LOCUS AJ515483 7563 bp mRNA linear VRL 19-SEP-2003 DEFINITION Barley yellow mosaic virus 1 gene for polyprotein 1, genomic RNA, isolate ASL2. ACCESSION AJ515483 VERSION AJ515483.1 KEYWORDS 1 gene; 6K1 protein; 6K2 protein; CI protein; coat protein; NIa-Pro; protein; NIb protein; P3 protein; polyprotein 1; VPg protein. SOURCE Barley yellow mosaic virus ORGANISM Barley yellow mosaic virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae; Bymovirus. REFERENCE 1 AUTHORS Kuhne,T., Shi,N., Proeseler,G., Adams,M.J. and Kanyuka,K. TITLE The ability of a bymovirus to overcome the rym4-mediated resistance in barley correlates with a codon change in the VPg coding region on RNA1 JOURNAL J. Gen. Virol. 84 (PT 10), 2853-2859 (2003) PUBMED 13679620 REFERENCE 2 (bases 1 to 7563) AUTHORS Adams,M.J. TITLE Direct Submission JOURNAL Submitted (07-NOV-2002) Adams M.J., Plant Pathogen Interactions Division, Rothamsted Research, Harpenden, Herts AL5 2JQ, UNITED KINGDOM FEATURES Location/Qualifiers source 1..7563 /mol_type="mRNA" /country="Germany" /isolation_source="Aschersleben" /host="Hordeum vulgare" /db_xref="taxon:12465" /strain="2 (resistance-breaking)" /isolate="ASL2" /organism="Barley yellow mosaic virus" gene 1..7563 /gene="1" 5'UTR <1..134 /gene="1" CDS 135..7373 /db_xref="GOA:Q70WS3" /db_xref="InterPro:IPR001205" /db_xref="InterPro:IPR001592" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR001730" /db_xref="InterPro:IPR007094" /db_xref="InterPro:IPR009003" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR013648" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014021" /db_xref="UniProtKB/TrEMBL:Q70WS3" /codon_start=1 /protein_id="CAD56475.1" /gene="1" /translation="MEQTLAQAVSRRGKTNTPMAEERKPFSPMNFSANFVAPELFYSA NVRKIKNIFRERSTTRFLDAISSDFELAAFLTLSPAHLMQLETTLRQEIRSCVVPIVT SDASFETVAVIKTALDGMRFHFGHTTLEKGWMSMMRHAESCLQESSSSAVNDLQMQIK RVGSLLLSGKNRVESCELSVLNLTARRFRIEYGLNGTYFGEHVAMLLDLKRYIYGTVP KEFLWAKTKKHSLFTTPEWIKRTPIDCFLFCLRVIPILRRFGVAISLLYWSCVAALNF PAFMAFLFKRQFAKYLAHSFAKHSIYFIFLTIIAILWSFRTFASQKPKIVLQARSTAE KEKKLMMILASVVGITYLFDYDIAEALGNCLHKISRLSSYLLDDHQGIASRMFGASYG LQAGDSAEDAVTTIISDLLSVTFKIVDEDASQGTVEDASETTFHSWVGVNTLAGRNMS RPLQYDVNKTYALTPQNVQLQARAMADANNCWSMVVGHTGSGKSTYLPVQYSNYLSTK SDRRQQILICEPTQAATENVCAGVAANLGRAVYGRHEGWSRMGDHCIQVMTYGSALQC HAMDPSFISTFDAIFLDEAHDVKEHSLVFESICDTFKSVRKFYVSATPRDGSVCPEAA RKYPLHVETSVCDSYRKFIAAQGGGDLLDISKHDTALVFLAGRPECIKAANAWNASVT GEKRAFPLSSDNFATDFSMLTERLKTHKTIIFTTNIIETGVTLSVDCVVDFGHTMRPC LDLNQKSLRLDRRRVTRNERQQRIGRAGRLKDGYAIVCGDVDRAVNVISPDVLYGAAL LSFKHNVPFYMNETFESSWLEGVTKAQADTMTIFKLPIFLTRDLINADGSVAREFLDV LKKHQFTTSDIKQAPSVTAKHIFPTWASYFSLHQALHYGDDKDEIPHELRYARVPFSV TTLSKFDWPALALACEKHRASMSNVFAGIEEPARVVTLQTNPANIQASITHLTHMSKN YKTLIESNQHVRQSMMTNVMFKWFSSTRITKDLDRNLRRCTDNLSVVEATLSSLRQIL AGNTQVHATPHMQSTLEDIIELQASDTLTEESLANALGIFVPKCNLFLLLATKGFKLV YVVCILLLVNLVYTGLRKWREHLKQKGSNEILTNTMPVSEGGEILAEVMKMEPKMRKN IKRDMDAAVESKLCGFTFVFPDDDKIGLEGKGNKYRPREDARLMYSTREDATFDAWNE KAKERRKKVTDRAEPELRRAYEKRPYFNFYDLQTDSNILEAIFYTTEGDEFFRTADPN RDMNLVADKLRSFLDTKLVVGHHQRKLLEETANVIIKDTKGTAHHMEISQHDPDFLKQ NGSGKVGYPEHRGQFRQEGVAVTGDYDLEAEFGADADEITLEASTGILLSQVGVDVAT RVGRICIGTFNMNCYFYSDWIIVPGHLQDRSGNVTIQFPDQTVQTTTDALNANGVKRF YGLDVIAIRRPAILRPRTKLVKAFAIEEPVIAQMVFVDAQGVRKFTQSDWARKEENSG RWSHKISTVLGMCGCPVLDVGKNRLIGIHVATNYTKKRNEFQPFTQEVVDFINGPGTK IPYCPWVFDRPACGYSSHNALFEKPTTLADVIHMQASDGLHNINNAIEGFGSSLKGQL VSPPTESTRQRFDKLFGSGSFELIGQMNKGLIDKHVIVGENDDVYDFMREHPTFTWLK DFMNEYAPSVLSYSAYYKDLCKYNRAKHVLTYNPEELHCATKGLIKMLEDAGLTQGSV RTPQQVVSDIQWNTSAGPSYQGKKRDLCAHLSDDEVLHLAEVCRQQFLESKSTGVWNG SLKAELRTIEKVEAEKTRVFTASPITSLFAMKFYVDDFNKKFYATNLKAPHTVGINKF GRGWEKLHDKLNRPGWLHGSGDGSRFDSSIDPFFFDVVKTIRKHFLPSEHHKAIDLIY DEILNTTICLANGMVIRKNVGNNSGQPSTVVDNTLVLMTAFLYAYIHKTGDRELALLN ERFIFVCNGDDNKFAISPQFDEEFGHDFSPELVELGLTYEFDDITSDICENPYMSLTM VKTPFGVGFSLPVERIIAIMQWSKKGGVLHSYLAGISAIYESFNTPKLFKSIYAYLLW LTEEHEAEILAAMTQSSTALPIPSMLDVYRLHYGDDEIWLQAADPITDAQKEAAHTAA ADRARLDLADADRRRKVEADRVEAARVKKAADAVLKPVNLTATRMPAEDDGKLKTPSG ARIPSSAADGNWSVPATKQVNAGLTLKIPLNKLKSVPKSVMEHNNSVALESELKAWTD AVRTSLGITTDEAWIDALIPFIGWCCNNGTSDKHAENQVMQIDSGKGAVTEMSLSPFI VHARMNGGLRRVMRNYSDETVLLITNNKLVAHWSMKHGASANAKYAFDFFVPRSWMNP QDIEVSKQARLAALGTGTYNTMLTSDTTNLRKTTNHRVLDSDGHPELT" /product="polyprotein 1" mat_peptide 135..1118 /gene="1" /product="P3 protein" mat_peptide 1119..1316 /gene="1" /product="6K1 protein" mat_peptide 1317..3293 /gene="1" /product="CI protein" mat_peptide 3294..3659 /gene="1" /product="6K2 protein" mat_peptide 3660..4220 /gene="1" /product="VPg protein" mat_peptide 4221..4895 /gene="1" /product="NIa-Pro protein" mat_peptide 4896..6479 /gene="1" /product="NIb protein" mat_peptide 6480..7370 /gene="1" /product="Coat protein" 3'UTR 7374..>7563 /gene="1" ORIGIN 1 aacaaacaca aacatcgcac gcttcccgag ctcacaacac ctgtagagtg atttttgtca 61 tcctactgtt tgtaagcttt tcagcaaatc aacccgcttg ctttcgcatc tccttcacct 121 tcactctcgc tcttatggag caaaccctag ctcaagctgt gtcacggaga ggtaaaacaa 181 acacacctat ggcagaagag cggaaacctt tcagccccat gaatttttcc gcaaactttg 241 ttgctcctga gctcttttat agtgctaatg tgaggaaaat taaaaatatc ttcagagagc 301 gcagcacaac ccggtttctg gatgcaattt caagtgattt tgagctcgct gcttttctca 361 ctttgagtcc cgctcactta atgcaacttg agacaactct gcgccaagag atacgttcgt 421 gtgttgtgcc aattgttacc tctgacgcta gcttcgaaac agtcgctgtc atcaaaactg 481 ctctggatgg catgaggttt cactttggac acaccactct tgaaaagggg tggatgtcta 541 tgatgcgcca tgcagagagt tgcctgcaag agagctcctc atcggctgtg aatgatctgc 601 agatgcagat taaacgcgtt ggatcactgc tcttgagtgg aaaaaatcgc gtagaaagct 661 gcgaactatc tgtcttgaac ctcacagcgc gacgtttcag gatcgaatat gggctaaatg 721 gtacatactt tggcgaacat gttgctatgc tactcgactt aaagcgttat atttatggta 781 ccgtgccaaa agagttcttg tgggcgaaaa ccaaaaagca ctcgctattc acaacccccg 841 agtggatcaa gcgtacgccc atcgactgtt tcttgttctg tcttcgcgtt atccctatct 901 tacgtaggtt tggtgtggcc atatcactcc tttactggtc gtgtgttgct gctctgaatt 961 ttcctgcttt tatggctttc ttatttaagc gtcagtttgc taagtattta gctcactctt 1021 ttgctaaaca ctccatctac tttatatttt taactataat tgctatttta tggtcttttc 1081 gcacttttgc ttctcaaaaa ccaaaaatag tgcttcaggc taggagcaca gcagaaaaag 1141 agaaaaagct tatgatgatt ctagctagtg tcgttgggat cacttatctc ttcgattatg 1201 acatagcaga agctctcggg aattgtctac ataaaataag ccgtttatcc tcatatcttc 1261 ttgacgacca tcaaggcatc gcatcacgaa tgtttggagc gagctatggg cttcaggctg 1321 gcgatagtgc tgaggatgca gtcacaacga taatcagcga cctactgtct gttactttta 1381 aaattgtgga cgaagacgca tcacagggta ccgtggagga tgcatctgag acaacctttc 1441 acagttgggt tggtgttaac acacttgcag gtcgcaatat gtcaagacca ctccagtatg 1501 acgtcaataa aacgtacgca ctcacacctc aaaatgtcca gctccaagcg cgggctatgg 1561 cagacgctaa caactgctgg tcaatggtgg ttggtcatac aggatctgga aagtcaacat 1621 acttacctgt gcagtactcc aattacttat ccaccaagag tgataggcga cagcagattc 1681 ttatctgcga gccaactcag gctgccactg agaatgtttg cgctggcgtt gctgccaatc 1741 ttggcagagc tgtttacggg cgtcatgagg gttggtccag aatgggggat cattgcattc 1801 aagttatgac gtatggttcc gcgctccagt gccatgctat ggaccctagc ttcatatcaa 1861 ctttcgacgc aattttcctt gatgaagcac acgacgtcaa agagcactct ctagtctttg 1921 agagcatttg tgacacattt aaatccgttc gaaagttcta cgtttcggcc actcctagag 1981 atggaagtgt gtgtcctgaa gcagctagga aatatccttt acatgtcgaa actagcgttt 2041 gcgattcgta tcggaagttc attgcagctc aaggcggggg agatttgctg gacatctcaa 2101 aacatgacac agctttagtc tttctagcag gacggcctga gtgtattaaa gctgctaatg 2161 cctggaatgc tagtgtcacc ggtgagaagc gcgcctttcc tttgtcgagc gacaactttg 2221 ctaccgactt ctcaatgctc accgagaggc tcaaaacaca caaaaccatc atcttcacca 2281 cgaacataat tgagacaggt gtcactctta gcgttgattg tgttgttgat ttcggccata 2341 cgatgcgccc atgtttggat ctcaatcaaa aatcattacg tcttgatcga cgcagagtga 2401 cgcgaaatga aagacagcag agaattgggc gagcaggtcg gcttaaagac gggtacgcca 2461 tagtgtgtgg agatgttgat agggctgtaa atgtcatctc tcctgatgtt ctttatggtg 2521 ccgctcttct gagttttaaa cacaatgtgc ctttctacat gaacgaaaca tttgagagtt 2581 cctggttgga gggtgttaca aaggcacaag ctgacacaat gacaatattc aagcttccta 2641 tatttctaac acgagatctc attaatgcag atggctcagt tgctagggag tttctcgatg 2701 ttttaaagaa gcatcaattc acaacaagtg acataaagca agcaccaagt gtcacagcca 2761 aacatatctt cccaacttgg gcttcatact tctctctcca tcaggcgctt cattatggtg 2821 atgacaagga tgagatacca cacgagttgc gatatgcgcg cgttcctttc tccgtcacaa 2881 ctttgagcaa attcgattgg ccagccttag ctcttgcatg cgagaaacat agagcttcca 2941 tgtcaaatgt gtttgctggc atcgaggaac ccgcacgcgt tgtcactcta caaacaaatc 3001 ctgcgaacat acaagctagc atcacacatt taacgcatat gagtaagaac tataaaactc 3061 ttattgaaag caaccagcac gtgcgccaat ccatgatgac gaatgttatg ttcaagtggt 3121 tttcttccac tcgcattact aaagatcttg ataggaactt gcgaagatgc acggataacc 3181 tctcagttgt cgaggccacg cttagctcac ttagacaaat cttagctggc aacacgcagg 3241 ttcacgcaac gccgcacatg cagagcactc ttgaggatat tattgaactc caggctagcg 3301 acacactcac ggaagaaagc ttagcaaacg cacttggcat ctttgttcca aagtgcaacc 3361 tctttctgct gctagctact aaaggtttca agcttgtgta cgttgtctgc atcttacttc 3421 ttgtgaacct tgtttatact ggtcttcgta agtggcgcga gcatctcaag caaaagggaa 3481 gtaacgaaat cctaactaac acaatgccag ttagcgaagg gggcgaaatt ctcgctgaag 3541 ttatgaaaat ggagcctaaa atgagaaaga acatcaagag ggatatggat gcagctgttg 3601 agagcaaact atgtggcttc acttttgttt tcccagatga tgataaaatt ggtcttgaag 3661 gcaagggaaa caaataccgc cctcgcgaag acgctcgcct gatgtactcc actagagaag 3721 acgccacctt tgacgcctgg aatgagaaag cgaaggaaag acgcaagaaa gtaaccgaca 3781 gagctgagcc agagcttcgg agagcctatg agaagagacc atacttcaat ttctacgacc 3841 ttcaaacaga tagcaacatt ctggaagcta ttttctacac cactgaaggt gatgagtttt 3901 tccgaacagc agaccctaac agggacatga acttggttgc tgataaactg cgctcttttc 3961 tcgatacaaa gcttgttgtt ggacaccatc agcggaagct actagaagag acagctaatg 4021 ttattatcaa ggacacgaaa ggaactgcgc accacatgga aatctcacag catgatccag 4081 attttctgaa gcagaatggg tccggcaaag ttgggtatcc agaacaccga ggacagtttc 4141 ggcaggaagg agttgccgtc acaggggatt acgatcttga agctgagttt ggcgccgatg 4201 ctgatgaaat aacgcttgag gcctctactg gaatcttatt gtcacaagtt ggggttgatg 4261 ttgcaactcg agttggaaga atttgcattg gcactttcaa tatgaactgt tacttctata 4321 gcgactggat tatagttcca ggacacctgc aagatagatc tggcaacgta acaattcaat 4381 tccctgacca aacagtgcaa accacaaccg acgcactcaa cgcaaatggt gtgaaacgat 4441 tctatggatt agatgtaata gcaattcgtc gccctgctat cttgcggcct cgcaccaagt 4501 tagtcaaagc ttttgctatt gaggaaccag ttatcgcaca aatggtcttt gttgacgcac 4561 agggagtccg taagttcact caatctgatt gggccaggaa ggaggagaat tctgggcgtt 4621 ggtcacacaa gatctccact gttcttggta tgtgcggatg cccagtcttg gacgttggaa 4681 agaacagatt gatagggatc catgttgcca caaactacac aaagaaacgc aacgagttcc 4741 aacccttcac tcaggaggtt gtcgacttta taaatggacc tggaacaaaa atcccctact 4801 gcccatgggt atttgataga ccagcttgtg ggtattcatc ccacaacgct ttgttcgaga 4861 aaccaaccac actggctgat gtcattcaca tgcaggcttc tgatggtttg cacaacatca 4921 acaatgccat tgagggtttt gggagctcac tgaagggtca gcttgtgtca ccacctactg 4981 aatctaccag gcaacgtttc gataagctgt ttggtagtgg cagctttgag ctcattgggc 5041 agatgaacaa aggcttaatc gacaagcacg tgattgttgg ggaaaacgat gatgtttatg 5101 acttcatgcg cgagcaccca acatttactt ggttgaaaga tttcatgaat gaatatgcgc 5161 ctagtgtttt gtcttattct gcttactaca aggacctttg taagtataat cgtgcaaaac 5221 acgtgctcac ttacaaccca gaagagctcc attgtgcgac gaaaggactg atcaagatgc 5281 tggaagacgc tggcttgaca caaggcagtg tgaggacacc ccaacaagtt gtttcggaca 5341 ttcaatggaa cacttccgct ggaccgagtt atcaagggaa gaaacgcgac ctctgtgccc 5401 acttgagcga tgacgaggtg ctgcatcttg ctgaggtttg tcgtcaacag tttcttgaga 5461 gcaagtcaac tggagtgtgg aacggttctc tgaaagctga gttgagaacc attgagaaag 5521 ttgaggcgga gaaaacgcgc gttttcacag cctctcccat aacaagcctg tttgccatga 5581 aattctacgt tgatgacttt aacaagaagt tctatgctac caatctgaaa gccccccaca 5641 ctgttggcat caataagttc ggtaggggat gggaaaaatt gcatgacaag cttaatcgcc 5701 ctggatggtt gcacggcagt ggggatggtt ctaggttcga tagctctatc gatcctttct 5761 tctttgacgt tgtgaaaact attcgtaagc actttctccc ttctgagcat cataaagcca 5821 ttgatctcat atatgatgag attctcaaca caaccatctg cctggctaat gggatggtta 5881 tcaggaagaa tgttggaaac aatagcgggc agcctagtac tgttgttgac aacacacttg 5941 tgcttatgac tgcattcctc tacgcataca ttcacaagac aggggatcgt gagttagcct 6001 tgctaaacga gcgtttcatc tttgtttgca acggtgatga caataagttt gccatatctc 6061 cgcagtttga tgaagagttt gggcacgatt tttccccaga acttgttgaa cttggactta 6121 cgtatgagtt cgatgacatc actagcgaca tttgcgagaa tccttatatg tccctcacca 6181 tggttaaaac tccttttggt gttggtttct ctcttcccgt ggaaagaatc atagccataa 6241 tgcagtggtc caagaaaggg ggggttttgc actcatattt agctggcatc tctgcaattt 6301 acgaatcctt caacacacca aaactcttca aatcaatcta tgcgtacctt ctttggctca 6361 ctgaggagca cgaggcagaa attcttgcag ccatgactca atcctcaacc gcccttccta 6421 taccatcaat gctcgatgtt tatcggttgc actatggtga tgatgaaatt tggctgcaag 6481 cagctgatcc tatcactgat gcgcaaaaag aagctgcgca cactgccgca gctgatagag 6541 cacgccttga cctagccgac gctgatcgta gacgtaaagt tgaagcggac cgtgtggaag 6601 cggcaagagt taaaaaggca gctgatgctg tgctaaaacc agttaacctc acagcaacac 6661 gcatgcccgc ggaagatgat ggcaaactca aaacgccatc tggtgctaga ataccatcat 6721 cagctgcaga tggtaactgg agcgtgccgg caacgaagca agttaacgct ggtttaacac 6781 tcaaaattcc cctgaataag ctcaaaagtg tgcctaagtc tgttatggaa cataacaact 6841 cagttgcact tgaatctgag ctaaaagcct ggactgatgc tgtgcgcaca agtttaggta 6901 tcacaactga tgaggcatgg atcgatgccc tcataccctt catcggatgg tgctgcaaca 6961 atggcacctc agacaagcat gctgagaatc aagtaatgca aattgacagc ggaaagggag 7021 ctgtcacaga gatgagtctg tccccattta ttgttcatgc tcgaatgaat ggtggactcc 7081 gaagggtcat gcgtaactac agtgatgaaa ccgtcttact catcacaaac aacaaactag 7141 ttgcacattg gtcaatgaag catggcgctt ctgcaaatgc aaaatatgct ttcgatttct 7201 tcgtcccacg atcatggatg aacccacagg atatcgaagt atcaaagcaa gcgcgcttag 7261 cagcacttgg aactggaacg tataacacca tgttaacttc cgacactacc aatctgcgta 7321 agacaaccaa ccacagggtt ctggactcag atggacaccc agaactaacc taaaccatca 7381 ccccgtgcct tatacatcac ccacccccac tcataattca gtctttaaat tatgttcgtg 7441 acgtctttgt atcaggctcg gaacggttct atgatccata tgcctttggc agttacaatg 7501 tcagcattct cattgaggag tatgacagcg tttgatcagc cgttttcaat catccgtcgt 7561 tgg //