LOCUS JX941468 3230 bp DNA circular VRL 05-APR-2013 DEFINITION Bat hepatitis virus isolate M086, complete genome. ACCESSION JX941468 VERSION JX941468.1 KEYWORDS . SOURCE Bat hepatitis virus ORGANISM Bat hepatitis virus Viruses; Retro-transcribing viruses; Hepadnaviridae; unclassified Hepadnaviridae. REFERENCE 1 (bases 1 to 3230) AUTHORS He,B., Fan,Q., Yang,F., Hu,T., Qiu,W., Feng,Y., Li,Z., Li,Y., Zhang,F., Guo,H., Zou,X. and Tu,C. TITLE Hepatitis virus in long-fingered bats, myanmar JOURNAL Emerging Infect. Dis. 19 (4), 638-640 (2013) PUBMED 23631923 REFERENCE 2 (bases 1 to 3230) AUTHORS He,B., Li,Z., Yang,F., Zheng,J., Zou,X., Feng,Y., Guo,H., Li,Y., Su,N., Zhang,F., Fan,Q. and Tu,C. TITLE Direct Submission JOURNAL Submitted (10-OCT-2012) Virology Department, Institute of Military Veterinary, Rd. Liuying West 666, Changchun, Jilin 130122, China COMMENT ##Assembly-Data-START## Assembly Method :: SeqMan v. 7.1.0 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3230 /mol_type="genomic DNA" /country="Myanmar" /isolation_source="liver" /collected_by="Zuosheng Li" /collection_date="Nov-2008" /host="Miniopterus fuliginosus" /db_xref="taxon:1303386" /isolate="M086" /organism="Bat hepatitis virus" CDS join(2305..3230,1..1636) /codon_start=1 /protein_id="AGH10174.1" /translation="MHPFSPLCRSIPSLGGEQGDALLADPEEALPLLADEDLNHRVAA DLGLHLPTTVEPWVHKVGGLTGLYSEKPKSFNPEWKTPSFDNIHLRPDLIQYLQNRVG LNPNEKRRLRLCLPARFYPNKTKYFPLSKGIKNYYPEHTLTHFFHTSNYLWTLWEAGI TYLRESEKSASFKGQLYPWEQKQLISHGTKLVHTQPVGISSRTSTSKPLCPRLSGLGL KSGQRSMATSKGSVPGSLRARFCSPSWGPHGQSALCPRRQLNLKQPRNHCLSNPKSQG RKPDPSYSITSATPHHNQSKEGASTNSSYAPGQSHTPPFEHALLEGEVRSSHNCWWKQ LQVADPCGDSCLSNILGLIDDWGPCYRHGDHHIRIPRTPRRITGGVFLVDKNPGNRQE SRLVVDFSQFSRGDTRVHWPKFAVPNLQSLTNLLSTNMHWLSLDVAAAFYHIPLSSAA MCHLLVGSPGLEGLPTSVPLAHQLFNNNQMFHVHRHCNRSNYLALLLLFKTYGRKLHM LAHPYIMGFRKIPMGVGLSPFLLAQFTSALASLVRRTFPHCMAFTYMDDVVLGAKSPH HLRALHTSVCSLFRDLGIVVNPTKTKWWGKHLHFMGLIISPGGTLPQDKHHQKALKLI SSLPVNKPLDWKILQRITGLLGFLAPFTTCGYPALMPLYHAITRRQALKISWPFKNFL YSLYKQPLPVIRQKPAICQVFADATPTGWGLVNHSSAWLRQGRFPRPLPIHCAELIAA CLARRWTGARVIGTDNSIVASGKRTSFPWLLGCVANWMLRGTSFCFVPSALNPADAPS RGMLGIPVAPPPLPFRPSTGRTSLFAVSPSVPPHLPDRVHFASPVPTSRDAWRPP" /product="polymerase" CDS join(2864..3230,1..833) /codon_start=1 /protein_id="AGH10175.1" /translation="MGQNWSIPNPLGFLPEHQLPNPYAPVYQDWDLNQDKDQWPQARE VSPGAYGLGFVPPHGGLTGNLPFAQEGNLTSNNPETIVYQIPKAKDESQTQVIQLPAP PRTTTNRKKGRQPTPPTPPVRVTHPHLNMPSWREKYGHLITAGGSSSKLQIPAVTAAS VTSSASSTIGDPATDMGITTSGFLVPLAGLQVGCFLLTKILEIGKSLDWWWTSLSFPG GIPVCIGQNSQSQTSSHSPTSCPPTCTGFRWMWLRRFIIYLLVLLLCAIFLLVLLDWR GFLPVCPLPTSSSTTTRCSTCTATATDQITWPYCCCSKPTDGNCTCWPIPTSWALGKF LWGWASARFSWLNSLLPWLLWFAELSPTVWLLLIWMMWFWGPSLLTIFEPFIPLCALF FVIWELW" /product="surface antigen" /note="sAg; preS1/S2/S" CDS 1378..1812 /codon_start=1 /protein_id="AGH10177.1" /translation="MAARLRCQLDASGNVVLLRPLCIESGGRPVARYARHSRRAAASP VPTVHGPHVTLRRLPICAASPAGPCALRFTCANFSGCMETTMNFVTWLGTRRRTGAKL NSGHWDMYFRESLMKEWEEKGNDQRLYTYVSGGCRHKLLCTL" /product="X protein" CDS 1815..2468 /codon_start=1 /protein_id="AGH10176.1" /translation="MHLFHLCLVFCSIPTVQASELCLRWLWGMDIDPYKEFGASAQLI SFLPEDFFPPLNDLVDTLVALYEEELAGREHCTPHHTAIRALLNCWEETTRLATWVRA SVEGTTVQDAIVAYVQSTIGLRMRQQLWFHLSCLTFGQSTTIEFLISFGTWARTPQAY RPPNAPILSTLPEHTVIRRRAGGRSSSRPRRSTPSPRRRRSQSPRRRRSRTPPSNNC" /product="core antigen" /note="cAg; preC/C" ORIGIN 1 gagtcacaca cccccatttg aacatgccct cctggaggga gaagtacggt catctcataa 61 ctgctggtgg aagcagctcc aagttgcaga tccctgcggt gacagctgcc tcagtaacat 121 cctcggcctc atcgacgatt ggggaccctg ctaccgacat ggggatcacc acatcaggat 181 tcctcgtacc cctcgcagga ttacaggtgg ggtgtttctt gttgacaaaa atcctggaaa 241 taggcaagag tctagactgg tggtggactt ctctcagttt tccagggggg atacccgtgt 301 gcattggcca aaattcgcag tcccaaacct ccagtcactc accaacctct tgtccaccaa 361 catgcactgg ctttcgctgg atgtggctgc ggcgttttat catatacctc ttagttctgc 421 tgctatgtgc catcttcttg ttggttctcc tggattggag gggcttccta ccagtgtgcc 481 ccttgcccac cagctcttca acaacaacca gatgttccac gtgcaccgcc actgcaaccg 541 atcaaattac ttggccttac tgttgctgtt caaaacctac ggacggaaac tgcacatgct 601 ggcccatccc tacatcatgg gctttaggaa aattcctatg ggggtgggcc tcagcccgtt 661 tctcctggct caattcactt ctgccttggc ttctttggtt cgcagaactt tcccccactg 721 tatggctttt acttatatgg atgatgtggt tttgggggcc aagtctcctc accatcttcg 781 agcccttcat acctctgtgt gctctctttt tcgtgatttg ggaattgtgg taaatcccac 841 aaaaaccaaa tggtggggaa aacatctaca ttttatgggt cttatcattt ctcctggggg 901 tacccttcca caagataaac atcatcagaa agctcttaaa ttaatctctt ctctccctgt 961 taataagcct ttggattgga aaatccttca gcggattacg ggtctcttgg ggtttcttgc 1021 accctttacg acctgtggct atccagccct aatgcctttg taccatgcta ttaccaggcg 1081 gcaggcctta aaaatttcct ggccctttaa gaactttctt tacagcctgt acaagcaacc 1141 tttgcccgtt atcaggcaga agccggcaat ctgccaggtg tttgctgatg caacccccac 1201 tggttggggc ctggttaatc attcctccgc atggttacgc cagggacggt ttccccgccc 1261 cttgcctatc cattgcgcgg aactcattgc cgcctgcctt gctcgccgct ggacgggagc 1321 tcgggttatt ggaactgaca attccattgt tgcttcggga aagcgaacct ctttcccatg 1381 gctgctcggc tgcgttgcca actggatgct tcggggaacg tcgttctgct tcgtcccctc 1441 tgcattgaat ccggcggacg ccccgtcgcg aggtatgctc ggcattcccg tcgcgccgcc 1501 gcctctcccg ttccgaccgt ccacgggccg cacgtcactc ttcgccgtct ccccatctgt 1561 gccgcctcac ctgccggacc gtgtgcactt cgcttcacct gtgccaactt ctcgggatgc 1621 atggagacca ccatgaactt tgtaacctgg ctgggcacca gaagaaggac gggagccaaa 1681 ctgaactctg gacattggga catgtacttt agggaatcat taatgaaaga atgggaggag 1741 aagggtaatg atcaacgatt gtatacatat gtatctggag gctgtaggca taaattgctg 1801 tgtactctgt aaccatgcat ctttttcacc tgtgcctagt cttttgttcc atccccactg 1861 ttcaagcctc ggagctgtgc ctccgatggc tttggggtat ggacattgat ccttataaag 1921 aatttggagc ttctgctcaa ttgatttcct ttttgcctga agatttcttt cccccattaa 1981 atgatttggt ggatactttg gtggctttgt atgaagagga attggcggga agggaacatt 2041 gcacaccgca ccacaccgcc atacgggccc ttctaaattg ctgggaagaa accactcgcc 2101 ttgcaacttg ggtaagagcc tctgtagaag ggaccacggt gcaggatgct atagttgctt 2161 atgtacaatc aaccattgga ttgcgcatga gacaacaatt atggttccac ctctcttgtc 2221 tgacttttgg tcaatccact accattgaat ttcttatctc ttttgggacc tgggcaagaa 2281 ccccgcaagc atatagaccc cctaatgcac ccattctctc cactttgccg gagcataccg 2341 tcattaggag gagagcaggg ggacgctctt ctagcagacc cagaagaagc actccctctc 2401 ctcgcagacg aagatctcaa tcaccgcgtc gccgcagatc taggactcca ccttccaaca 2461 actgttgagc cttgggtgca caaggtaggg gggcttacgg gcctatattc agagaaaccc 2521 aaaagcttta atccggagtg gaaaactccc tcctttgaca atatacatct aagaccagac 2581 ttgattcagt atttacaaaa cagagtggga cttaatccta atgagaaaag aagattaaga 2641 ctctgtcttc ctgcccgctt ctatcctaac aagactaaat attttcctct gagtaaaggg 2701 ataaaaaact attaccctga acatacatta acccatttct tccacacttc caattatttg 2761 tggactttgt gggaagcagg catcacttat ttgagggaat ccgaaaaatc agcttctttt 2821 aagggacaat tatacccctg ggaacaaaaa cagctaatta gccatgggac aaaattggtc 2881 catacccaac ccgttgggat ttcttcccga acatcaactt ccaaaccctt atgcccccgt 2941 ttatcaggat tgggacttaa atcaggacaa agatcaatgg ccacaagcaa gggaagtgtc 3001 cccgggagct tacgggctcg gttttgttcc ccctcatggg ggcctcacgg gcaatctgcc 3061 ctttgcccaa gaaggcaact taacctcaaa caacccagaa accattgttt atcaaatccc 3121 aaaagccaag gacgaaagcc agacccaagt tattcaatta ccagcgccac cccgcaccac 3181 aaccaatcga aagaaggggc gtcaaccaac tcctcctacg cccccggtca //