LOCUS JX941467 3230 bp DNA circular VRL 05-APR-2013 DEFINITION Bat hepatitis virus isolate M005, complete genome. ACCESSION JX941467 VERSION JX941467.1 KEYWORDS . SOURCE Bat hepatitis virus ORGANISM Bat hepatitis virus Viruses; Retro-transcribing viruses; Hepadnaviridae; unclassified Hepadnaviridae. REFERENCE 1 (bases 1 to 3230) AUTHORS He,B., Fan,Q., Yang,F., Hu,T., Qiu,W., Feng,Y., Li,Z., Li,Y., Zhang,F., Guo,H., Zou,X. and Tu,C. TITLE Hepatitis virus in long-fingered bats, myanmar JOURNAL Emerging Infect. Dis. 19 (4), 638-640 (2013) PUBMED 23631923 REFERENCE 2 (bases 1 to 3230) AUTHORS He,B., Li,Z., Yang,F., Zheng,J., Zou,X., Feng,Y., Guo,H., Li,Y., Su,N., Zhang,F., Fan,Q. and Tu,C. TITLE Direct Submission JOURNAL Submitted (10-OCT-2012) Virology Department, Institute of Military Veterinary, Rd. Liuying West 666, Changchun, Jilin 130122, China COMMENT ##Assembly-Data-START## Assembly Method :: SeqMan v. 7.1.0 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3230 /mol_type="genomic DNA" /country="Myanmar" /isolation_source="liver" /collected_by="Zuosheng Li" /collection_date="Nov-2008" /host="Miniopterus fuliginosus" /db_xref="taxon:1303386" /isolate="M005" /organism="Bat hepatitis virus" CDS join(2305..3230,1..1636) /codon_start=1 /protein_id="AGH10170.1" /translation="MHPFSPLCRSIPSLGGEQGDALLADPEEALPLLADEDLNHRVAA DLGLHLPTTVEPWVHKVGGLTGLYSEKPKSFNPEWKTPSFDNIHLRPDLIQYLQDRVG LNPNEKRRLRLCLPARFYPNKTKYFPLSKGIKNYYPEHTLTHFFHTSNYLWTLWEAGI TYLRESEKSASFKGQLYPWEQKQLISHGTKLVHSQPVGISSRTSTSKPLCPRLSGLGL KSGQRSMATSKGSVPRSIRARFCSPSWGPHGQPALCPRRQLNLKQPRNHCLSNPKSQG RKPDPSYSITSSTPHHNQSKEGASTNSSYAPGQSHTPPFEHALLEGEVRSSHNCWWKQ LQVADPCGDSCLSNILGLIDDWGPCYRHGDHHIRIPRTPRRITGGVFLVDKNPGNRQE SRLVVDFSQFSRGDTRVHWPKFAVPNLQSLTNLLSTNMHWLSLDVAAAFYHIPLSSAA MCHLLVGSPGLEGLPTSVPLAHQLGNNNQMFHLHRHCNRSNYLALLLLFKTYGRKLHM LAHPYIMGFRKIPMGVGLSPFLLAQFTSALASLVRRTFPHCMAFTYMDDVVLGAKSPH HLRALHTSVCSLFRDLGIVVNPTKTKWWGKHLHFMGLIISPGGTLPQDKHHQKALKLI SSLPVNKPLDWKILQRITGLLGFLAPFTTCGYPALMPLYHAITRRQALKISWPFKTFL YSLYKQPLPVIRQKRAICQVFADATPTGWGLVNHSSAWLRRGRFPRPLPIHCAELIAA CLARRWTGARVIGTDNSIVASGKRTSFPWLLGCVANWMLRGTSFCFVPSALNPADAPS RGLLGIPVAPPPLPFRPSTGRTSLFAVSPSVPPHLPDRVHFASPVPTSRDAWRPP" /product="polymerase" CDS join(2864..3230,1..833) /codon_start=1 /protein_id="AGH10171.1" /translation="MGQNWSIPNPLGFLPEHQLPNPYAPVYQDWDLNQDKDQWPQARE VSPGAYGLGFVPPHGGLTGNLPFAQEGNLTSNNPETIVYQIPKAKDESQTQVIQLPAP PRTTTNRKKGRQPTPPTPPVRVTHPHLNMPSWREKYGHLITAGGSSSKLQIPAVTAAS VTSSASSTIGDPATDMGITTSGFLVPLAGLQVGCFLLTKILEIGKSLDWWWTSLSFPG GIPVCIGQNSQSQTSSHSPTSCPPTCTGFRWMWLRRFIIYLLVLLLCAIFLLVLLDWR GFLPVCPLPTSSATTTRCSTCTATATDPITWPYCCCSKPTDGNCTCWPIPTSWALGKF LWGWASARFSWLNSLLPWLLWFAELSPTVWLLLIWMMWFWGPSLLTIFEPFIPLCALF FVIWELW" /product="surface antigen" /note="sAg; preS1/S2/S" CDS 1378..1812 /codon_start=1 /protein_id="AGH10173.1" /translation="MAARLRCQLDASGNVVLLRPLCIESGGRPVARTARHSRRAAASP VPTFYGPHVTLRRLPICAASPAGPCALRFTCANFSGCMETTMNFVTWLGIRRRTGAKM NSGHWDMYFRELLMKEWEEKGNDQRLYTYVSGGCRHKLLCTL" /product="X protein" CDS 1815..2468 /codon_start=1 /protein_id="AGH10172.1" /translation="MQLFHLCLLFCSIPTVQASELCLRWLWGMDIDPYKEFGASAQLI SFLPEDFFPPLNDLVDTLVALYEEELAGREHCTPHHTAIRALLNCWEETTRLATWVRA SVEGTTVQDAIVAYVQSTIGLRMRQQLWFHLSCLTFGQSTTIEFLISFGTWARTPQAY RPPNAPILSTLPEHTVIRRRAGGRSSSRPRRSTPSPRRRRSQSPRRRRSRTPPSNNC" /product="core antigen" /note="cAg; preC/C" ORIGIN 1 gagtcacaca cccccatttg aacatgccct cctggaggga gaagtacggt catctcataa 61 ctgctggtgg aagcagctcc aagttgcaga tccctgcggt gacagctgcc tcagtaacat 121 cctcggcctc atcgacgatt ggggaccctg ctaccgacat ggggatcacc acatcaggat 181 tcctcgtacc cctcgcagga ttacaggtgg ggtgtttctt gttgacaaaa atcctggaaa 241 taggcaagag tctagactgg tggtggactt ctctcagttt tccagggggg atacccgtgt 301 gcattggcca aaattcgcag tcccaaacct ccagtcactc accaacctct tgtccaccaa 361 catgcactgg ctttcgctgg atgtggctgc ggcgttttat catatacctc ttagttctgc 421 tgctatgtgc catcttcttg ttggttctcc tggattggag gggcttccta ccagtgtgcc 481 ccttgcccac cagctcggca acaacaacca gatgttccac ctgcaccgcc actgcaaccg 541 atccaattac ttggccttac tgttgctgtt caaaacctac ggacggaaac tgcacatgct 601 ggcccatccc tacatcatgg gctttaggaa aattcctatg ggggtgggcc tcagcccgtt 661 tctcctggct caattcactt ctgccttggc ttctttggtt cgcagaactt tcccccactg 721 tatggctttt acttatatgg atgatgtggt tctgggggcc aagtctcctc accatcttcg 781 agcccttcat acctctgtgt gctctctttt tcgtgatttg ggaattgtgg taaatcccac 841 aaaaaccaaa tggtggggta aacatctaca ttttatgggt cttatcattt ctcctggggg 901 taccctgcca caagataaac atcatcagaa agctctcaaa ttaatctctt ctcttcctgt 961 taacaagcct ttggattgga aaatccttca gcgcattacg ggtctcctgg ggtttcttgc 1021 acccttcacg acctgtggct atccagccct aatgcctttg taccatgcca ttacccggcg 1081 ccaggcctta aaaatttcct ggccctttaa gacctttctt tacagcctgt acaagcaacc 1141 tttgcccgtt atcaggcaga agcgggcaat ctgccaggtg tttgctgacg caacccccac 1201 tggttggggc ctggttaatc attcctccgc atggttgcgc aggggacggt ttccccgccc 1261 cttgcctatc cattgcgcgg aacttattgc cgcctgcctt gctcgccgct ggacgggagc 1321 tcgggttatt ggaactgaca attccattgt ggcttcggga aagcggacat ctttcccatg 1381 gctgctcggc tgcgttgcca actggatgct tcggggaacg tcgttctgct tcgtcccctc 1441 tgcattgaat ccggcggacg ccccgtcgcg cggactgctc ggcattcccg tcgcgccgcc 1501 gcctctcccg ttccgacctt ctacgggccg cacgtcactc ttcgccgtct ccccatctgt 1561 gccgcctcac ctgccggacc gtgtgcactt cgcttcacct gtgccaactt ctcgggatgc 1621 atggagacca ccatgaactt tgtaacctgg ctgggtatca gaagaaggac tggggccaaa 1681 atgaactctg gacattggga catgtacttt agggaattat taatgaagga gtgggaggag 1741 aagggtaatg atcaacgatt gtatacatat gtatctggag gctgtaggca taaattgctg 1801 tgtactctgt aaccatgcaa ctttttcacc tgtgccttct cttttgttcc atccccactg 1861 ttcaagcctc ggagctgtgc ctccgatggc tttggggtat ggacattgat ccttataaag 1921 aatttggagc ttctgctcag ttaatttcct ttttgcctga agatttcttt cccccattaa 1981 atgatttggt ggatactttg gtggctttgt atgaagagga attggcgggc agggaacatt 2041 gcacaccgca ccacaccgcc ataagggctc tactaaattg ctgggaagaa accactcgcc 2101 tcgcaacttg ggtaagagcc tctgtagaag gaaccacggt acaggatgct atagttgctt 2161 atgtacaatc aactattggg ttgcgcatga gacaacagtt atggttccac ctctcttgtc 2221 taacttttgg tcaatccact accattgaat ttcttatctc ttttgggaca tgggcacgaa 2281 ccccgcaagc atatagaccc cctaatgcac ccattctctc cactttgccg gagcataccg 2341 tcattaggag gagagcaggg ggacgctctt ctagccgacc cagaagaagc actccctctc 2401 ctcgcagacg aagatctcaa tcaccgcgtc gccgcagatc taggactcca ccttccaaca 2461 actgttgagc cttgggtgca caaggtaggg gggcttacgg gcctatattc agaaaaacct 2521 aaaagcttta atccggagtg gaaaactccc tcctttgaca atatacatct aaggccagac 2581 ttgattcagt atttacaaga cagagtagga cttaatccca atgagaaaag aagattaaga 2641 ctttgccttc ctgcccgctt ctatcctaac aagactaaat attttcctct gagtaaaggg 2701 ataaaaaact attaccctga acatacatta acccatttct tccacacttc caactatttg 2761 tggactctgt gggaagcagg catcacctat ttaagagaat cagaaaaatc agcttctttt 2821 aagggacaat tatacccctg ggaacaaaaa cagctaatta gccatgggac aaaattggtc 2881 cattcccaac ccgttgggat ttcttcccga acatcaactt ccaaaccctt atgcccccgt 2941 ttatcaggac tgggacttaa atcaggacaa agatcaatgg ccacaagcaa gggaagtgtc 3001 cccaggagca tacgggctcg gttttgttcc ccctcatggg ggcctcacgg gcaacctgcc 3061 ctttgcccaa gaaggcaact taacctcaaa caacccagaa accattgttt atcaaatccc 3121 aaaagccaag gacgaaagcc agacccaagt tattcaatta ccagctccac cccgcaccac 3181 aaccaatcga aagaaggggc gtcaaccaac tcctcctacg cccccggtca //