaaaac ttcaccgccc aacagattga cgggaaagaa ttcagggaga gcacggtgaa 3361 ccaattttat atgctataca aggcaaatgg tagtacatct gataccgccg ggcaattcat 3421 cattacaata cgcgttgcca acatgactcc caaataggta gactcctcaa catcagagcc 3481 tacaccccaa ccccaaccag agcccaaacc tgatccgcag ccaacaccag agcctcaaca 3541 caaacggttt ttcgagtacg taggaacgcc ctatgttatc atacaaacta gggagagttc 3601 ggatagcatt gccgtcaagt caatgaatga tcaatccttt cagtacatcg aaaacgaaac 3661 ttctgagcaa agaaccgttc aggcatggtg gacctccaac aacggcgtcc aagcgcaagc 3721 agcatttgta tttcctatac ccgctggaga gtatagtgtt aatatttctt gtgaaggtct 3781 acaatcagtg gaccacattg gaggaaaccg agacggatat tggataggct taatagccta 3841 ccaaaatcaa agcggggatt attggggcgt gggcaactat gctggctgtg atataaccaa 3901 tcttctagga acaaatactt ggcgtccagg ccatgaagat ttggaattaa acggctgcaa 3961 attcactaat ggacagatag ttgaaagaga cgctgtgata tccttccatg ttaaagctca 4021 gggtgctgac cccaagtttt acctcatggc acccaagacc atgaagtccg acaagtacaa 4081 ctatgtcgtg tcttatggag gttacacaga caaaagaatg gaatttggat ccatatctgt 4141 cactgtggat gaatctgatg ttgaggcaca gcgctacaac aggcacacta gcacggttag 4201 gaaaacagaa aaccgagatt atgggtggat gagtgttcta ccaccctatg atcctgacca 4261 agtgccggag caagaggagg aacaaccaat ggtcgacaag gagatggatt caatatctcc 4321 tgtcgaaccc ccttccccaa cctccgacac tgaggctgaa agagcctttg acttgagaga 4381 ggaagaactt acgagggcca gacttgaata cgaggcagcc actgaatcca tacctgatgc 4441 tgccccggac attttaccct caaaatctga aatgagcagt agaccaatag accatgatgg 4501 aaggtcttta ccaaaacctc agtcaaaaga agtcctcggc acttaccaag gccagaacat 4561 cacaccagat gatgttcctc ctgtcatagc tgaaaaattg cgtgaagtga acagagcacc 4621 atctactctg ctttacgaca ggcagccaaa aacaccaaaa agctttcttt cccgtttctt 4681 agaaaccaat aaaactagct tggcttcccc tggttcacag tcttccacgt caggaatgac 4741 aagagaacaa gcctcagaat acaccaggat taggaagtca atgggcctca cggcagctaa 4801 ggagtacaaa gccagtttag ctgacacatg gtgaagatca acaccactcg caaattcgga 4861 tcctgggaaa caggcagaac ttcggttcgt aagctcgggt aaactagtcc tttaccgtcg 4921 tatcgtactt tgtgtggccg atggatgatc tacatgtgat agcagtctgt gtgctgtcca 4981 cgacagtgtt cgcagcggca gtactcacaa ttagcgcaat tgctagtatt tgcggcagtg 5041 catgtgcaac tgccaacatt caaagggttt aatctgtgat acaacccacc aaaaatacac 5101 ggggaacaac aggttcagcg agggggctaa cgacccccag caattggctg gttctgggag 5161 acttaaataa cctcctatag aacgaagtgg aatcccccca ctgatcaaat tgggaagcat 5221 gcttctgtgc tatacactgc cccagaggac actgggtaaa caaatctaac cacccaactc 5281 aatgaaatga gagcggaggt ggcggggtgg gtgacctcgt gatgtgcacc cgatcgtcag 5341 gattgaagac gttaaaactc agcgacctag tgcaagtcgt taaactgact cgggtggata 5401 caccacaccc ggcccaactt ggaggcatac ccacgatacg aaacgtgggt ttcttggagc 5461 cactacctgt gatgcaaggt agggtatggg tcttagcaag ccctgcgcca ggaaatggac 5521 ataaaccata gcaatccccc aagtcatctc ggcaaaccac aggtgaaccg tgccacaggc 5581 ctgactaccg aaaggaaaat cagtatccaa cacagcaatg tgttgggggt cacacccttc 5641 ggggtactct taacgctgac actcgaaaga gcagttcggc aaccc //