LOCUS KF523381 5686 bp RNA linear VRL 22-OCT-2013 DEFINITION Barley yellow dwarf virus-GAV isolate FF1, complete genome. ACCESSION KF523381 VERSION KF523381.1 KEYWORDS . SOURCE Barley yellow dwarf virus-GAV ORGANISM Barley yellow dwarf virus-GAV Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae; Luteovirus; unclassified Luteovirus. REFERENCE 1 (bases 1 to 5686) AUTHORS Song,S., Tao,Y. and Wu,Y. TITLE Genetic characterization of the complete genome of Barley yellow dwarf virus-GAV in Northwestern China JOURNAL Unpublished REFERENCE 2 (bases 1 to 5686) AUTHORS Song,S., Tao,Y. and Wu,Y. TITLE Direct Submission JOURNAL Submitted (09-AUG-2013) State Key Laboratory of Crop Stress Biology for Arid Areas, College of Plant Protection, Northwest A&F University, Taicheng Road 3#, Yangling, Xianyang, Shaanxi 712100, China FEATURES Location/Qualifiers source 1..5686 /mol_type="genomic RNA" /country="China: Fengfu" /collection_date="25-May-2013" /host="wheat" /db_xref="taxon:224578" /isolate="FF1" /serotype="GAV" /organism="Barley yellow dwarf virus-GAV" CDS join(143..1159,1159..2745) /ribosomal_slippage /codon_start=1 /protein_id="AGX32123.1" /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFK AHDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWN DFFLKSRGGVYAPLSCEPTKQELEVKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFIN CWNDLRSRLRLVKDVKDEAKDNAKAAAKIGAEMFAPVDVQDPYSFTEVKKVETGLTKE VVKEVNGEETKRLEPILEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATI ARYVENVGDKFKLDIASKSYLKQCATMSVPIPTTKDIKMKMVLQSPEARARRERMDVL DSVGFLEGLCTASGFESPFPILGLPEIAVTDGARLRKVSSNIRYLSQTHLGLVYKAPN ASLHNALVAVERRVFTVGKGDKPIYPPRPEHDIFTDTMDYFGKSIIDEVGYCKTYPAQ LLANSYSAGKRAMYHKAIASLKTTPYQQRDANVQAFLKKEKHWMTKDIAPRLICPRSK RYNIILGTRLKFNEKKIMHAIDSVFGSPTVLSGYDNFEQGRIIAKEWQKFASPVAIGV DASRFDQHVSEQALKWEHGIYNGIFGDSELALALEHQISNNIKMFVEDKMLRFKVRGH RMSGDINTSMGNKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKLFDGMYDH FLQYGFNMVTEKPVYELEQLEFCQSKPVSINGKYRRVRRPDSIGKDSTTLLSMLNQSD VKCYMSAVAQCGLVLNAGVPILESFYKCLYRSSGYKKVSDEFIKNVISYGTDERLQGR RTFEDTPITNHSRMSYWESFGVDPKIQQIVERYYDNLTVSAQLQSVKVTTPHLQSILL SIPENHSQNDY" /product="ORF2" /note="P1-P2 fusion created by -1 ribosomal frameshift" CDS 143..1162 /codon_start=1 /protein_id="AGX32122.1" /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFK AHDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWN DFFLKSRGGVYAPLSCEPTKQELEVKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFIN CWNDLRSRLRLVKDVKDEAKDNAKAAAKIGAEMFAPVDVQDPYSFTEVKKVETGLTKE VVKEVNGEETKRLEPILEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATI ARYVENVGDKFKLDIASKSYLKQCATMSVPIPTTKDIKMKMVLQSPEARARRERMDVL DSVGF" /product="ORF1" CDS 2859..4835 /codon_start=1 /protein_id="AGX32124.1" /translation="MNSVGRRNNRRRNGPRRARRVGAVRRMVVVQPNRAGPKRRTRRR TRGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHRYK ITNVKVEFRSHASASTVGAMFIELDTSCSQSTLGSYINSFTLSKSATKNFTAQQIDGK EFRESSVNQFYMLYKANGSTSDTAGQFIITIRVANMTPKXVDSSTPEPTPQPQPEPKP DPQPTPEPQHKRFFEYVGTPYVIIQTRESSDSIAVKSMNDQSFQYIENETSEQRTVQA WWTSNNGVQAQAAFVFPIPAGEYSVNISCEGLQSVDHIGGNRDGYWIGLIAYQNQSGD YWGVGNYAGCDITNLLGTNTWRPGHEDLELNGCKFTNGQIVERDAVISFHVKAQGADP KFYLMAPKTMKSDKYNYVVSYGGYTDKRMEFGSISVTVDESDVEAQRYNRHTSTVRKT ENRDYGWMSVLPPYDPNQVPEQEEEQPMVDKEMYSRSPVEPPSPTSDTEAERAFDMRE EELTRARLEYEAATESIPDAAPDILPSKSEMSSRPIDHDGRSLPKPQSKEVLGTYQGQ NITPDDVPPVIAEKLREVNRAPSTLLYDRQPKTPKSFLSRFVETNKTSLASPGSQSST SGMTREQASEYTRIRKSMGLTAAKEYKASLADTW" /product="aphid transmission protein" /transl_except=(pos:3456..3458,aa:OTHER) /note="P3-P5 fusion created by read-through of the ORF3 stop codon" CDS 2859..3458 /codon_start=1 /protein_id="AGX32125.1" /translation="MNSVGRRNNRRRNGPRRARRVGAVRRMVVVQPNRAGPKRRTRRR TRGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHRYK ITNVKVEFRSHASASTVGAMFIELDTSCSQSTLGSYINSFTLSKSATKNFTAQQIDGK EFRESSVNQFYMLYKANGSTSDTAGQFIITIRVANMTPK" /product="coat protein" /note="ORF3" CDS 2896..3360 /codon_start=1 /protein_id="AGX32126.1" /translation="MAQGEQGALAQFGEWLWSNPIEPDQNEELVVAQEEEGQILYLDQ QAGLRYSYSQSTTLRPTPQGQSSSVPTFRNAQRFQVEYSSPTTVTRSQTSRLSLGHTR PPLQSAQCLLNSTLRAHNQPWVATLTHSPSQNQQPKTSPPNRLTGRNSGRAR" /product="movement protein" /note="ORF4" CDS 4942..5073 /codon_start=1 /protein_id="AGX32127.1" /translation="MDDLHVIAVCVLSTTVFAAAVLTISAIASICGSACATANIQRV" /product="ORF6" ORIGIN 1 tagtgaagat tgaccatctc acaaaagctg ttacgtgctt gtaacacact acacactcgt 61 tttgtaatcg agaagtagtt gcaagaacgg tcctctcatt gcctgactag ctgagagcca 121 tccttctatc cccaccgcca ccatgttctt tgaaatactt ataggagcta gtgccaaggc 181 ggtcaaagat ttcatcagcc actgctactc tagactgaaa tccatatatt attctttcaa 241 acgatggctg atggaaatat ctgggcaatt taaggcccat gacgcctttg tcaacatgtg 301 ctttgggcac atggctgaca ttgaagactt cgaggctgaa ctcgctgaag agttcgccga 361 gagggaggat gaggtggaag aggccaggag cctcttgaaa ctgctggtcg cccaaaaatc 421 taaatccggg gtgaccgagg cttggaatga cttctttttg aagtcgaggg gtggtgttta 481 cgcaccgctc tcttgtgagc caaccaagca ggaactagaa gtcaagagcg agaagctcga 541 gaggcttcta gacgaacagc accaattcga ggtgcgagcg gccaagaaat acatcaaaga 601 aaagggccgc ggcttcatca actgctggaa cgacttgcgt agccgtctca gattggtgaa 661 ggatgtcaag gatgaggcga aggacaacgc caaagccgct gcaaagattg gagcggaaat 721 gttcgccccc gttgacgtgc aggaccccta cagctttaca gaggtcaaga aggtggagac 781 cggcctcaca aaggaggtcg taaaagaagt gaacggtgaa gaaacgaagc gcctcgaacc 841 catcttggaa gaggtgcgat ccatcaagga caccgccgaa gctagggacg ccgcctccac 901 ttggataaca gagacagtca aattgaaaaa ttcaaccctt aacgctgatg aactgtctct 961 cgccaccatc gcccgctacg ttgaaaacgt aggggacaaa ttcaaactcg acattgccag 1021 caagtcatat ctaaagcaat gcgcaacgat gtctgtacca attccaacca ccaaggacat 1081 caaaatgaag atggtgttgc agagtcctga agcacgtgcc aggcgggaac gcatggacgt 1141 gcttgactct gtgggttttt agaggggctc tgtaccgcct ctggttttga gagcccattt 1201 ccaattctcg ggctgccaga gattgcggtc acagacggag cccggctccg taaggttagt 1261 agcaatatta gataccttag ccaaacccac ttaggtttag tatataaggc accaaatgcc 1321 tccctgcaca acgcgcttgt ggcagtggag agaagagttt ttacagtagg aaagggggac 1381 aaacctattt accccccccg ccctgagcac gacattttca ctgatacaat ggactacttt 1441 ggtaagtcca taatcgacga ggtgggatac tgtaaaacat acccagcgca actcctggct 1501 aacagctata gcgcaggaaa aagggccatg taccacaaag ccattgcatc cctgaaaaca 1561 accccctatc agcagagaga tgctaatgtg caagccttcc tcaagaagga aaaacattgg 1621 atgaccaagg acatcgctcc ccgattgata tgcccccgca gcaagcggta caacattatc 1681 ctaggaactc gtttgaaatt caacgagaag aagatcatgc acgccatcga tagtgtgttt 1741 ggatccccca ctgtgctctc tggttatgac aacttcgagc aaggaagaat catagccaag 1801 gagtggcaaa agtttgcaag ccccgtcgct atcggcgtgg atgctagccg ctttgaccaa 1861 cacgtgtcag agcaggcgct taagtgggaa cacgggatat acaatggaat cttcggtgat 1921 agcgaattgg ctcttgcact tgaacaccaa atatccaaca acatcaaaat gttcgtagag 1981 gacaaaatgc ttaggttcaa ggttagaggc catagaatgt ccggtgacat taataccagc 2041 atgggaaaca agctaataat gtgcggcatg atgcacgcat atttcaagaa gctgggtgtt 2101 gaagcagaac tatgcaacaa tggagacgac tgtgtcatca tcacggacag agccaatgag 2161 aagctctttg atggcatgta cgatcacttt ctccagtatg gtttcaacat ggtgaccgaa 2221 aaaccagttt acgaactgga acaattggag ttttgccagt caaaaccggt ctctattaat 2281 ggaaaatata gaagggtcag aaggcccgat agcataggca aagacagcac aacactactg 2341 agcatgctca accaatccga cgtcaaatgc tacatgtcgg ctgtggctca gtgtggtttg 2401 gtgcttaacg ctggagtacc catactcgaa agtttctata aatgcctata tagaagctct 2461 gggtacaaga aagtgagtga tgaattcatc aaaaacgtca tttcgtatgg aacagatgag 2521 agactacaag gtagacgtac ctttgaagac acacctatca ctaatcatag taggatgtcc 2581 tactgggaat cattcggtgt tgaccctaag atacaacaaa ttgtcgagcg gtactacgac 2641 aatcttacgg taagtgccca actccagagc gtgaaggtga ctactccaca tctgcaatca 2701 atactactct ccataccgga aaaccactca caaaacgact attaattacc aaatcttagc 2761 tgggtttgga atagggttta tagtttctat tccctgtaca ttagctctct cctactttat 2821 ctacaataaa gtttctgaca ccactaggga ggtggtgaat gaattcagta ggccgtagaa 2881 ataaccgcag gagaaatggc ccaaggagag caaggcgcgt tggcgcagtt cggagaatgg 2941 ttgtggtcca acccaatcga gccggaccaa aacgaagaac tcgtcgtcgc acaagaggag 3001 gaggggcaaa tcttatatct ggaccagcag gcaggactga ggtattcgta ttctcagtca 3061 acgaccttaa ggccaactcc tcagggacaa tcaagttcgg tcccgacctt tcgcaatgcc 3121 cagcgctttc aggtggaata ctcaagtcct accaccgtta caagatcaca aacgtcaagg 3181 ttgagtttag gtcacacgcg tccgcctcta cagtcggcgc aatgtttatt gaactcgaca 3241 cttcgtgctc acaatcaacc ttgggtagct acattaactc attcaccctc tcaaaatcag 3301 caaccaaaaa cttcaccgcc caacagattg acgggaagga attcagggag agctcggtga 3361 atcaatttta tatgctatac aaggcaaatg gtagtacatc tgataccgcc gggcaattca 3421 tcatcacaat acgcgttgcc aacatgactc ccaaataggt agactcctca acaccagagc 3481 ctacacccca accccaacca gagcccaaac ctgatccgca gccaacacca gagcctcaac 3541 acaaacggtt tttcgagtac gtaggaacgc cctatgttat catacaaact agggagagtt 3601 cggatagcat tgccgtcaag tcaatgaatg atcaatcctt tcagtacatc gaaaacgaaa 3661 cttctgagca aagaaccgtt caggcatggt ggacctccaa caacggcgtc caagcgcagg 3721 cagcatttgt atttcctata cccgctggag agtatagcgt taatatatct tgtgaaggtc 3781 tacaatcagt ggaccacatt ggaggaaacc gagacggata ttggataggc ttaatagcct 3841 accaaaatca aagcggggat tattggggcg tgggcaacta tgctggctgt gatataacca 3901 atcttctagg aacaaacact tggcgtccag gccatgaaga tttggaattg aacggctgca 3961 aattcactaa tggacagata gttgaaagag acgctgtgat atccttccat gttaaagctc 4021 agggtgctga ccccaagttt tacctcatgg cacccaagac catgaagtct gacaagtaca 4081 actatgtcgt gtcttatgga ggttacacag acaaaagaat ggaatttgga tccatatctg 4141 tcactgtgga tgaatctgat gttgaggcac agcgctacaa caggcacact agcacggtta 4201 ggaaaacaga aaaccgagat tatgggtgga tgagtgttct accaccctat gatcctaacc 4261 aagtgccgga gcaagaggaa gaacaaccaa tggtcgacaa ggagatgtat tcaagatctc 4321 ctgtcgaacc cccttccccg acctccgaca ctgaggctga aagagccttt gacatgagag 4381 aggaagaact tacgagggcc agacttgaat acgaggcagc cactgaatcc atacctgatg 4441 ctgccccgga cattttaccc tccaaatctg aaatgagcag tagaccaata gaccatgatg 4501 gaaggtcttt accaaaacct cagtcaaaag aagtcctcgg cacttaccaa ggccagaaca 4561 tcacaccaga tgatgttcct cctgtcatag ctgaaaaatt gcgtgaagtg aacagagcac 4621 catctactct gctttacgac aggcagccaa aaacaccaaa aagctttctt tcccgtttcg 4681 tagaaaccaa taaaactagc ttggcttccc ctggttcaca gtcttccacg tcaggaatga 4741 caagagaaca agcctcagaa tacaccagga ttaggaagtc aatgggcctt acggcagcta 4801 aggagtacaa agccagttta gctgacacat ggtgaagatc aacaccactc gcaaattcgg 4861 atcctgggaa acaggcagaa cttcggttcg taagctcggg taaactagtc ctttaccgtc 4921 gtatcgtact ttgtgtggcc gatggatgat ctacatgtga tagcagtctg tgtgctgtcc 4981 acgacagtgt tcgcagcggc agtactcaca attagcgcaa ttgctagtat ttgcggcagt 5041 gcatgtgcaa ctgccaacat tcaaagggtt taatctgtga tacaacccac caaaaataca 5101 cggggaacaa caggttcagc gagggggcta acgaccccca gcaattggct ggttctggga 5161 gacttaaata acctcctata gaacgaagtg gaatcccccc actgatcaaa ttgggaagca 5221 tgcttctgtg ctatacactg ccccagagga cactgggtaa acaaatctaa ccacccaact 5281 caatgaaatg agagcggagg tggcggggtg ggtgacctcg tgatgtgcac ccgatcgtca 5341 ggattgaaga cgttaaaact caacgaccta gtgcaagtcg ttaaactgac tcgggtggat 5401 acaccacacc cggccaaact tggaggcata cccacgatac gaaacgtggg tttcttggag 5461 ccactacctg tgatgcaagg tagggtatgg gtcttagcaa gccctgcgcc aggaaatgga 5521 cataaaccat agcaatcccc caagtcatct cggcaaacca caggtgaacc gtgccacagg 5581 cctgactacc gaaaggaaaa tcagtatcca acacagcaat gtgttggggg tcacaccctt 5641 cggggtactc ttaacgctga cactcgaaag agcagttcgg caaccc //