LOCUS EU332332 5674 bp RNA linear VRL 06-JUL-2011 DEFINITION Barley yellow dwarf virus-PAV isolate 06KM14 RNA-dependent RNA polymerase, P1, aphid transmission protein, coat protein, movement protein, and P6 genes, complete cds. ACCESSION EU332332 VERSION EU332332.1 KEYWORDS . SOURCE Barley yellow dwarf virus-PAV ORGANISM Barley yellow dwarf virus-PAV Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae; Luteovirus. REFERENCE 1 (bases 1 to 5674) AUTHORS Wu,B., Blanchard-Letort,A., Liu,Y., Zhou,G., Wang,X. and Elena,S.F. TITLE Dynamics of molecular evolution and phylogeography of Barley yellow dwarf virus-PAV JOURNAL PLoS ONE 6 (2), E16896 (2011) PUBMED 21326861 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 5674) AUTHORS Liu,S., Wang,X., Liu,Y. and Zhou,G. TITLE Population genetic diversity of BYDV-PAV from China JOURNAL Unpublished REFERENCE 3 (bases 1 to 5674) AUTHORS Liu,S., Wang,X., Liu,Y. and Zhou,G. TITLE Direct Submission JOURNAL Submitted (07-DEC-2007) Plant Pathology, Institute of Plant Protection, Chinese Acadamy of Agricultural Sciences, West Yuanmingyuan Road No.2, Beijing 100094, China FEATURES Location/Qualifiers source 1..5674 /mol_type="genomic RNA" /country="China:Kunming" /host="wheat" /db_xref="taxon:12040" /isolate="06KM14" /serotype="PAV" /organism="Barley yellow dwarf virus-PAV" CDS join(140..1156,1156..2742) /ribosomal_slippage /codon_start=1 /protein_id="ABY73692.1" /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYFSFKRWLMEISGQFK AHDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWT DFFTKSRGGVYAPLSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFIN CWNDLRSRLRLVKDVKDEAQDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMRE VVKEKNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATI ARYVENVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVL DSVGFLEGLCTASGFESPFPVLGLPEIAVTDGARLRKVSSNIRYLSQTHLGLVYKAPN ASLHNALVAVERRVFTVGKGDKAIYPPRPEHDIFTDTMDYFQKSIIEEVGYCKTYLAQ LLANSYSAGKRAMYHKAIASLKAVPYHQKDANVQAFLKKEKHWMTKDIAPRLICPRSK RYNIILGTRLKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFACPVAIGV DASRFDQHVSEQALKWEHGIYNGIFGDNELALALEHQITNNIKMFVEDKMLRFKVRGH RMSGDINTSMGNKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRVNEELFSGMYDH FLQYGFNMVTEKPVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSD VKSYMSAVAQCGLVLNAGVPILESFYKCLYRSSGYKKVSEEFIKNVISYGTDERLQGR RTYSETPITNHSRMSYWESFGVDPKIQQIVERYYDGLTVSAQLQSVKVTTPHLQSILL SIPENHSQNEY" /product="RNA-dependent RNA polymerase" /note="RdRp; P1-P2 fusion created by -1 ribosomal frameshift" CDS 140..1159 /codon_start=1 /protein_id="ABY73691.1" /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYFSFKRWLMEISGQFK AHDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWT DFFTKSRGGVYAPLSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFIN CWNDLRSRLRLVKDVKDEAQDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMRE VVKEKNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATI ARYVENVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVL DSVGF" /product="P1" /note="ORF1" CDS 2856..4808 /codon_start=1 /protein_id="ABY73693.1" /translation="MNSVGRRGPRRANQNGPRRRRRRTVRPVVVVQPNRAGPRRRNGR RKGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRY KITSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISKTASKVFRSEAING KEFQESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAKXVDSSTPEPKPAPEPTPT PQPTPAPQPAPEPTPAPVPKRFFEYIGTPTGTISTRENSDSISVSKLGGQSMQYIENE KCETKVIDSFWSTNNNVSAQAAFVYPVPEGSYSVNISCEGFQSVDHIGGNEDGYWIGL IAYSNSSGDNWGVGNYKGCSFKNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSF HVEATGTDACFYLMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEAERIT RHAETPIRSKHILVSERYVEPMPTIIDQGLCDVKTPEQEQTLVDEEDKQTVSTEPDIA LQEYEAATVEVPDAEEDVLPSKEQLSSKPMDTSGNKIPKPKEPEVLGTYQGMHIYPED VPPLARQKLREAAKAPTTLLYERTPKKSSNILTRYLESNRSPTTPAAPSVSTVSNMTR EQLAEYTRIRKSLGLTAAKEYKAQFQ" /product="aphid transmission protein" /transl_except=(pos:3456..3458,aa:OTHER) /note="P3-P5 fusion created by ribosomal read-through of the ORF3 stop codon" CDS 2856..3458 /codon_start=1 /protein_id="ABY73694.1" /translation="MNSVGRRGPRRANQNGPRRRRRRTVRPVVVVQPNRAGPRRRNGR RKGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRY KITSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISKTASKVFRSEAING KEFQESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAK" /product="coat protein" /note="ORF3; P3" CDS 2899..3360 /codon_start=1 /protein_id="ABY73695.1" /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAREEEGQILYLDQQ AGLRYSYSQLTTLKPTLPGQSNSAPVYRNAQRFQTEYSSPTIVTRSQVSELSLSHTRP PLRPALSLLNSTPRASNQPWVATLTHSPSARPPPRSSGQRQLTGRNSRNQR" /product="movement protein" /note="P4; ORF4 translated via a leaky scanning mechanism" CDS 4915..5043 /codon_start=1 /protein_id="ABY73696.1" /translation="MEDLHVIAACMLALTVLSGVGAILSCCKWCFSSSFPSPRASL" /product="P6" /note="ORF6; highly variable sequence" ORIGIN 1 tgaagattga ccatctcaca aaagctgtta cgtgcttgta acacactaca cacccgtttt 61 gtgttcggga agtagttgcg aaaacggtcc ccttattgcc tgacaagcta agggccaccc 121 ttcttacccc accgccatca tgtttttcga aatactaata ggagctagcg ctaaggcggt 181 taaggacttt attagccatt gttactctag actaaaatct atatattttt catttaaacg 241 atggctaatg gagatatctg ggcaattcaa ggcccatgac gcctttgtca acatgtgctt 301 tgggcatatg gcagacatag aggacttcga ggcggaactc gctgaggagt tcgccgagag 361 ggaagatgag gtggaagagg cgaggagcct cttgaaactg ctggtcgccc aaaaatctaa 421 aactggggtg accgaggctt ggaccgactt ctttacgaag tcgagaggtg gcgtttatgc 481 gccactttcc tgcgagccta ccaggcagga gctggaagtt aagagcgaga agctcgaaaa 541 acttctagaa gaacagcacc aattcgaggt gcgagcggcc aagaaataca ttaaggaaaa 601 gggccgcggc ttcatcaact gctggaacga cttgcgaagt cgtctcaggc tggtgaagga 661 cgtcaaggac gaggcgcagg acaatgctag agctgctgcc aagataggag cagaaatgtt 721 cgcccccgtt gacgtgcaag acctctacag ctttacagag gtcaagaagg tggagaccgg 781 cctcatgagg gaggtcgtaa aggagaaaaa cggcgaagaa gagaaacacc tcgagcccat 841 catggaagag gtgaggtcta tcaaggacac cgccgaagct agggacgccg cctccacctg 901 gataacagag acagttaagc tgaagaactc aacgcttaac gcagatgaac tgtctcttgc 961 caccatcgcc cgctatgttg aaaacgtagg ggacaaattc aaactcgaca ttgcaagcaa 1021 aacatatcta aagcaagtcg catcgatgtc tgtaccaatc ccaaccaaca aagacatcaa 1081 attgaagatg gtgctgcaga gtcctgaagc acgtgccagg cgggaacgca tggacgtgct 1141 tgactctgtg ggtttttaga ggggctctgt accgcctctg gttttgagag cccatttccc 1201 gttctcgggc tgccagagat cgcggtcaca gacggagccc ggctccgtaa ggttagtagt 1261 aatattagat accttagcca aacccatcta ggtcttgtat acaaggcacc aaatgcctcc 1321 ctgcacaacg cgcttgtagc agtggagaga agagttttta cagtaggaaa gggggataaa 1381 gctatctacc ccccccgccc tgagcatgac attttcactg atacgatgga ttacttccaa 1441 aaatccatta tagaagaggt gggatactgc aagacatatc tagcgcaact cctggctaac 1501 agttatagcg caggaaagag ggccatgtat cacaaagcca ttgcatcctt gaaggctgtc 1561 ccttatcatc agaaggatgc caatgtgcaa gctttcctga agaaggaaaa acattggatg 1621 accaaggaca tcgccccccg gttgatttgc ccccgcagca agcggtacaa cattatccta 1681 ggaactcgtt tgaaattcaa cgagaagaag atcatgcacg caattgatag tgtgtttgga 1741 tcccccactg tgctttctgg ctatgacaac ttcaagcaag gaaggatcat agccaagaag 1801 tggcaaaagt ttgcatgccc cgtcgccatc ggcgtggatg ctagtcgctt tgaccaacac 1861 gtgtcagagc aggcgcttaa gtgggaacac gggatataca atgggatctt cggggacaac 1921 gaactggctc ttgcacttga acaccaaatc accaacaaca tcaagatgtt tgttgaagac 1981 aaaatgctta ggtttaaggt aagaggccac agaatgtccg gtgacattaa taccagcatg 2041 ggaaacaagc tgataatgtg cggcatgatg cacgcatatt tcaagaagct gggtgttgaa 2101 gctgagctat gtaataatgg ggatgattgt gtcatcataa ctgacagagt gaatgaagaa 2161 ctcttcagtg gaatgtatga ccatttccta caatacggct tcaacatggt gaccgagaag 2221 ccagtttacg aactggaaca actggagttt tgccagtcaa aaccggtctc tattaatgga 2281 aagtatagaa tggtcagaag gcccgatagc ataggcaaag atagcacaac actactgagc 2341 atgctcaatc aatccgacgt caagagctac atgtcggctg tggctcagtg tggtttagtg 2401 ctaaacgctg gagtacccat actcgaaagc ttctataagt gcctatatag aagctcgggg 2461 tacaagaaag tgagtgagga attcatcaaa aacgtcattt cgtatggaac agatgagaga 2521 ctacaaggta gacgtaccta ttcggaaaca cctatcacaa accacagtag aatgtcctac 2581 tgggaatcat tcggagttga ccctaagata cagcaaatcg tcgagaggta ctacgacggt 2641 cttacggtaa gtgcccaact ccagagtgtg aaggtgacga ctccacatct gcaatcaata 2701 ctgctttcca taccggaaaa ccactcacaa aacgaatatt aattaccaaa tcttagctgg 2761 gtttgggata gggttcatag ttagtatacc ctgtacatta gctctcgcgt actttattta 2821 caataaagtt tcagacacca ctagagaggt ggtgaatgaa ttcagtaggc cgtagaggac 2881 ctagacgcgc aaatcaaaat ggcccaagaa ggaggcgccg tagaacagtt cggccagtgg 2941 ttgtggtcca acccaatcga gcaggaccca gacgacgaaa tggtcgacgc aagggaagag 3001 gaggggcaaa tcctgtattt agaccaacag gcgggactga ggtattcgta ttctcagttg 3061 acaaccttaa agccaactct tccggggcaa tcaaattcgg ccccagtcta tcgcaatgcc 3121 cagcgctttc agacggaata ctcaagtcct accatcgtta caagatcaca agtatccgag 3181 ttgagtttaa gtcacacgcg tccgccacta cggccggcgc tatctttatt gaactcgaca 3241 ccgcgtgcaa gcaatcagcc ctgggtagct acattaactc attcaccatc agcaagaccg 3301 cctccaaggt cttccggtca gaggcaatta acgggaagga attccaggaa tcaacgatag 3361 accaattttg gatgctctac aaggccaatg gaaccaccac tgacacggca ggacaattca 3421 tcattacgat gagtgtcagt ttgatgacgg ccaaataggt agactcctca acaccggaac 3481 cgaaacctgc accagaacca acaccaactc cacagccaac accagctcca caacccgcac 3541 cggaaccaac tcctgcacct gtccccaaac gattctttga gtatatcggt actccaaccg 3601 gtacaatctc aactagagaa aactctgaca gtatatctgt cagtaagctc ggtggacagt 3661 cgatgcagta tatagagaat gagaaatgtg agacgaaagt cattgattcc ttttggagca 3721 ctaacaacaa cgtatctgcg caagcagcat tcgtctatcc agtgccagag ggatcataca 3781 gcgttaacat ttcgtgcgag ggttttcaat cagttgacca cattggtggt aacgaagatg 3841 gctactggat tggtttgatt gcctactcca attcatctgg tgataattgg ggtgtgggca 3901 attacaaagg gtgtagtttc aaaaatttct tggcaaccaa cacttggaga ccaggccaca 3961 aagatctcaa gttaaatgat tgccagttca cagatggaca aatagttgaa agggatgccg 4021 tgatgtcttt ccatgtagaa gcaacaggta ctgatgcctg tttctacctt atggctccca 4081 aaacaatgaa aactgacaaa tacaactatg ttgtctcgta tggagggtac accaacaagc 4141 gaatggaatt cggtaccata tctgtaacat gtgatgaatc cgatgttgag gcagaacgca 4201 taacaaggca cgctgaaacc cccatccgct ccaaacacat tcttgtgtcc gaacggtatg 4261 tggaaccaat gcccaccata atcgatcaag gcttgtgtga cgtgaaaact cccgagcaag 4321 aacaaacgtt ggtggatgaa gaagacaagc aaactgtttc cacagaacct gatatagcac 4381 tccaggaata tgaggctgca acagttgaag ttcctgatgc tgaagaggat gttttgccct 4441 ccaaggaaca gttgtcttct aaaccaatgg acacgtccgg caacaaaata ccaaaaccca 4501 aggaacctga agtacttggg acataccagg gcatgcacat ttaccctgag gacgtgccac 4561 ccctagcgcg acaaaaacta cgtgaagccg ccaaagcacc taccacgttg ctctacgaaa 4621 gaacgccaaa gaagagcagc aatatcttga ctcgttattt ggagtctaat aggtccccta 4681 ccactcccgc tgccccatca gtgtcaactg tatcaaatat gacaagggaa cagcttgcgg 4741 agtacactag aattaggaaa tcccttggac tcacagcagc aaaggaatac aaggcgcagt 4801 ttcagtgaag ataacaccac tagcacaatt cggatcctgg gaaacaggca gaactttggt 4861 tcataagctc gggtaggctg tcaacctacc gccgtatcgt tttgtgtttg gccgatggaa 4921 gatcttcacg ttatcgccgc ttgtatgctt gctttgactg tgctctcagg ggtaggcgct 4981 atcctgagct gttgcaaatg gtgcttcagc tcttcctttc cctccccccg cgcttctctt 5041 tagcaaaacc cgtttcccgg tctgtgcggg aaacaaccaa aaatatcggg gagctccggc 5101 tcagtgagag gattaacgac cctcagtaat tggctggtct tggcgggcat gaataaccct 5161 ctataagacg aagtggtaac cgccactgat caaatggtga acatgcttct gtgttgtaca 5221 ctgccccggg gccaaccggg tcaacaaggc tatcccacca actcgatgaa atgagagtgg 5281 agtgggcgga gtgggtgact tcgtgatgta cacccgatcg tcaggattga agacgttaaa 5341 actcgacgac ctggtgcaag tcgttaaact gactcgggtg gatacacccc acccggccca 5401 gcatgttggc atacccacga tacgaaacgt gggtctcttg gagccactac ctgtgatgca 5461 aggtagggta cgagtcttag caagctctgt gccaggagat ggacataaac catagcaatc 5521 caacgtgttg cagctctggg gcgaaccaca ggtgaaccgt gccacgggcc tggttaccga 5581 aaggaaagcc agtatccaac acagcaatgt gttgggggtt acacccttcg gggtactctt 5641 aacgctgaca ctcgaaagag cagttcggca accc //