LOCUS KF523379 5686 bp RNA linear VRL 22-OCT-2013 DEFINITION Barley yellow dwarf virus-GAV isolate WN5, complete genome. ACCESSION KF523379 VERSION KF523379.1 KEYWORDS . SOURCE Barley yellow dwarf virus-GAV ORGANISM Barley yellow dwarf virus-GAV Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae; Luteovirus; unclassified Luteovirus. REFERENCE 1 (bases 1 to 5686) AUTHORS Song,S., Tao,Y. and Wu,Y. TITLE Genetic characterization of the complete genome of Barley yellow dwarf virus-GAV in Northwestern China JOURNAL Unpublished REFERENCE 2 (bases 1 to 5686) AUTHORS Song,S., Tao,Y. and Wu,Y. TITLE Direct Submission JOURNAL Submitted (09-AUG-2013) State Key Laboratory of Crop Stress Biology for Arid Areas, College of Plant Protection, Northwest A&F University, Taicheng Road 3#, Yangling, Xianyang, Shaanxi 712100, China FEATURES Location/Qualifiers source 1..5686 /mol_type="genomic RNA" /country="China: Weinan" /collection_date="03-May-2013" /host="wheat" /db_xref="taxon:224578" /isolate="WN5" /serotype="GAV" /organism="Barley yellow dwarf virus-GAV" CDS join(142..1158,1158..2744) /ribosomal_slippage /codon_start=1 /protein_id="AGX32111.1" /translation="MFFEILIGASAKAVKDLISHCYSRLKSIYYSFKRWLMEISGQFK AHDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKTRSGVTEAWN DFFLKSRGGVYAPLSCEPTKQELEAKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFIN CWNDLRSRLRLVKDVKDEAKDNAKAAAKIGAEMFAPVDVQNLYSFTEVKKVETGLTKE VVKEENGEETKHLEPILEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATI ARYVENVGDKFKLDIASKSYLKQCATMSVPIPTTKDIKMKMVLQSPEARARRERMDVL DSVGFLEGLCTASGFESPFPILGLPEIAVTDGARLRKVSSSIRYLSQTHLGLVYKAPN ASLHNALVAVERRVFTVGKGDKPIYPPRPEHDIFTETMDYFGKSIIDEVGYCKTYPAQ LLANSYSAGKRAMYHKAIASLKTIPYQQRDANVQAFLKKEKHWMTKDIAPRLICPRSK RYNIILGTRLKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFACPVAIGV DASRFDQHVSEQALKWEHGIYNGIFGDSELALALEHQISDNIKMFVEDKMLRFKVRGH RMSGDINTSMGNKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKLFDGMYDH FLQYGFNMVTEKPVHELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSD VKSYMSAVAQCGLVLNAGVPILESFYKCLYRSSGYKKVSDEFIKNVISYGTDERLQGR RTFEDTPITNHSRMSYWESFGVDPKIQQIVERYYDSLTVSAQLQSVKVTTPHLQSILL SIPENHSQNDY" /product="ORF2" /note="P1-P2 fusion created by -1 ribosomal frameshift" CDS 142..1161 /codon_start=1 /protein_id="AGX32110.1" /translation="MFFEILIGASAKAVKDLISHCYSRLKSIYYSFKRWLMEISGQFK AHDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKTRSGVTEAWN DFFLKSRGGVYAPLSCEPTKQELEAKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFIN CWNDLRSRLRLVKDVKDEAKDNAKAAAKIGAEMFAPVDVQNLYSFTEVKKVETGLTKE VVKEENGEETKHLEPILEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATI ARYVENVGDKFKLDIASKSYLKQCATMSVPIPTTKDIKMKMVLQSPEARARRERMDVL DSVGF" /product="ORF1" CDS 2858..4834 /codon_start=1 /protein_id="AGX32112.1" /translation="MNSVGRRNNRRRNGPRRARRAGAVRRMVVVQPNRAGPKRRTRRR TRGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHRYK ITNVKVEFKSHASASTVGAMFIELDTSCSQSTLGSYINSFTLSKSATKNFTAQQIDGK EFRESTVNQFYMLYKANGSTSDTAGQFIITIRVANMTPKXVDSSTPEPTPQPQPEPKP DPQPTPEPQHKRFFEYVGTPYVIIQTRESSDSIAVKSMNDQSFQYIENETSEQRTVQA WWTSNNGVQAQAAFVFPIPAGEYSVNISCEGLQSVDHIAGNRDGYWIGLIAYQNQSGD YWGVGNYAGCDITNLLGTNTWRPGHEDLELNGCKFTNGQIVERDAVISFHVKAQGADP KFYLMAPKTMKSDKYNYVVSYGGYTDKRMEFGSISVTVDESDVEAQRYNRHTSTVRKT ENRDYGWMSVLPPYDPNQVPEQEEEQPMVDKEMDSRSPVEPPSPTSDTEAERAFDLRE EELTRARLEYEAATESIPDAAPDILPSKSEMSSRPIDHDGRSLPKPQSKEVLGTYQGQ NITPDDVPPVIAEKLREVNRAPSTLLYDRQPKTPKSFLSRFVETNKTSLASTGSQSST SGMTREQASEYTRIRKSMGLTAAKEYKASLADTW" /product="aphid transmission protein" /transl_except=(pos:3455..3457,aa:OTHER) /note="P3-P5 fusion created by read-through of the ORF3 stop codon" CDS 2858..3457 /codon_start=1 /protein_id="AGX32113.1" /translation="MNSVGRRNNRRRNGPRRARRAGAVRRMVVVQPNRAGPKRRTRRR TRGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHRYK ITNVKVEFKSHASASTVGAMFIELDTSCSQSTLGSYINSFTLSKSATKNFTAQQIDGK EFRESTVNQFYMLYKANGSTSDTAGQFIITIRVANMTPK" /product="coat protein" /note="ORF3" CDS 2895..3359 /codon_start=1 /protein_id="AGX32114.1" /translation="MAQGEQGALAQFGEWLWSNPIEPDQNEELVDAQEEEGQILYLDQ QAGLRYSYSQSTTLRPTPQGQSSSVPTFRNAQRFQVEYSSPTTVTRSQTSRLSLSHTR PPLQLAQCLLNSTLRAHNQPWVATLTHSPSQNQQPKTSPPNRLTGRNSGRAR" /product="movement protein" /note="ORF4" CDS 4941..5072 /codon_start=1 /protein_id="AGX32115.1" /translation="MDDLHVIAVCVLSTTVFAVAVLTISAIASICGSACATANIQRV" /product="ORF6" ORIGIN 1 tagtgaagat tgaccatctc acaaaagttg ttacttgctt gtaacacact acacactcgt 61 tttgtaatcg agaagtagtt gcaaaacggt cctctcatag cctgactagc tgagagccat 121 ccttctatcc ccaccgccac catgttcttt gaaattctta taggagctag tgccaaggcg 181 gtcaaagatc tcatcagcca ctgctattct aggctaaaat ctatatatta ttctttcaaa 241 cgatggctga tggaaatatc tgggcaattt aaggcccatg acgcctttgt caacatgtgc 301 tttgggcaca tggctgacat tgaagacttc gaggctgaac tcgctgaaga gttcgccgag 361 agggaggatg aggtggaaga ggccaggagc ctcttgaaac tgctggtcgc ccaaaaaact 421 agatccgggg tgaccgaggc ttggaacgac ttctttttga agtcgagggg tggtgtttac 481 gcaccgctct cttgtgagcc taccaagcag gaactagaag ccaagagcga aaagctcgag 541 aggcttctag acgaacagca ccaattcgag gtgcgagcgg ccaagaaata catcaaagaa 601 aagggccgcg gcttcatcaa ctgctggaac gacttgcgta gtcgtctcag attggtgaag 661 gacgtcaagg acgaggcgaa ggataacgcc aaagccgctg ccaagattgg agcggaaatg 721 ttcgcccccg ttgacgtaca gaacctctac agctttacag aggttaagaa agtggagacc 781 ggcctcacaa aggaggtcgt aaaagaagag aacggcgaag aaacgaagca cctcgaaccc 841 atcttggaag aggtgcggtc tatcaaggat accgccgaag ctagggacgc cgcctccact 901 tggataacag agacagtcaa attgaaaaac tcgaccctca atgctgatga actgtctctc 961 gccaccatcg cccgctacgt tgaaaatgta ggggacaaat tcaaactcga cattgctagc 1021 aagtcatatc taaagcaatg cgcgacgatg tctgtaccaa ttccaaccac caaggacatc 1081 aaaatgaaga tggtgctgca gagccctgaa gcacgtgcca ggcgggaacg catggacgtg 1141 cttgactctg tgggttttta gaggggctct gtaccgcctc tggttttgag agcccatttc 1201 caattctcgg gctgccagag attgcggtca cagacggagc ccggctccgt aaggttagta 1261 gcagtattag ataccttagc caaacccacc taggcttagt atataaggca ccaaatgcct 1321 ccctgcacaa cgcgcttgtc gcagtggaga gaagagtttt tacagtagga aagggggaca 1381 aacccattta ccccccccgc cctgagcacg acattttcac tgaaacgatg gactactttg 1441 gtaagtccat aatcgacgag gtgggatact gtaagacata cccagcgcag ctcctggcta 1501 acagttacag tgcaggaaaa agggccatgt accacaaggc cattgcatcc ctgaaaacaa 1561 tcccctatca acagagggat gctaatgtgc aagctttcct gaagaaggaa aaacattgga 1621 tgaccaagga catcgctccc cgattgatat gcccccgcag caagcggtac aacattatcc 1681 taggaactcg tttgaaattc aacgagaaga agatcatgca cgccatcgat agtgtgtttg 1741 gatcccccac tgtgctctct ggttatgaca acttcaaaca aggaaggatc atagccaaga 1801 agtggcaaaa gtttgcatgc cccgtcgcca tcggcgtgga tgctagccgc tttgaccaac 1861 acgtgtcaga gcaggcgctt aagtgggaac acgggatata caatggaatc ttcggtgata 1921 gcgagttggc ccttgcactt gaacaccaaa tatccgacaa catcaagatg ttcgtagagg 1981 ataagatgct taggttcaag gtgagaggcc acagaatgtc cggtgatatt aataccagca 2041 tgggaaataa gctgataatg tgcggtatga tgcacgcata tttcaagaag ctgggtgttg 2101 aagctgaact atgcaacaat ggagacgact gtgtcatcat cacggacaga gccaatgaga 2161 agctctttga tggcatgtac gaccactttc tccagtatgg tttcaacatg gtgaccgaaa 2221 aaccagttca cgaactggaa caattggagt tttgccagtc aaaaccggtc tctattaatg 2281 gaaaatacag aatggtcaga aggcccgata gcataggcaa agacagcaca acactactga 2341 gcatgctcaa ccaatccgac gtcaaaagtt acatgtcggc tgtggctcag tgtggtctgg 2401 tgcttaacgc tggagtaccc atactcgaaa gtttctataa atgcctatat agaagctctg 2461 ggtacaagaa agtgagtgat gaattcatca aaaacgtcat ttcgtatgga acagatgaga 2521 gactacaagg tagacgtacc tttgaagaca cacctatcac aaatcatagt aggatgtcct 2581 actgggaatc attcggagtt gaccctaaga tacaacaaat tgtcgagcgg tactacgaca 2641 gtcttacggt gagtgcccaa ctccagagcg tgaaggtgac tactccacat ctgcaatcaa 2701 tactactttc cataccggaa aaccactcac aaaacgacta ttaattacca aatcttagct 2761 gggtttggaa tagggtttat agtttctatt ccctgtacat tagctctctc ctactttatc 2821 tacaataaag tttctgacac cactagggag gtggtgaatg aattcagtag gccgtagaaa 2881 taaccgcagg agaaatggcc caaggagagc aaggcgcgct ggcgcagttc ggagaatggt 2941 tgtggtccaa cccaatcgag ccggaccaaa acgaagaact cgtcgacgca caagaggagg 3001 aggggcaaat cttatatctg gaccagcagg caggactgag gtattcgtat tctcagtcaa 3061 cgaccttaag gccaactcct cagggacaat caagttcggt cccgaccttt cgcaatgccc 3121 agcgctttca ggtggaatac tcaagtccta ccaccgttac aagatcacaa acgtcaaggt 3181 tgagtttaag tcacacgcgt ccgcctctac agttggcgca atgtttattg aactcgacac 3241 ttcgtgctca caatcaacct tgggtagcta cattaactca ttcaccctct caaaatcagc 3301 aaccaaaaac ttcaccgccc aacagattga cgggaaggaa ttcagggaga gcacggtgaa 3361 tcaattttat atgctataca aggcaaatgg tagtacatct gataccgccg ggcaattcat 3421 cattacaata cgcgttgcca acatgactcc caaataggta gactcctcaa caccagagcc 3481 tacaccccaa ccccaaccag agcccaaacc tgatccgcag ccaacaccag agcctcaaca 3541 caaacggttt ttcgagtacg taggaacgcc ctatgttatc atacaaacta gggagagttc 3601 ggatagcatt gccgtcaagt caatgaatga tcaatccttt cagtacatcg aaaacgaaac 3661 ttctgagcaa agaaccgttc aggcatggtg gacctccaac aacggcgtcc aagcgcaagc 3721 agcatttgta tttcctatac ccgctggaga gtatagtgtt aatatttctt gtgaaggtct 3781 acaatcagtg gaccacattg caggaaaccg agacggatat tggataggct tgatagccta 3841 ccaaaaccaa agtggggatt attggggcgt gggcaactat gctggctgtg atataaccaa 3901 tcttctagga acaaacactt ggcgtccagg ccatgaagat ttggaattaa acggctgcaa 3961 attcactaat ggacagatag ttgaaagaga cgctgtgata tccttccatg ttaaagctca 4021 gggtgctgac cccaagtttt acctcatggc acccaagacc atgaagtctg acaagtacaa 4081 ctacgtcgtg tcttatggag gttatacaga caaaagaatg gaatttggat ccatatctgt 4141 cactgtggat gaatctgatg ttgaggcaca gcgctacaac aggcacacta gcacggttag 4201 gaaaacagaa aaccgagatt atgggtggat gagtgttcta ccaccctatg accctaacca 4261 agtgccggag caagaggaag aacaaccaat ggtcgacaag gagatggatt caagatctcc 4321 tgtcgaaccc ccttccccaa cctccgacac tgaggctgaa agagcctttg acttgagaga 4381 ggaagaactt acgagggcca gacttgaata cgaggcagcc actgaatcca tacctgatgc 4441 tgccccggac attttaccct caaaatctga aatgagcagt agaccaatag accatgatgg 4501 aaggtcttta ccaaaacctc agtcaaaaga agtcctcggc acttaccaag gccagaacat 4561 cacaccagat gatgttcctc ctgtcatagc tgaaaaattg cgtgaagtga acagagcacc 4621 atctactctg ctttacgaca ggcagccaaa aacaccaaaa agctttcttt cccgtttcgt 4681 agaaactaat aaaactagct tggcttccac tggttcacag tcttccacgt caggaatgac 4741 aagagaacaa gcctcagaat acaccaggat taggaagtca atgggcctca cggcagctaa 4801 ggagtacaaa gccagtttag ctgacacatg gtgaagatca acaccactcg caaattcgga 4861 tcctgggaaa caggcagaac ttcggttcgt aagctcgggt aaactagtcc tttaccgtcg 4921 tatcgtactt tgtgtggctg atggatgatc tacatgtgat agcagtctgt gtgctgtcca 4981 cgacagtgtt cgcagtggca gtacttacaa ttagcgcaat tgctagtatt tgcggcagtg 5041 catgcgcaac tgccaacatt caaagggttt aatctgtgat acaacccacc aaaaaataca 5101 cggggaacaa taggttcagc gagggggcta acgaccccca gcaattggct ggttctggga 5161 gacttaaata acctcctata gaacgaagtg gaatcccccc actgatcaaa ttgggaagca 5221 tgcttctgtg ctatacactg ccccagagga cactgggtaa acaaatctaa ccacccaact 5281 caatgaaatg agagcggagg tggcggggtg ggtgacctcg tgatgtgcac ccgatcgtca 5341 ggattgaaga cgttaaaact caacgaccta gtgcaagtcg ttaaactgac tcgggtggat 5401 acaccacacc cggcccaact tggaggcata cccacgatac gaaacgtggg tttcttggag 5461 ccactacctg tgatgcaagg tagggtatgg gtcttagcaa gccctgcgcc aggaaatgga 5521 cataaaccat agcaatcccc caagtcatct cggcaaacca caggtgaacc gtgccacagg 5581 cctgactacc gaaaggaaaa tcagtatcca acacagcaat gcgttggggg tcacaccctt 5641 cggggtactc ttaacgctga cactcgaaag agcagttcgg caaccc //