LOCUS KF523382 5686 bp RNA linear VRL 22-OCT-2013 DEFINITION Barley yellow dwarf virus-GAV isolate TS1, complete genome. ACCESSION KF523382 VERSION KF523382.1 KEYWORDS . SOURCE Barley yellow dwarf virus-GAV ORGANISM Barley yellow dwarf virus-GAV Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae; Luteovirus; unclassified Luteovirus. REFERENCE 1 (bases 1 to 5686) AUTHORS Song,S., Tao,Y. and Wu,Y. TITLE Genetic characterization of the complete genome of Barley yellow dwarf virus-GAV in Northwestern China JOURNAL Unpublished REFERENCE 2 (bases 1 to 5686) AUTHORS Song,S., Tao,Y. and Wu,Y. TITLE Direct Submission JOURNAL Submitted (09-AUG-2013) State Key Laboratory of Crop Stress Biology for Arid Areas, College of Plant Protection, Northwest A&F University, Taicheng Road 3#, Yangling, Xianyang, Shaanxi 712100, China FEATURES Location/Qualifiers source 1..5686 /mol_type="genomic RNA" /country="China: Tianshui" /collection_date="02-Jun-2013" /host="wheat" /db_xref="taxon:224578" /isolate="TS1" /serotype="GAV" /organism="Barley yellow dwarf virus-GAV" CDS join(143..1159,1159..2745) /ribosomal_slippage /codon_start=1 /protein_id="AGX32129.1" /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFK AHDAFVNMCFGHMADIEDFEAELAEEFVEREDEVEEARSLLKLLVAQKTKSGVTEAWN DFFLKSRGGVYAPLSCEPTKQELEAKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFIN CWNDLRSRLRLVKDVKDEAKDNAKVAAKIGAEMFAPVDVQNLYSFTEVKKVETGLTKE VVKEENGEETKHLEPILEEVRSIKDIAEARDAASTWITETVKLKNSTLNADELSLATI ARYVENVGDKFKLDIASKTYLKQCATMSVPIPTTRDIKMKMVLQSPEARARRERMDVL DSVGFLEGLCTASGFESPFPILGLPEIAVTDGARLRKVSSSIRYLSQTHLGLVYKAPN ASLHNALVAVERRVFTVGKGDEPIYPPRPEHDIFTETMDYFGKSIIDEVGYCKTYPAQ LLANSYSAGKRAMYHKAIASLKTIPYQQRDANVQAFLKKEKHWMTKDIAPRLICPRSK RYNIILGTRLKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKEWQKFACPVAIGV DASRFDQHVSEQALKWEHGIYNGIFGDSELALALEHQISNNIKMFVEDKMLRFKVRGH RMSGDINTSMGNKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKLFDGMYDH FLQYGFNMVTEKPVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSD VKSYMSAVAQCGLVLNAGVPILESFYKCLYRSSGYKKVSDEFIKNVISYGTDERLQGR RTFEDTPITNHSRMSYWVSFGVDPKIQQIVERYYDNLTVSAQLQSVKVTTPHLQSILL SIPENHPQNDY" /product="ORF2" /note="P1-P2 fusion created by -1 ribosomal frameshift" CDS 143..1162 /codon_start=1 /protein_id="AGX32128.1" /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFK AHDAFVNMCFGHMADIEDFEAELAEEFVEREDEVEEARSLLKLLVAQKTKSGVTEAWN DFFLKSRGGVYAPLSCEPTKQELEAKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFIN CWNDLRSRLRLVKDVKDEAKDNAKVAAKIGAEMFAPVDVQNLYSFTEVKKVETGLTKE VVKEENGEETKHLEPILEEVRSIKDIAEARDAASTWITETVKLKNSTLNADELSLATI ARYVENVGDKFKLDIASKTYLKQCATMSVPIPTTRDIKMKMVLQSPEARARRERMDVL DSVGF" /product="ORF1" CDS 2859..4835 /codon_start=1 /protein_id="AGX32130.1" /translation="MNSVGRRNNRRRNGPRRARRAGAVRRMVVVQPNRAGPKRRTRRR TRGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHRYK ITNVKVEFRSHASASTVGAMFIELDTSCSQSTLGSYINSFTISKSATKNFTAQQIDGK EFRESTVNQFYMLYKANGSTSDTAGQFIITIRVANMTPKXVDSSTSEPSPQPQPEPKP DPQPTPEPQHKRFFEYVGTPYAIIQTRESSDSIAVKSMNDQSFQYIENETSEQRTVQA WWTSNNGVQAQAAFVFPIPAGEYSVNISCEGLQSVDHIGGNRDGYWIGLIAYQNQSGD YWGVGNYAGCDITNLLGTNTWRPGREDLELDGCKFTNGQIVERDAVISFHVKAQGADP KFYLMAPKTMKSDKYNYVVSYGGYTDKRMEFGSISVTVDESDVEAQRYNRHTSTVRKT ENRDYGWMSVLPPYDPDQMPEQEEEQPMVDKEMDSIPPVEPLSPTSDTEAERAFDLRE EELTRARLEYEAATESIPDAAPDVLPSKSEMSSRLIDHDGRSLPKPQSKEVLGTYQGQ NITPDDVPPVIAEKLREVSRAPSTLLYDRQPKTPKSFLSRFLETNKTSLASTGSQSST SGMTREQASEYTRIRKSMGLTAAKEHKASLADTW" /product="aphid transmission protein" /transl_except=(pos:3456..3458,aa:OTHER) /note="P3-P5 fusion created by read-through of the ORF3 stop codon" CDS 2859..3458 /codon_start=1 /protein_id="AGX32131.1" /translation="MNSVGRRNNRRRNGPRRARRAGAVRRMVVVQPNRAGPKRRTRRR TRGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHRYK ITNVKVEFRSHASASTVGAMFIELDTSCSQSTLGSYINSFTISKSATKNFTAQQIDGK EFRESTVNQFYMLYKANGSTSDTAGQFIITIRVANMTPK" /product="coat protein" /note="ORF3" CDS 2896..3360 /codon_start=1 /protein_id="AGX32132.1" /translation="MAQGEQGALAQFGEWLWSNPIEPDQNEELVDAQEEEGQILYLDQ QAGLRYSYSQSTTLRPTPQGQSSSVPTFRNAQRFQVEYSSPTTVTRSQTSRLSLGHTR PPLQSAQCLLNSTLRAHNQPWVATLTHSPSQNQQPKTSPPNRLTGRNSGRAR" /product="movement protein" /note="ORF4" CDS 4942..5073 /codon_start=1 /protein_id="AGX32133.1" /translation="MDDLHVIAVCVLSTTVFAAAVLTISAVASICGSACATANIQRV" /product="ORF6" ORIGIN 1 tagtgaagat tgaccatctc acaaaagctg ttacttgctt gtaacacact acacactcgt 61 tttgtaatcg agaagtagtt gcaaaaacgg tcctctcatt gcctgactag ctgagagcca 121 tccttctatc cccaccgcca ccatgttctt tgaaattctt ataggagcta gtgccaaggc 181 ggtcaaagat ttcatcagcc actgttattc taggctaaaa tctatatatt attctttcaa 241 acgatggctg atggaaatat ctgggcaatt taaggcccat gacgcctttg tcaacatgtg 301 ctttgggcac atggctgaca ttgaagactt cgaggctgaa ctcgctgaag agttcgtcga 361 gagggaggat gaggtggaag aggccaggag cctcttgaaa ctgctggtcg cccaaaaaac 421 taaatccggg gtgaccgagg cttggaacga cttcttcttg aagtcgaggg gcggtgttta 481 cgcaccgctc tcttgtgagc ctaccaagca ggaactagaa gccaagagcg aaaagctcga 541 gaggcttcta gacgaacagc accaattcga ggtgcgagcg gccaagaaat acattaaaga 601 aaagggccgc ggcttcatca actgctggaa cgacttgcgt agtcgtctca gattggtgaa 661 ggacgtcaag gacgaggcga aggataacgc caaagtcgct gcaaagattg gggcggaaat 721 gttcgccccc gttgacgtac agaacctcta cagctttaca gaggtcaaga aagtggagac 781 cggcctcaca aaggaggtcg taaaggaaga gaacggcgaa gaaacgaagc acctcgaacc 841 tatcttggaa gaggtgcggt ctatcaagga catcgccgaa gctagggacg ccgcctccac 901 ttggataaca gagacagtca aattgaaaaa ctcaaccctc aatgctgatg aactgtctct 961 cgccaccatc gcccgctacg ttgaaaatgt aggggacaaa ttcaaactcg acattgctag 1021 caagacatat ctaaagcaat gcgcgacgat gtctgtacca attccaacca ccagggacat 1081 caaaatgaag atggtgttgc agagccctga agcacgtgcc aggcgggaac gcatggacgt 1141 gcttgactct gtgggttttt agaagggctc tgtaccgcct ctggttttga gagcccattt 1201 ccaattctcg ggctgccaga gattgcggtc acagacggag cccggctccg taaggttagt 1261 agtagtatta gataccttag ccaaacccac ctaggcttag tatataaggc accaaatgcc 1321 tccctgcaca acgcgcttgt cgcagtggag agaagagttt ttacagtagg aaagggggac 1381 gaacccattt accccccccg ccctgagcac gacattttca ctgaaacgat ggactacttt 1441 ggtaagtcca taatcgacga ggtgggatac tgcaaaacat acccagcgca gctcctggct 1501 aacagttaca gtgcaggaaa aagggccatg tatcacaaag ccattgcatc cctgaaaaca 1561 atcccctatc aacagaggga tgctaatgtg caagctttcc tgaagaagga aaaacattgg 1621 atgaccaagg acatcgctcc ccgattgata tgcccccgca gcaagcggta caacattatc 1681 ctaggaactc gtttgaaatt caacgagaag aagatcatgc acgccatcga tagtgtgttt 1741 ggatccccca ctgtgctctc tggttatgac aacttcaagc aaggaaggat catagccaag 1801 gagtggcaaa agtttgcatg ccccgtcgcc atcggcgtgg atgctagccg ctttgaccaa 1861 cacgtgtcag agcaggcgct taagtgggaa cacgggatat acaatggaat cttcggtgat 1921 agcgagttgg cccttgcact tgaacaccaa atatccaaca acatcaagat gttcgtagag 1981 gacaagatgc ttaggttcaa ggtgagaggc catagaatgt ccggtgatat taataccagc 2041 atgggaaata agctgataat gtgcggtatg atgcacgcat atttcaagaa gctgggtgtt 2101 gaagctgaac tatgcaacaa tggagacgac tgtgtcatca tcacagacag agccaatgag 2161 aagctctttg atggcatgta cgatcacttc ctccagtatg gtttcaacat ggtgaccgaa 2221 aaaccagttt acgaactgga acaattggag ttttgccagt caaaaccggt ctctattaat 2281 ggaaaataca gaatggttag aaggcccgat agcataggca aagacagcac aacactactg 2341 agcatgctca accagtccga cgtcaaaagt tacatgtcgg ctgtggctca gtgtggtttg 2401 gtgctaaacg ctggagtacc cattctcgaa agtttctata aatgcctata tagaagctct 2461 gggtacaaga aagtgagtga tgaattcatc aaaaacgtca tttcgtatgg aacagatgag 2521 agactacaag gtagacgtac ctttgaagac acgcctatca ccaatcatag taggatgtcc 2581 tactgggtat cattcggagt tgaccctaag atacaacaaa ttgtcgagcg gtactacgac 2641 aatcttacgg tgagtgccca actccagagc gtgaaggtga ctactccaca tctgcaatca 2701 atactactct ccataccgga aaaccaccca caaaacgact attaattacc aaatcttagc 2761 tgggtttgga atagggttta tagtttctat tccctgtaca ttagctctct cctacttcat 2821 ctacaataaa gtttctgaca ccactaggga ggtggtgaat gaattcagta ggccgtagaa 2881 ataaccgcag gagaaatggc ccaaggagag caaggcgcgc tggcgcagtt cggagaatgg 2941 ttgtggtcca acccaatcga gccggaccaa aacgaagaac tcgtcgacgc acaagaggag 3001 gaggggcaaa tcttatatct ggaccagcag gcaggactga ggtattcgta ttctcagtca 3061 acgaccttaa ggccaactcc tcagggacaa tcaagttcgg tcccgacctt tcgcaatgcc 3121 cagcgctttc aggtggaata ctcaagtcct accaccgtta caagatcaca aacgtcaagg 3181 ttgagtttag gtcacacgcg tccgcctcta cagtcggcgc aatgtttatt gaactcgaca 3241 cttcgtgctc acaatcaacc ttgggtagct acattaactc attcaccatc tcaaaatcag 3301 caaccaaaaa cttcaccgcc caacagattg acgggaagga attcagggag agcacggtga 3361 accaatttta tatgctatac aaggcaaatg gtagtacatc tgataccgcc gggcaattta 3421 tcattacaat acgcgttgcc aacatgactc ccaaataggt agactcctca acatcagagc 3481 cttcacccca accccaacca gagcccaaac ctgatccgca gccaacacca gagcctcaac 3541 acaaacggtt tttcgagtac gtaggaacgc cctatgctat catacaaact agggagagtt 3601 cggatagcat tgccgtcaag tcaatgaatg atcaatcctt tcagtacatc gaaaacgaaa 3661 cttctgagca aagaaccgtt caggcatggt ggacctccaa caacggcgtc caagcgcaag 3721 cagcatttgt atttcctata cctgctggag agtatagtgt taatatttct tgtgaaggtc 3781 tacaatcagt ggaccacatt ggaggaaacc gagacggata ttggataggc ttaatagcct 3841 accaaaatca aagcggggat tattggggcg tgggcaacta tgccggctgt gatataacca 3901 atcttctagg aacaaatact tggcgtccag gccgtgaaga tttggaatta gacggctgca 3961 aattcactaa tggacagata gttgagagag acgctgtgat atccttccat gttaaagctc 4021 agggtgctga ccccaagttt tacctcatgg cacccaagac catgaagtcc gacaagtaca 4081 actatgtcgt gtcgtatgga ggttacacag acaaaagaat ggaatttgga tctatatctg 4141 tcactgtgga tgaatccgat gttgaggcac agcgctacaa caggcacact agcacggtta 4201 ggaaaacaga aaatcgagat tatgggtgga tgagcgttct accaccctat gaccctgacc 4261 aaatgccgga gcaagaggaa gagcaaccaa tggtcgataa ggagatggat tcaatacctc 4321 ctgtcgaacc cctttcccca acctccgaca ccgaggctga aagagccttt gacttgagag 4381 aggaagaact tacgagggcc agacttgaat acgaggcagc cactgaatcc atacctgatg 4441 ctgccccgga cgttttaccc tccaaatctg agatgagcag tagactaata gaccatgatg 4501 gaaggtcttt accaaaacct cagtcaaaag aagtcctcgg cacttaccaa ggccagaaca 4561 tcacaccaga tgatgttcct cctgtcatag ctgaaaaatt gcgtgaagtg agcagagcac 4621 catctactct gctttacgac aggcagccaa aaacaccaaa aagctttctt tcccgttttt 4681 tagaaaccaa taaaactagc ttggcttcca ctggttcaca gtcttccacg tcaggaatga 4741 cacgagaaca agcctcagaa tacaccagga ttaggaagtc aatgggcctc acggcagcta 4801 aggagcacaa agccagttta gctgacacat ggtgaagatc aacaccactc gcaaattcgg 4861 atcctgggaa acaggcagaa cttcggttcg taagctcggg taaactagtc ctttaccgtc 4921 gtatcgtact ttgtgtggct gatggatgat ctacatgtga tagcagtctg tgtactgtcc 4981 acgacagtgt tcgcagcggc agtacttaca attagcgccg ttgctagtat ttgcggcagt 5041 gcttgtgcaa ctgccaacat tcaaagggtt taatctgtga tacaacccac caaaaataca 5101 cggggaacaa caggttcagt gagggggcta acgaccccca gcaattggct ggttcttgga 5161 gacttaaatg acctcctata gaacgaagtg gaatcccccc actgatcaaa ttgggaagca 5221 tgcttctgtg ctatacactg ccccagagga cactgggtaa acaaatctaa ccacccaact 5281 caatgaaatg agagcggagg tggcggggtg ggtgacctcg tgatgtacac ccgatcgtca 5341 ggattgaaga cgttaaaact cagcgaccta gtgcaagtcg ttaaactgac tcgggtggat 5401 acaccacacc cggcctaact tgaaggcata cccacgatac gaaacgtggg tttcttggag 5461 ccactacctg tgatgcaagg tagggtatgg gtcttagcaa gccctgcgcc gggaaatgga 5521 cataaaccat agcaatcccc caagtcattt cggtaaacca caggtgaacc gtgccacagg 5581 ccagactacc gaaaggaaaa tcagtatcca acacagcaat gcgttggggg tcacaccctt 5641 cggggtactc ttaacgctga cactcgaaag agcagttcgg caaccc //