LOCUS NC_032484 5818 bp RNA linear VRL 01-SEP-2017 DEFINITION Bastrovirus/VietNam/Rat/16715_10 non-structural polyprotein and structural polyprotein genes, complete cds. ACCESSION NC_032484 NC_032418 NC_032489 VERSION NC_032484.1 DBSOURCE BioProject accession PRJNA359250 KEYWORDS RefSeq. SOURCE Bastrovirus/VietNam/Rat/16715_10 ORGANISM Bastrovirus/VietNam/Rat/16715_10 Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Astroviridae; unclassified Astroviridae. REFERENCE 1 (bases 1 to 5818) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (29-DEC-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 2 (bases 1 to 5818) AUTHORS Oude Munnink,B.B., Phan,M.V.T., Kellam,P., van der Hoek,L. and Cotten,M. TITLE Direct Submission JOURNAL Submitted (27-SEP-2016) Wellcome Trust Sanger Institute, Wellcome Trust Sanger Institute, Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to KX907129. On or before Sep 1, 2017 this sequence version replaced gi:1126394433, gi:1126394260. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..5818 /mol_type="genomic RNA" /country="Viet Nam" /isolation_source="feces" /collection_date="12-Nov-2014" /host="rat" /db_xref="taxon:1906175" /isolate="16715_10" /organism="Bastrovirus/VietNam/Rat/16715_10" gene 8..3679 /locus_tag="BVE99_gp1" /db_xref="GeneID:30745571" CDS 8..3679 /locus_tag="BVE99_gp1" /db_xref="GeneID:30745571" /codon_start=1 /protein_id="YP_009333313.1" /translation="MDLSFSAAQRGPWEAQHTACFGGAVARRVRDALHMPYVLNREEK EFILKVLRCDVVFEDRIAHTHPMVRALHAFANHHAYRHCEGAIDIGGDFRNIKRRAVH VCGLVDNARDELRLHRAIVDTRPNLAGYCIHGVENCHERAERGISVHSAYDITWPQWL QAFDSHGLRVVDVWLLEPEELFGRTTPPIYGIQMHKMADKWVMLLDDACAGYTHSDFE WRKYREMGGTIGTHFNIGCSPEGGWGPLRRYTLFRCVHPLRQITLRHPVDRNLVHVPT PAGQVIQCPRTVWQNLLSWACSRADNKFDFSSLLAYARALRQRLVVGGQTVQEGWSQD PRQVHELCVACFVMAAAMRYTRTQNIAVAFAELRREQQRGGFERWFDELKDKLGLTRV GVIRFLEKDLHRLRELDDKADILTHYLPAIYQAPEDEVPETAPQEAPAAPPDNHEQDC MNDYRFCLESTAASAGEFAGVAQEALDNLPDQLRPICPARIFVQGPPGSGKSTAFADW STSKKQQCLVVVPTRKQVSDWTARGFHACTTMSAFKTAAAYRRIIIDEVTLQHAGAVQ FLARMPHLEKVYALGDLHQIDFTDFQCTGFRADLKRLYEDWSRTTLTETHRCPQDVVQ LLKPIYGWTGTSRVEKSIIKGVCNRGAQHLCFSQATKALLATRGLTALTVHEAQGSTF RAVCIHVEAADAPLVRTSRAHTVVAITRHTGSLVIVENGTIALSERLEELRAQLLTEP TLTEVTVPEDIVPVAVHATSGSDEPPNTGATLADMGTTFGACSGIERVTKENFPEPAN KTTLCLSEGYSECQTARIGFTDVVQEACRQSRPQDRGAQVAALLDRVCARNNNVGARL ARQRATAMFTAFRQWCDDQPAILEQEPPLRTAECLRAAAEKDPELRQYFKEHNLRDLI TCKNHLKAQAKFAGNVLVKAKAGQGINAWSKQANLAIGPFIRAAQEVLLRCLKPNVCM VLHQSERQLADWINSQDLEVPCVCNDFTEFDSTQNDTTAHFEAKVLRWLGTPDSVCQL YLALRAAARIESTMLCVDAPYARMSGEANTLFGNTIVTMAVNALLLPGNFAWAAFKGD DSIVANPEHEAPVEGVEQLTGMICKVEKPETPEFVGFVISDRAYPDLKRAVGKLLGKG YPNDPIARADLMRSVQERLWLIPKDRQHQCCMTNAARHMVEYAEAVNWLCALKNAAAE LPSPCLKHCLEVRINNPVE" /product="non-structural polyprotein" gene 3685..5691 /locus_tag="BVE99_gp2" /db_xref="GeneID:30745570" CDS 3685..5691 /locus_tag="BVE99_gp2" /db_xref="GeneID:30745570" /codon_start=1 /protein_id="YP_009333314.1" /translation="MPKTAQNPAKPQAKKGNPTTKPKNKPNKPKDPAVPKLNKRLTAL ERKDDGPKVADQFTCTVNLGVVNAAEVDDFTRAMQVFLSPLLLKDVNEASARTTPLST RASQYSMYRISHLRIDVLPLVGASGVGGTTGLLSLQLDSSQGAAVNYDAVATRPHVVL LPGQRTSFKPRAPVGTGFKGGWYYTNTAANDGAACLGPSAEVFLLGRTTNIYTNSPFT GPLFRLAAHATYQFANYTPNPTLATLQTDLQETRAEVSTNDRGEIVVSFDTPLLGGAF HTTRPGIGDAIFAVLDTVGGLASQVPVLGPLLDTGLAFLKPIFKSNTGFAAAPTHDYL VCGSFDQAKVGNALTTNKGLNGPVEVSLQCQQLTPMSDGSSLAPVGPEATITLPHRYF EMTPVSSAKFAITCPFFGGVTEEALPTEGGVARVPSLRINQRIKCTNYANVNEHITTD YIGLRDFDYYLHNQADEQDILVKWHINPPIYQPTNSAVLQHKGDVADDYSGYLGRLQD LCAQADLLPSMVSSDGWTQGWLTVSSTPDQFKVPVGTRLVCVHYNIWQPTMLEAGIDP PRQQRFGWLMVEPNGSQYVLGFYDPHVKKNNAVNLQGVLHSFTITDSRDIAGWAGGKE IARAVQSAKCLPAPPPDTEPSTSSTASPRDSSATRQTSRWQPAW" /product="structural polyprotein" ORIGIN 1 tgccaccatg gacctctcct tctccgccgc ccaacgcggc ccatgggaag cacaacacac 61 cgcatgtttc ggtggtgcag ttgcccgcag agtccgcgac gcactgcaca tgccgtacgt 121 gctcaaccgc gaggagaaag aattcatcct caaggtgctg cgatgcgacg tcgtgttcga 181 ggatcgcatc gctcacacgc accccatggt gcgtgcactc catgcgtttg caaaccatca 241 tgcctacagg cattgtgagg gagcaattga cataggagga gacttccgca acatcaagcg 301 gagggcagtc cacgtttgtg ggctggttga caacgccagg gacgagttgc gcctacatcg 361 cgcaatagta gatacgcgcc caaatcttgc gggctattgt atccacggcg ttgaaaactg 421 ccatgagcgc gccgagcgcg gcataagcgt gcattccgct tatgacatca cttggccgca 481 atggctccag gccttcgaca gtcacggcct ccgggtcgtt gatgtctggc ttctggagcc 541 tgaggagctg ttcggccgca caacaccccc catatatggc atccagatgc acaagatggc 601 agacaaatgg gtgatgcttc tggacgacgc ttgcgcaggt tacacccact cagattttga 661 gtggcgcaag tacagagaga tgggggggac aataggcacc cacttcaaca ttggctgctc 721 acccgaaggg ggctgggggc cattgaggcg ctacacgctg ttcaggtgcg tgcacccctt 781 gcgccagatc accctgcggc acccagtgga ccgcaacctg gtacatgtcc ctacacccgc 841 ggggcaggta atacaatgcc cgcggacggt ctggcaaaac ctgcttagct gggcctgcag 901 cagagcagac aataagtttg atttcagctc actgctggcg tacgcgcgtg cgttgcgcca 961 acgccttgtg gtgggagggc agaccgtgca ggagggctgg tcacaagacc caaggcaggt 1021 gcatgagctc tgcgtggcct gctttgtgat ggccgccgcc atgcgctaca cgcgcacgca 1081 aaacattgca gtggccttcg cagagctgcg ccgagaacaa caacgcgggg gctttgagcg 1141 gtggttcgat gagctcaagg ataagctcgg actcacgcga gtgggcgtga tccgtttcct 1201 ggagaaggat ctgcacaggc tcagggagct ggacgacaag gcagacatcc tcacgcatta 1261 cctgccggcc atatatcagg ccccggagga tgaggtgccg gagaccgcac cacaagaggc 1321 gccagctgcc ccaccggaca accacgagca ggactgcatg aacgattacc gcttctgcct 1381 tgaatcaacc gccgccagcg ccggtgagtt tgcaggggtt gcccaagaag cactagacaa 1441 cctccccgac cagttgcggc caatctgccc ggcccgcatt tttgtccagg gccccccagg 1501 gagcggcaaa tccaccgcct tcgcagactg gtccaccagc aagaagcagc agtgcctcgt 1561 ggtggtgcct acacgcaagc aggtgtctga ctggaccgcc cgcggctttc atgcgtgtac 1621 aacaatgtct gccttcaaga cagctgcagc ataccgtcgc atcatcatcg acgaagtcac 1681 cctgcagcac gccggggctg tccagttcct ggcacgcatg ccacacctgg agaaggtgta 1741 cgccctcggg gatctgcacc agatcgactt caccgacttt caatgtactg gcttccgggc 1801 agacctgaag cgcctctacg aagactggtc ccggaccact ctgacagaga cacaccgctg 1861 ccctcaggat gtggttcagc tgctcaaacc catttacggc tggaccggca cgagccgagt 1921 ggagaagtca ataattaagg gggtgtgcaa ccgaggcgca cagcacttgt gcttcagcca 1981 ggccaccaag gccctgctcg ccacccgggg actcaccgcc ttgacagtgc atgaggcgca 2041 aggctccacc ttccgcgccg tgtgcataca cgtcgaggca gcggacgccc ctctggtgcg 2101 aaccagcaga gcacacacag tcgtggccat cacacgccac actggaagcc tggtgatcgt 2161 ggagaacggc acgattgctc tcagcgaacg ccttgaggag ctcagagcac aattgttaac 2221 tgagccgacc ctcacagagg tgactgtgcc tgaagatatc gtgccagtgg ctgtgcatgc 2281 aacctccggg tcagatgaac caccgaacac cggcgccacg ctcgccgaca tgggtaccac 2341 gttcggggcg tgctcgggca tcgagcgggt gacaaaggaa aacttcccag agccggccaa 2401 caagacaacg ctctgcctct ccgagggcta ctcggagtgc cagacagccc gcatcggctt 2461 caccgacgtg gtccaggaag catgccgcca atcacggcca caggacaggg gcgcccaggt 2521 cgcagccctg ctggaccgcg tgtgcgcccg caacaataac gtcggggcac gcctggcccg 2581 gcagagagcc accgccatgt tcacagcctt ccgccagtgg tgtgatgatc agcccgcaat 2641 tctggagcaa gagccacctc tcagaacagc cgagtgtttg cgggcagcag cagagaaaga 2701 cccggaacta cggcagtact tcaaggagca taacttgcgg gacctcatca cgtgtaagaa 2761 ccacctgaag gcccaggcga agttcgccgg gaacgtgctt gtcaaggcca aagcgggcca 2821 gggcatcaat gcatggagta agcaggccaa tttggccatc ggccctttca tccgggccgc 2881 ccaggaggtg ctgctgcgat gcctgaaacc taacgtttgc atggtgttgc accagagcga 2941 gcgacagctg gcggactgga tcaactccca ggaccttgag gtgccgtgcg tgtgcaacga 3001 cttcaccgag ttcgacagca cgcagaatga cacaacagca cacttcgagg ccaaggtgct 3061 gcgctggctc ggcacacccg acagcgtgtg ccagctctac ctcgcgctcc gtgcagcggc 3121 ccggattgag agcaccatgc tgtgcgtcga cgcaccctac gcacgcatgt ctggcgaggc 3181 caacacgctg tttggcaaca cgatcgtcac catggctgtc aacgccttgc tgctgcccgg 3241 caactttgcg tgggcggcat tcaaaggcga cgacagcatc gtggccaacc ctgagcatga 3301 ggctccagtg gaaggcgtcg agcagctgac cggcatgatt tgcaaggtgg agaagccaga 3361 aactccggag tttgtgggtt ttgtcatttc ggaccgcgcg tacccagacc tcaagcgcgc 3421 ggttggcaaa ctgcttggta aggggtaccc aaacgatccg atcgcacggg cagacctcat 3481 gcgcagcgtc caggaacgct tgtggctgat accaaaagac aggcaacacc aatgctgcat 3541 gaccaacgcg gcaaggcaca tggtggagta cgcggaggca gttaactggt tgtgtgcgct 3601 gaaaaacgca gcagcagaac tgccgtcgcc gtgcttgaag cactgcctgg aagtcagaat 3661 aaataaccct gtggaataga gcgcatgccg aagacagcgc aaaatccagc caagccccag 3721 gctaagaagg gtaaccccac caccaagcca aagaacaaac ccaacaaacc caaagacccc 3781 gccgtcccaa aactcaacaa gagactcact gcccttgagc gcaaggatga cggccccaag 3841 gtggcggacc agttcacctg cacagtcaac ctcggcgttg ttaacgcagc cgaggttgac 3901 gatttcaccc gagctatgca ggtgttcctt agtccactgc tgctcaagga tgtcaatgaa 3961 gctagcgccc gcaccacacc cctttccacc agagcctccc agtacagcat gtaccgcatc 4021 agccatctgc ggattgacgt gctgccactg gtcggcgctt cgggggttgg tggaaccaca 4081 gggctgctca gtttgcaatt ggactcctcg cagggcgcag ctgtcaacta cgacgctgtg 4141 gccacacggc cacacgtcgt gctgttgccc ggccaaagaa ccagtttcaa acctcgtgca 4201 cctgtgggca ctggcttcaa aggtggctgg tactacacca acacagccgc caatgatggt 4261 gcagcctgcc tcgggccctc agcagaggtg tttctcctgg gtcgcaccac caacatctac 4321 accaacagcc ccttcactgg ccccctgttt cgtcttgctg cccatgcaac ctaccagttc 4381 gccaactaca ctccaaatcc taccttggcg acactgcaaa cagacttgca ggagactcga 4441 gcagaggtct caacgaacga ccgcggagag atcgtcgtgt cattcgacac accactcctg 4501 ggtggcgcct tccacaccac gcgcccaggc attggcgatg ctatcttcgc ggttctcgac 4561 acagtgggcg gccttgcctc gcaagtgccc gtcctcggac ctctgctcga cacagggctc 4621 gccttcctaa agccaatctt caaatccaac actggctttg cggcggcacc cacccacgac 4681 tacctggtct gcggctcttt cgaccaggcc aaagtgggga acgccctcac taccaacaag 4741 ggactgaatg gcccagttga ggtcagcctc cagtgccagc agctgacccc tatgtccgat 4801 ggcagctcgc tggcccccgt cgggccggaa gcgaccataa ctttgccaca caggtacttt 4861 gaaatgacgc ctgtaagctc ggcgaagttt gccatcacct gccccttctt cggaggggtg 4921 acggaggagg cactccccac tgagggtgga gtggcccgtg tccctagcct ccgcatcaat 4981 caaaggatca aatgcacgaa ttatgccaat gtgaatgagc acatcaccac agattacatt 5041 ggcttgcgtg actttgatta ttacctccat aaccaggcag atgaacagga catcctggtg 5101 aagtggcaca tcaacccgcc catctaccaa cccaccaact ccgccgtgct ccaacacaaa 5161 ggcgacgtgg cagatgatta cagcgggtat cttgggcgcc tgcaagacct ttgcgcccag 5221 gcagacctcc tcccaagcat ggtttcaagc gatggctgga cacagggctg gctcacggtg 5281 tccagcacac ccgaccaatt caaagtgccg gtcggcacac gcctcgtgtg tgtgcactac 5341 aacatctggc aacccaccat gctcgaggcg gggatcgacc ccccgaggca acaacgcttc 5401 ggctggctga tggtggagcc aaacggctcc cagtacgttt tgggcttcta cgaccctcac 5461 gtcaagaaga acaatgcagt aaatctgcaa ggcgtactgc acagcttcac catcacagac 5521 agcagagaca tcgctggttg ggcaggcggt aaagaaatag caagagctgt tcagagcgca 5581 aaatgcttgc cagcgccgcc gcccgatacg gagccttcca cctcctcaac tgcctctccg 5641 agagactctt cggccactcg ccagacgtca cgctggcagc cggcatggta gcgctctcgt 5701 tggagcatcc tgagggggag atccacgtcg gtccgggaga gcccgacgac gtggcgttcg 5761 agatgttgtt tgccatctac cacatctacg gacagcgcgt taaatcctat ttgtgcac //