LOCUS KF939650 3278 bp DNA circular VRL 07-JAN-2015 DEFINITION Bat hepatitis virus isolate PEPR13, complete sequence. ACCESSION KF939650 VERSION KF939650.1 KEYWORDS . SOURCE Bat hepatitis virus ORGANISM Bat hepatitis virus Viruses; Retro-transcribing viruses; Hepadnaviridae; unclassified Hepadnaviridae. REFERENCE 1 (bases 1 to 3278) AUTHORS He,B., Hu,T. and Tu,C. TITLE Genomic characterization of novel bat hepatitis viruses in Yunnan, China JOURNAL Unpublished REFERENCE 2 (bases 1 to 3278) AUTHORS He,B., Hu,T. and Tu,C. TITLE Direct Submission JOURNAL Submitted (06-DEC-2013) Virology department, Institute of Military Veterinary, Rd. Liuying West 666, Changchun, Jilin 130122, China COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3278 /mol_type="genomic DNA" /country="China: Yunnan" /isolation_source="liver" /collected_by="Tingsong Hu" /identified_by="Biao He" /collection_date="Jun-2011" /host="Hipposideros pomona" /db_xref="taxon:1303386" /isolate="PEPR13" /organism="Bat hepatitis virus" CDS join(2314..3278,1..1642) /codon_start=1 /protein_id="AIW47291.1" /translation="MHPFSQLFQSIQSLEEGEVEQLLGPPEDALPLLADANLNHRVAE ELLLQLPLHAEIWVHKAGGLTGLYSEKPKIFNPEWKTPSFPNIHLRHDLCEHIDSRIG LTKGEKRRFKLCLPARFFPNKTKYFPLHKAIKNYYPDHTLTHFFHTAHYLWTLWESGV TYLRTSQSSASFNGQSYPWEQKHHTHGKQQISSQSLRLPPRSPATNSPKFRGLGKILG PKSAKGSLAPSIGTLSGSLGTKSSPSSWGSTWNRREFSGSPYQYQKYRRNNQNYYRQK TTNNYHKNKQDQSIYWNNANKTNITSHTSIQSPKGASTNAPDITSKTDSSTSQYEQDL ETEVRQPDNSCPWLFFNHSPACGRYCLRQCLLLLSDWGPCHRHGDHLIRTPRTPRRIS GGVFLVDKNPNNRTESRLVVDFSQFSRGNTRVQWPKFAVPNLQALTNLLSSSRSWLSV DVSAEFYHIPLNPAAMPHLLVGSPGLEGLASCLSPKSTDNNHQEMQHLHNLCGRRNLL ALLLLFKTYRRKQTLLAHSFFKGFRKNPTGVGLSPILLAQFPSALASVVRRTFPHCLA FTYMDDVVLGATTPPHLESVYASVCSLFSDLGIVLNPDKTKWWGKHLQFMGLLITPSG TLPQSKHQKRAIQLLKALPCYTIFDWKILQRLTGLLGFLAPFTACGYPALMPLYHAIT QKNGFEFSPAYKGFLLRLYSRPLHVVRQRSSTCQVFADATPTGWGLVNHQLALYKSGR FPRPLPIHHAELIAAILARCWSGAKLLGTDNTIVCSHKFTHFPWLLGCTANWILRETS FCYVPSELNPADAPSRGFLGIRTAPPPLRFRPSTGRTSLFVVSPPAPTRMPDRVSFVS PVQKRLSTWRPP" /product="polymerase" CDS join(2870..3278,1..839) /codon_start=1 /protein_id="AIW47292.1" /translation="MGNNRSVPNPFGFLPDHQLQIAPNSEVWGKSWDQNQQKDPWPQA LEPSLGAWGPSLVPPHGGLLGTGENSQGVLINIKNTGETTKTIIGRKPQTIITKTSKT NPSTGITPTKQTSPPTPASNRQKGRQPTPPTLPAKQTHPHLNMNKTWRQRYASLITPV PGSSSTILRPAEDTASDSVFYYSPIGDPAIDMGITSSELLAPLVGFQVVFFLWTKILT IGQSLDSWWTSLSFLGGTPECNGLNLLSPTCKHSPTSCPAAGPGFRWMCLRSFIIYLL ILLQCLICLLALLDWRGLLPVCPLNPLTTTTKRCNTCTISADDATSWPSCCCSKPTGG NRPCWPIPSSRALGKIPRGLASRRFSWLNSLVPWLQWFVELSPTAWLLLIWMMWYWGP RLLRTLSPFMPLFVLFSLIWGSF" /product="surface antigen" /note="sAg; preS1/S2/S" CDS 1384..1812 /codon_start=1 /protein_id="AIW47293.1" /translation="MAARLYCELDPSRDVLLLRPFGAQPGGRPVSRFPGDSNGSTAST VPPVHRQDFALRRLPACAYSNAGPCVLRFTCAEAAVNMETTMTNFVTWHTARQRGTVT QTLNSWQWYFGQLLMNQWEETGWDDRIIAYVLGGCRHKLR" /product="X protein" CDS 1824..2477 /codon_start=1 /protein_id="AIW47294.1" /translation="MYLFHLCLLFCSYPTVQASKLCLGWLWGMDIDPYKEFGTSQQLI NFLPVDFFPSLSDLVETIIALYEEDLTGREHCSPHHTALRALINCWEESSSFVTWVRS SVEGTPIQDAIVTHVMNTFGLKLRQQLWFHLSCLTFGDATVLEFLVSFGTWIRTPQPY RPPNAPILSTLPEHTVVRRRGGRAATRSPRRRTPSPRRRKSKSPRRRRTPSPTAPAC" /product="core antigen" /note="cAg; preC1/C" ORIGIN 1 aacagactca tccacatctc aatatgaaca agacttggag acagaggtac gccagcctga 61 taactcctgt ccctggctct tcttcaacca ttctccggcc tgcggaagat actgcctcag 121 acagtgtctt ttactactct ccgattgggg accctgccat cgacatgggg atcacctcat 181 cagaactcct cgcacccctc gtcggatttc aggtggtgtt tttcttgtgg acaaaaatcc 241 taacaatagg acagagtcta gactcgtggt ggacttctct cagttttcta gggggaacac 301 ccgagtgcaa tggcctaaat ttgctgtccc caacctgcaa gcactcacca acctcttgtc 361 cagcagccgg tcctggcttt cggtggatgt gtctgcggag ttttatcata tacctcttaa 421 tcctgctgca atgcctcatc tgcttgttgg ctctcctgga ttggaggggc ttgcttcctg 481 tctgtcccct aaatccactg acaacaacca ccaagagatg caacacctgc acaatctctg 541 cggacgacgc aacctcctgg ccctcctgtt gttgttcaaa acctacagga ggaaacagac 601 cctgctggcc cattccttct tcaagggctt taggaaaaat cccacggggg ttggcctctc 661 gccgattctc ctggctcaat tccctagtgc cttggcttca gtggttcgta gaactttccc 721 ccactgcctg gcttttactt atatggatga tgtggtattg ggggccacga ctcctccgca 781 ccttgagtcc gtttatgcct ctgtttgttc tcttttctct gatctgggga tcgttttaaa 841 cccagacaaa acaaaatggt ggggcaaaca tctacaattt atggggttac ttataactcc 901 ctcggggacc ctacctcaat caaagcacca gaaacgggca atccaactat taaaagccct 961 tccttgctac acaatttttg attggaaaat cctgcagcgt ctcacgggac ttttgggctt 1021 tctcgcccct ttcactgcct gtgggtaccc tgcacttatg ccattgtatc atgccataac 1081 tcagaaaaac gggtttgaat tctctccagc atacaaaggg tttcttcttc gattgtacag 1141 tcgacctttg cacgttgttc gacaacggag ctcgacttgc caggtgtttg ctgacgcaac 1201 ccccactggc tggggcctgg ttaatcatca actcgcattg tataaatccg gtcgatttcc 1261 acgaccgctt ccaattcatc acgctgagtt gattgcagcc attttagctc gctgctggtc 1321 aggagctaaa cttttgggaa ctgacaacac cattgtgtgc tcacataaat tcactcattt 1381 cccatggctg ctcggctgta ctgcgaactg gatccttcga gagacgtcct tctgctacgt 1441 cccttcggag ctcaacccgg cggacgcccc gtctcgcggt ttcctgggga ttcgaacggc 1501 tccaccgcct ctacggttcc gcccgtccac cggcaggact tcgctcttcg tcgtctcccc 1561 gcctgcgcct actcgaatgc cggaccgtgt gtccttcgtt tcacctgtgc agaagcggct 1621 gtcaacatgg agaccaccat gacgaacttt gtaacttggc atactgcccg gcaacgtggc 1681 accgtaacac aaactttaaa ctcttggcaa tggtactttg ggcaattatt aatgaatcaa 1741 tgggaggaga caggctggga tgatagaatt attgcatatg tattaggagg ctgtaggcat 1801 aaattgcggt gaaggttgtc accatgtatc tttttcacct gtgcctgctc ttttgttcct 1861 accccactgt tcaagcctcc aagctgtgcc ttgggtggct ttggggtatg gatattgatc 1921 cttataaaga atttggaact tcacaacaac tgataaactt cttgcctgtt gatttcttcc 1981 cttcgctctc tgatttggtg gaaaccatca tagctctcta cgaagaagac ctcacaggta 2041 gggagcattg ctctccccat cataccgcac ttagggcgct tataaattgc tgggaagaat 2101 catctagctt tgttacttgg gtacgttcct ctgtggaagg aactcctatt caggatgcaa 2161 tcgtaactca tgtaatgaac acttttggac taaaacttag acaacaattg tggtttcatc 2221 tctcctgttt aacctttggg gatgctacag tattagaatt tttggtatct tttgggactt 2281 ggataagaac acctcaacca tacagaccac cgaatgcacc cattctctca actcttccag 2341 agcatacagt cgttagaaga aggggaggta gagcagctac taggtccccc agaagacgca 2401 ctccctctcc tcgcagacgc aaatctaaat caccgcgtcg cagaagaact ccttctccaa 2461 ctgcccctgc atgctgaaat ttgggtacat aaagccgggg gcctcacagg tctttattca 2521 gagaaaccaa aaatttttaa tccagaatgg aaaactcctt ctttcccaaa catacatctt 2581 cgtcatgacc tttgcgagca tattgattcc agaattggcc taacaaaggg agagaagaga 2641 agatttaaat tatgtcttcc tgctagattc ttcccaaata aaactaaata tttcccatta 2701 cataaggcca taaaaaatta ttatcccgat cacacactca ctcacttttt tcatactgct 2761 cactatctgt ggacactctg ggaatcaggg gtcacttatc taagaacttc tcagtcatcc 2821 gcctccttta acggacaatc ttacccctgg gaacaaaaac atcatactca tgggaaacaa 2881 cagatcagtt cccaatccct tcggcttcct cccagatcac cagctacaaa tagccccaaa 2941 ttcagaggtt tggggaaaat cttgggacca aaatcagcaa aaggatcctt ggccccaagc 3001 attggaaccc tctctgggag cctggggacc aagtctagtc cctcctcatg ggggtctact 3061 tggaaccgga gagaattctc agggagtcct tatcaatatc aaaaatacag gagaaacaac 3121 caaaactatt ataggcagaa aaccacaaac aattatcaca aaaacaagca agaccaatcc 3181 atctactgga ataacgccaa caaaacaaac atcacctccc acaccagcat ccaatcgcca 3241 aaaggggcgt caaccaacgc ccccgacatt accagcaa //