LOCUS AJ515484 7563 bp mRNA linear VRL 19-SEP-2003 DEFINITION Barley yellow mosaic virus 1 gene for polyprotein 1, genomic RNA, isolate ASL1. ACCESSION AJ515484 VERSION AJ515484.1 KEYWORDS 1 gene; 6K1 protein; 6K2 protein; CI protein; coat protein; NIa-Pro; protein; NIb protein; P3 protein; polyprotein 1; VPg protein. SOURCE Barley yellow mosaic virus ORGANISM Barley yellow mosaic virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae; Bymovirus. REFERENCE 1 AUTHORS Kuhne,T., Shi,N., Proeseler,G., Adams,M.J. and Kanyuka,K. TITLE The ability of a bymovirus to overcome the rym4-mediated resistance in barley correlates with a codon change in the VPg coding region on RNA1 JOURNAL J. Gen. Virol. 84 (PT 10), 2853-2859 (2003) PUBMED 13679620 REFERENCE 2 (bases 1 to 7563) AUTHORS Adams,M.J. TITLE Direct Submission JOURNAL Submitted (07-NOV-2002) Adams M.J., Plant Pathogen Interactions Division, Rothamsted Research, Harpenden, Herts AL5 2JQ, UNITED KINGDOM FEATURES Location/Qualifiers source 1..7563 /mol_type="mRNA" /country="Germany" /isolation_source="Aschersleben" /host="Hordeum vulgare" /db_xref="taxon:12465" /strain="1 (common)" /isolate="ASL1" /organism="Barley yellow mosaic virus" gene 1..7563 /gene="1" 5'UTR <1..134 /gene="1" CDS 135..7373 /db_xref="GOA:Q70WS2" /db_xref="InterPro:IPR001205" /db_xref="InterPro:IPR001592" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR001730" /db_xref="InterPro:IPR007094" /db_xref="InterPro:IPR009003" /db_xref="InterPro:IPR013648" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014021" /db_xref="UniProtKB/TrEMBL:Q70WS2" /codon_start=1 /protein_id="CAD56476.1" /gene="1" /translation="MEQTLAQAVSRRGKTNTLTAEERKPFSPMNFSANFVAPELFYSA NVRKIKNIFRERSTTRFLDAISSDFELVAFLTLSPAHLMQLETTLRQEIRSCVVPIVT SDASFETVAVIKTALDGMRFHFGHTTLEKGWMSMMRHAESCLQESSSSAVNDLQMQIK RVGSLLLSGKNRVESCELSVLNLTARRFRIEYGLNGTYFGEHVAMLFDLKRYIYGTVP KEFLWAKTKKHSLFTTPEWIKRTPIGCFLFCLRVIPILHRFGVAISLLYWSCVAALNF PAFMAFLFKRQFAKYLAHSFAKHSIYFIFLTIIAILWSFRTFASQKPKIVLQARSTAE KEKKLMMILASVVGITYLFDYDIAETLGNCLHKISRLSSYLLDDHQGIASRMFGASYG LQAGDSAEDAVTTIISDLLSVTFKIVDEDASQGTVEDASETTFHSWVGVNTLAGRNMS RPLQYDVNKTYALTPQNVQLQARAMADANNCWSMVVGHTGSGKSTYLPVQYSNYLSTK SDRRQQILICEPTQAATENVCAGVAANLGRAVYGRHEGWSRMGDHCIQVMTYGSAPQC HAMDPSFISTFDAIFLDEAHDVKEHSLVFESICDTFKSVRKFYVSATPRDGSVCPEAA RKYPLHVETSVCDSYRKFIAAQGGGDLLDISKHDTALVFLAGRPECIKAANAWNASVT GEKRAFPLSSDNFATDFSMLTERLKTHKTIIFTTNIIETGVTLSVDCVVDFGHTMRPC LDLNQKSLRLDRRRVTRNERQQRIGRAGRLKDGYAIVCGDVDRAVNVISPDVLYGAAL LSFKHNVPFYMNETFESSWLEGVTKAQADTMTIFKLPIFLTRDLINADGSVAREFLDV LKKHQFTTSDIKQAPSVTAKHIFPTWASYFSLHQALHYGDDKDEIPHELRYARVPFSV TTLSKFDWPALALACEKHRASMSNVFAGIEEPARVVTLQTNPANIQASITHLTHMSKN YKTLIENNQHVRQSMMTNVMFKWFSSTRITKDLDRNLRRCTDNLSVVEATLSSLRQIL AGNTQVYATPHMQSTLEDIIELQASDTLTEESLANALGIFVPKCNLFLLLATKGFKLV YVVCILLLVNLVYTGLRKWREHLKQKGSNEILTNTMPVSEGGEILAEVMKMEPKMRKN IKRDMHAAVESKLCGFTFVFPDDDKIGLEGKGNKYRPREDARLMYSTREDATFDAWNE KAKERRKKVTDKAEPELRRAYEKRPYFNFYDLQTDSNILEAIFYTTEGDEFFRTADPN RDMNLVADKLRSFLDTKLVVGHHQRKLLEETANVVIKDTKGAAHKMEISQHDPDFLEQ NGSGKVGYPEHRGQFRQEGVAVTGDYDLEAEFGADADEITLEASTGILLSQVGVDVAT RVGRICIGTFNMNCYFYSDWILVPGHLQDRSGNVTIQFPDQTVQTTTDALNANGVRRF YGLDIIAIRRPAILRPRTKLVKAFAIEEPVIAQMVFVDAQGVRKFTQSDWARKEENSG RWSHKISTVLGMCGCPVLDVGKNRLIGIHVATNYTKKRNEFQPFTQEVVDFINGPGTK IPYCPWVFDRPACGYSSHNALFEKPTTLADVIHMQASDGLHNINNAIEGFGSSLKGQL VSPPTESTRQRFDKLFGSGSFELIGQMNKGLIDKHVIVGENDDVYDFMREHPTFTWLK DFMNEYAPSVLSYSAYYKDLCKYNRAKHVLTYNPEELHCATKGLIKMLEDAGLTQGSV RTPQQVVSDIQWNTSAGPSYQGKKRDLCAHLSDDEVLHLAEVCRQQFLEGKSTGVWNG SLKAELRTIEKVEAEKTRVFTASPITSLFAMKFYVDDFNKKFYATNLKAPHTVGINKF GRGWEKLHDKLNRPGWLHGSGDGSRFDSSIDPFFFDVVKTIRKHFLPSEHHKAIDLIY DEILNTTICLANGMVIRKNVGNNSGQPSTVVDNTLVLMTAFLYAYIHKTGDRELALLN ERFIFVCNGDDNKFAISPQFDEEFGHDFSPELVELGLTYEFDDITSDICENPYMSLTM VKTPFGVGFSLPVERIIAIMQWSKKGGVLHSYLAGISAIYESFNTPKLFKSIYAYLLW LTEEHGAEILAAMTQSSTALPIPSMLDVYRLHYGDDEIWLQAADPLTDAQKEAAHTAA ADRARLDLADADRRRKVEADRVEAARVEKAADAALKPVNLTATRMPTEDDGKLKTPSG ARIPSSAADGNWSVPATKQVNAGLTLKIPLNKLKSVPRSVMEHNNSVALESELKAWTD AVRTSLGITTDEAWIDALIPFIGWCCNNGTSDKHAENQVMQIDSGKGAVTEMSLSPFI VHARMNGGLRRIMRNYSDETVLLITNNKLVAHWSMKHGASANVKYAFDFFVPRSWMNP QDIEVSKQARLAALGTGTYNTMLTSDTTNLRKTTNHRVLDSDGHPELT" /product="polyprotein 1" mat_peptide 135..1118 /gene="1" /product="P3 protein" mat_peptide 1119..1316 /gene="1" /product="6K1 protein" mat_peptide 1317..3293 /gene="1" /product="CI protein" mat_peptide 3294..3659 /gene="1" /product="6K2 protein" mat_peptide 3660..4220 /gene="1" /product="VPg protein" mat_peptide 4221..4895 /gene="1" /product="NIa-Pro protein" mat_peptide 4896..6479 /gene="1" /product="NIb protein" mat_peptide 6480..7370 /gene="1" /product="Coat protein" 3'UTR 7374..>7563 /gene="1" ORIGIN 1 aacaaacaca aacatcgcac gcttcccgag ctcacaacac ctgtagagtg atttttgtca 61 tcctactgtt tgtaagcttt tcagcaaatc aacccgcttg cttttgcacc tccttcacct 121 tcactctcgc tcttatggag caaaccctag ctcaagctgt gtcacggaga ggtaaaacaa 181 acacacttac ggcagaagag cggaaacctt tcagccccat gaatttttcc gcaaactttg 241 ttgctcctga gctcttttat agtgctaatg tgaggaaaat taaaaatatc ttcagagagc 301 gcagcacaac tcggtttctg gatgcaattt caagtgattt tgagctcgtt gcttttctca 361 ctttgagtcc cgctcactta atgcaacttg agacaactct gcgccaagaa atacgttcgt 421 gtgtcgtgcc aattgttacc tctgatgcta gcttcgaaac agtcgctgtc atcaaaactg 481 ctctggatgg catgagattt cactttggac acaccactct tgaaaagggg tggatgtcca 541 tgatgcgcca tgcagagagt tgcctgcaag agagctcctc ttcggctgtg aatgatctgc 601 agatgcagat taaacgcgtt ggatcattgc tcttgagtgg aaaaaatcgc gtagaaagct 661 gcgaactatc tgtcttgaac ctcacagcgc gacgtttcag gatcgaatat gggctaaatg 721 gtacatactt tggcgaacat gttgctatgc tattcgactt aaagcgttat atctatggta 781 ccgtgccaaa agagtttttg tgggcgaaaa ccaaaaagca ctcgctattc acaacccccg 841 agtggatcaa gcgtacgccc atcggctgtt tcttgttctg tcttcgcgtt atccctatct 901 tacataggtt tggtgtggcc atatcactcc tttactggtc gtgtgttgct gctctgaatt 961 ttcctgcttt tatggctttc ttatttaagc gtcagtttgc taagtattta gctcactctt 1021 ttgctaaaca ctccatctac tttatatttt taactataat tgctatttta tggtcttttc 1081 gcacttttgc ttctcaaaaa ccaaaaatag tgcttcaggc taggagcaca gcagaaaaag 1141 agaaaaagct tatgatgatt ctagctagtg tcgttgggat cacttatctc ttcgattatg 1201 acatagcaga aactctcggg aattgtctac ataaaataag ccgtctatcc tcatatcttc 1261 tcgacgacca tcaaggcatc gcatcacgaa tgtttggagc gagctatggg cttcaggctg 1321 gcgatagtgc tgaggatgca gttacaacga taatcagcga cctactgtct gttactttta 1381 aaattgtgga cgaagatgca tcacagggca ccgtggagga tgcatctgag acaacctttc 1441 acagttgggt tggtgttaac acacttgcag gtcgcaatat gtcaagacca ctccagtatg 1501 acgtcaataa aacatatgca ctcacacctc aaaatgtcca gctccaagcg cgagctatgg 1561 cagacgctaa caactgctgg tcaatggttg ttggtcatac aggatctggg aagtcaacat 1621 acttacctgt gcagtactcc aattacttat ctaccaagag tgatagacga cagcagattc 1681 ttatctgcga gccaactcag gctgccactg agaacgtttg cgctggcgtt gctgccaatc 1741 ttggcagagc tgtttacggg cgccatgagg gttggtccag aatgggggat cattgcattc 1801 aagttatgac gtatggttcc gcgccccagt gccatgctat ggaccctagc ttcatatcaa 1861 ctttcgacgc aatcttcctt gatgaagcac acgacgtcaa agagcactct ttagtctttg 1921 agagcatttg tgacacattt aaatccgttc gaaagttcta tgtttcagcc actcctagag 1981 atggaagtgt atgtcctgaa gcagccagga aatatccttt acatgttgaa actagcgttt 2041 gcgattcgta tcggaagttc attgcagctc aaggtggggg agatttgctg gacatctcaa 2101 aacatgacac agctttagtc tttctagcag gacggcctga gtgtattaaa gctgctaatg 2161 cctggaatgc tagtgtcacc ggtgagaagc gcgcctttcc tttgtcgagc gacaactttg 2221 ctaccgactt ctcaatgctc accgagaggc tcaaaacaca caaaaccatc atcttcacca 2281 cgaacataat tgagacaggt gttactctta gcgttgattg tgttgttgat ttcggccata 2341 cgatgcgccc atgtttggat ctcaatcaaa aatcattacg tcttgatcga cgcagagtga 2401 cgcgaaacga aagacagcag agaattgggc gagcaggtcg gctcaaagac gggtacgcca 2461 tagtgtgtgg agatgttgat agggctgtaa atgtcatctc tcctgatgtt ctttatggtg 2521 ccgctcttct gagttttaaa cacaatgtgc ctttctacat gaacgaaaca tttgagagtt 2581 cctggttgga gggtgttaca aaggcacaag ctgacacaat gacaatattc aagcttccta 2641 tatttctaac acgagacctc attaatgcag atggttcagt tgctagggag tttctcgatg 2701 ttttaaagaa gcatcaattc acaacaagtg acataaagca agcaccaagt gtcacagcca 2761 aacacatctt cccaacttgg gcttcgtact tctctctcca tcaggcgctt cattatggtg 2821 atgacaagga tgagatacca cacgagttgc gatatgcgcg cgttcctttc tccgtcacaa 2881 ctttgagcaa attcgattgg ccagccttag ctcttgcatg cgagaaacat agggcttcca 2941 tgtcaaatgt gtttgctggc atcgaggaac ccgcacgcgt tgttactcta caaacaaatc 3001 ctgcgaacat acaagcaagc atcacacatt taacacatat gagcaagaac tataaaactc 3061 ttattgaaaa caaccagcac gtgcgccaat ccatgatgac gaatgttatg ttcaagtggt 3121 tttcttccac tcgcattacc aaagatcttg ataggaactt gcgaagatgc acggataacc 3181 tctcagttgt cgaggccacg cttagctcac ttaggcaaat cttagctggc aacacgcagg 3241 tttacgcaac gccgcacatg cagagcactc ttgaggatat tattgagctc caggctagcg 3301 acacactcac ggaagaaagc ttagcaaacg cacttggcat ctttgtccca aagtgcaacc 3361 tctttctgct gctagctact aaaggtttca agcttgtgta cgttgtctgc atcttacttc 3421 ttgtgaacct tgtttacact ggtcttcgta agtggcgcga gcatctcaag caaaagggaa 3481 gtaacgaaat cctaactaac acaatgccag ttagcgaagg gggcgaaatt ctcgctgaag 3541 tcatgaaaat ggagcctaaa atgagaaaga acatcaagag ggatatgcat gcagctgttg 3601 agagcaaact atgtggcttc acttttgttt ttccagatga tgataaaatt ggtcttgaag 3661 gcaagggaaa caaataccgc cctcgcgaag acgctcgcct gatgtactcc actagagaag 3721 acgctacctt tgacgcctgg aatgagaaag cgaaggaaag acgcaagaaa gtaaccgaca 3781 aagctgagcc agagcttcgc agagcctatg agaagagacc atacttcaat ttctacgacc 3841 ttcaaacaga tagcaacatt ctggaagcta ttttctacac cactgaaggt gatgagtttt 3901 tccgaacagc agaccctaac agggacatga acttggttgc tgataaactg cgctcttttc 3961 tcgatacaaa gcttgttgtt ggacaccatc agcggaagct actagaagaa acagctaatg 4021 ttgttatcaa ggacacgaag ggagctgcgc acaagatgga aatttcacag catgatccag 4081 attttctgga gcagaatggg tccggcaaag ttgggtatcc agaacaccga ggacagtttc 4141 ggcaggaagg agtcgccgtc acaggggatt acgatcttga agctgagttt ggcgccgatg 4201 ctgatgaaat aacgctcgag gcctctactg gaattttatt gtcacaagtt ggggtcgatg 4261 ttgcaactcg agttggaaga atttgcattg gcactttcaa tatgaactgt tacttctata 4321 gcgactggat tctagttcca ggacacctgc aagatagatc tggcaacgta acaattcaat 4381 tccctgacca aacagtgcaa accacaaccg acgcactcaa cgcgaatggt gtgagacgat 4441 tctatggatt agatataata gcaattcgtc gccctgctat cttgcggcct cgcaccaagt 4501 tggtcaaagc ttttgctatt gaggaaccag ttatcgcaca aatggtcttt gttgatgcac 4561 agggagtccg caagttcact caatctgatt gggccaggaa ggaggagaat tctgggcgtt 4621 ggtcacacaa gatctccact gttcttggta tgtgtggatg cccagtcttg gacgttggaa 4681 agaacagatt aatagggatc catgttgcca caaactacac aaagaagcgc aacgagttcc 4741 aacccttcac tcaggaggtt gtcgacttta taaatggacc tggaacaaaa attccctact 4801 gcccatgggt atttgataga ccggcttgtg ggtattcatc ccacaacgct ttgttcgaga 4861 aaccaaccac actggctgac gtcattcaca tgcaggcttc tgatggtttg cacaacatca 4921 acaatgccat tgagggtttt gggagctcac tgaagggtca gcttgtgtca ccacctactg 4981 aatccaccag gcaacgtttc gataagctgt ttggtagcgg cagctttgag ctcattgggc 5041 agatgaacaa aggcttaatc gacaagcacg tgattgttgg ggaaaacgat gatgtctatg 5101 acttcatgcg cgagcaccca acatttactt ggttgaaaga tttcatgaat gaatatgcgc 5161 ccagtgtttt gtcttattct gcttactaca aggacctttg taagtataat cgtgcaaaac 5221 acgtgctcac ttacaaccca gaagagctcc attgtgcgac gaaaggactg atcaagatgt 5281 tggaagacgc tggcttgaca caaggcagtg tgaggacacc ccaacaagtt gtttcggaca 5341 ttcaatggaa cacttccgct ggaccaagtt atcaagggaa gaaacgcgac ctctgtgccc 5401 acttgagcga tgacgaggtg ctgcatcttg ctgaggtttg tcgtcaacaa tttcttgagg 5461 gcaagtcaac tggagtgtgg aacggttctc tgaaagctga attgagaacc attgagaaag 5521 ttgaggcgga gaaaacgcgc gttttcacag cctctcccat aacaagcctg tttgccatga 5581 aattctacgt tgatgacttt aacaagaagt tctatgctac caatctgaaa gccccccaca 5641 ctgttggcat caataagttc ggtaggggat gggaaaaatt gcatgacaag cttaatcgcc 5701 ctggatggtt gcacggcagt ggggatggtt ctaggttcga tagctctatc gatcctttct 5761 tctttgacgt tgtgaaaact attcgtaagc actttctccc ttctgagcat cataaagcca 5821 ttgatctcat atatgatgag attctcaaca caaccatctg cctggctaat gggatggtta 5881 tcaggaagaa tgttggaaac aatagcgggc agcctagtac tgttgttgat aacacacttg 5941 tgcttatgac tgcattcctc tacgcataca ttcacaagac aggggatcgt gagttagcct 6001 tgctaaacga gcgtttcatc tttgtttgca acggtgatga caataagttt gccatatctc 6061 cgcagtttga tgaagagttt gggcacgatt tttccccaga acttgttgaa cttggactta 6121 cgtatgagtt tgatgacatc actagcgaca tttgcgagaa tccttacatg tccctcacta 6181 tggttaaaac tccttttggt gttggttttt ctcttcccgt ggaaagaatc atagccataa 6241 tgcagtggtc caagaaaggg ggggttttgc actcatattt agctggcatc tctgcaattt 6301 acgaatcctt caatacacca aaactcttca aatcaattta tgcgtacctt ctttggctca 6361 ctgaggagca cggggcagaa attcttgcag ccatgactca atcctcaacc gcccttccta 6421 taccatcaat gctcgatgtt tatcggttgc actatggtga tgatgaaatt tggctgcaag 6481 cagctgatcc tctcactgat gcgcaaaaag aagctgcaca cactgccgca gctgatagag 6541 cacgcctcga cctagccgac gctgaccgta gacgtaaagt tgaagcggac cgtgtggaag 6601 cggcaagagt tgaaaaggca gctgatgctg cgctaaaacc agttaacctc acagcaacac 6661 gcatgcccac agaagatgat ggcaaactta aaacgccatc tggtgctaga ataccatcat 6721 cagctgcaga tggtaactgg agcgtgccgg caacgaagca agttaacgct ggtttaacac 6781 tcaaaattcc cctgaataag ctcaaaagtg tgcctaggtc tgttatggaa cataacaact 6841 cagttgcact tgaatctgag ctgaaagcct ggactgatgc tgtgcgcaca agtttaggta 6901 tcacaactga tgaggcatgg atcgatgccc tcataccctt catcggatgg tgctgcaaca 6961 atggcacctc agacaagcat gctgagaatc aagtaatgca aattgacagc ggaaagggag 7021 ctgtcacaga gatgagtctg tccccattta ttgttcatgc tcgaatgaat ggtggactcc 7081 gaaggatcat gcgtaactac agtgatgaaa ccgtcttact catcacaaac aacaaactag 7141 ttgcacattg gtcaatgaag catggcgctt ctgcaaatgt aaaatatgct ttcgatttct 7201 tcgtcccacg atcatggatg aacccacagg acatcgaagt atcaaagcaa gcgcgcttag 7261 cagcacttgg aactggaacg tataacacca tgttaacttc cgacactacc aatctgcgta 7321 agacaaccaa ccacagggtt ctggactcag atggacaccc agaactaacc taaaccatca 7381 ccccgtgcct tatacatcac ccacccccac tcataattca gtctttaaat tatgttcgtg 7441 acgtctttgt atcaggctcg gaacggttct atgatccata tgcctttggc agttacagtg 7501 tcagcattct cattgaggag tatgacagcg tttgatcagc cgttttcaat catccgtcgt 7561 tgg //