LOCUS HQ595343 7625 bp ss-RNA linear VRL 16-AUG-2011 DEFINITION Bat picornavirus 2 strain SK17F, complete genome. ACCESSION HQ595343 VERSION HQ595343.1 KEYWORDS . SOURCE Bat picornavirus 2 ORGANISM Bat picornavirus 2 Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae. REFERENCE 1 (bases 1 to 7625) AUTHORS Lau,S.K., Woo,P.C., Lai,K.K., Huang,Y., Yip,C.C., Shek,C.T., Lee,P., Lam,C.S., Chan,K.H. and Yuen,K.Y. TITLE Complete genome analysis of three novel picornaviruses from diverse bat species JOURNAL J. Virol. 85 (17), 8819-8828 (2011) PUBMED 21697464 REFERENCE 2 (bases 1 to 7625) AUTHORS Lau,S.K., Woo,P.C., Lai,K.K., Huang,Y., Yip,C.C., Shek,C.T., Lee,P., Lam,C.S., Chan,K.H. and Yuen,K.Y. TITLE Direct Submission JOURNAL Submitted (08-NOV-2010) Microbiology, The University of Hong Kong, University Pathology Building, Queen Mary Hospital, Pokfulam Road, Hong Kong, China FEATURES Location/Qualifiers source 1..7625 /mol_type="genomic RNA" /country="Hong Kong" /collection_date="01-Sep-2005" /host="Miniopterus magnater" /db_xref="taxon:1074864" /strain="SK17F" /organism="Bat picornavirus 2" 5'UTR 1..331 CDS 332..7435 /codon_start=1 /protein_id="AEM23660.1" /translation="MCFFFHTKTNDVSPMTKKTPVERLMSPGPKCLSMGEELLIVYDY YMLFIKKNPKVTPRIDRPANTDYKRTTNCGAAASRTSTESHKNQSATAGGNITQINYY GSDYASAHGAAQTRLDPDSLARPLANVADLAGPALKSPTVEELGYSDRIMQITSGNST ITTQEAVNAVVAYGVWPSIDEGVGQAIDMQTVPGPSCERFYTFSSQSWTTTTVGYGLK LPLALTDMGVFGQNCQYHFLCHSGFCVHVQVNASKFHQGLLLVCAIPDCQVQGRLEGD SVTGLYTLESKDFEDYPAPQLTLYPHQMINLRTNNSATLILPYVSASPAESPLTHNIW TVYLVPVVPLEYAAGASTSLPITVSVAPMSCSFSGLRNQVPFHQGIPVFEVPGSGQFM TTLRNSGYPCLPDYEETPSHHIPGKVVNLLEVMSVDTFCNCSDSDTQTKMYFTLNVNI TEDKPIRAWDMDLASKLFTTTYIGRVTKWFSQHRGSIRLTFLYTGSAMSTGKLLIAYT PPGGSEPKTRKDAMLGTHVVWDIGLQSSITMVVPWVSQTVYRYNHPKEENALTYRGFV TVFYQTALIVPADTPHTASVCVLASVTSDFVMRVPTDSAYYQGIGDDLGRLVDNEVAK AIEGTRAPAITGTSVPPTLSVQVGEAAALTAPETGATAATEPSSVLETRNLSITYSRD EMSIENFFSKYAFFFKMDFSPDNNATRHFVRNLRFDDNDNTQRAVISKYNMFTYFRAA YDIVIVVSMNGSSGPKNGLPMVQVMFCPPGCPVPSSDEGNEWYLPTTPSVYQQVGHAP ISLRIPYMGPASSYTTTYDGYEDFNLNNREYGVFPGNEMGHLAVRLLSRAAGASQLDT WIRVSCFARPVNISAYCPRPIVTSKPESRAKVTRGRVVYVEDGDTSVPRVLNMGPKHK NGRRLAVTSCPPHLMKYFEDCYQCLNEDDGFSFHCFPLNSRECLIPGHLYVADLKFQR TNGAYPHEIPYRKKWADWTMDLVCLQLDRDFFETRVFLCKRQCCKNTWTVCDTTEHNV AIRCGDATFQKDVWVDGPITSSGHWQRNLLRVEIPIRPGHCGSPLICKHGICGMASVS DEQSVSWFTCVWMADEYEDEDLYPFAEEQGPDADEQGLRDIMNNVAKELGHSFGASTM DGVADVIEDAVKKYTFDKANAQYTYVKLVLKWLVKTITAVTMIARSDPNHRIEVASGL GVIFGIDLLTTEPFEWLKSKVLDCLGYKSASEQGMNDFVDWIKDFNAACTAAKGLEWI GQKIMQFIDWLKTLFKKENPARTKFMQQLEDLPLMMKHIDSISAARGKYPESEIRKVC EAIVDLKRGADLFGVERNTATTQIVKYYQKAQNILSSMTKGRTEPVAVLIHGAPGLGK SLVTEVVGRQLSRYYGAGRPYSLPPDPKHFDGYAQQPVVIMDDLGQNPDGEDCKLLCQ MVSSTEFITPMASLDDKGMPFTSDFVLASTNLSALKPPTVSEPNAIRRRFFIDAAIEP SKDYLKPSGHLDADTSLTQCDHAAVNFAKCCPLICGKALVLKDLRTGVKYSVDEVVTK LKRERETRHACGSKLDAIFQGPYETCPSYESWLQTQYDRMPPVLKTFEEQKNEGILRP TPKEVIDLIRAVPTQEVIDYCKSQGWLLPDDVVSIRIEKDINKMVTNITKGLSIIASL CAITGFVYLMYTVFAKGQGAYSGQPTTPLKKPELRRVAKTQGPDMEFVNKLFKQSIFS VKTKKGWFSGLGLHTQWLLLPKHSEPEDVIEMNDVEYKCLDIVILENSQGSLELVAVK IDRPVNFRDIRKYIPEHFQRESGCFLAVDNPHYERMFAPVGTVSMFGFLNLSYKATYN TCHYHYPTRSGQCGGVICKAGKIIAMHIGGDGISGYGAILTKRIVAAIEQGAITKMEE TQTTPINISTKTKLHPSVFFDVFPGEKEPAALHPKDKRLEVDLEQAMFSKYKGNCSVI RPTPNMLVAVDHYVSQIQPIMPTNLIEPLSLEEVVYGIENLDGLDLATSAGYPYVVKG VRKRDLIPPKGEPLTKLVSALDLHGYGQPFVTYIKDELRPKKKIALGKSRLIECSSLN DTILMKRVYGRLFQTFHANPGTITGSAVGCNPDVDWSKFYAEMAGRPLIAFDYSNFDA SLSPVWFECLKLVLSKLGYRDDPKICDKINADVLPSWIIDHVTFSSHLYKNKYYEVEG GMPSGCSGTSIFNSIINNIIIRTLVLDVYKGIDLDQLRMVAYGDDIVATYPFQLDAAA LAEAGKVYGLQMTPPDKDSDFNDTTWDNVTFLKRTFVPDEEFPFLIHPCFPMKEIYES IRWSRSAAATEEHVQSLCYLAWHNGRSVYEDFIEKIRTVPVGRALKLPSYSVLRQQWL DQF" /product="polyprotein" mat_peptide 332..550 /product="L" mat_peptide 551..745 /product="VP4" mat_peptide 746..1465 /product="VP2" mat_peptide 1466..2155 /product="VP3" mat_peptide 2156..3037 /product="VP1" mat_peptide 3038..3703 /product="2A" /note="alternate cleavage site" mat_peptide 3038..3682 /product="2A" mat_peptide 3683..4042 /product="2B" mat_peptide 3704..4042 /product="2B" /note="alternate cleavage site" mat_peptide 4043..5047 /product="2C" mat_peptide 5048..5389 /product="3A" mat_peptide 5390..5458 /product="3B" mat_peptide 5459..6007 /product="3C" mat_peptide 6008..7432 /product="3D" 3'UTR 7436..7609 ORIGIN 1 gcaagtggaa acgcgatttt atatgtggct ggccaccacg gaataacggc aattgtttac 61 atgtgggaag tgcaacctcc ctagccgata gcccttgacc gggtgtgtag gataggaaag 121 gtgcccactg tgagcgacag gttatggtag agtggatacc tagccagggg caatgggact 181 gctttgcata tccctaatga agcatcgaga gttctctgct cattacccgg tgacggttgt 241 gtgggggggg ccccacacac tagatccata ctgcctgata gggtcgcggc tggccgacca 301 taacctgtat agtcagttga ttttaaccaa gatgtgtttc tttttccata caaagactaa 361 tgatgttagc cctatgacca agaagactcc cgttgaacgc ctcatgtctc cagggcccaa 421 atgcctgagc atgggagaag agctactcat agtttatgac tattacatgc tctttatcaa 481 gaagaacccg aaggtgaccc ccagaattga tcgccctgca aacactgatt acaagaggac 541 taccaattgt ggggctgctg cctctcggac ttccactgaa tcgcataaga accagagtgc 601 aactgctgga ggcaacataa cccagataaa ttactatggt tcggactatg cgtcggctca 661 cggtgctgct caaacccgtt tggatccgga ttctttggca cgacccttgg ctaatgttgc 721 tgatttggct ggccctgctc tcaaatcccc cactgttgag gaattaggat attctgaccg 781 gatcatgcaa atcacatctg gaaactcgac catcacgacc caggaagccg ttaatgcagt 841 ggttgcctac ggagtctggc cctcgattga tgagggtgtt ggccaggcta tagacatgca 901 aacagtccct gggccatcat gcgagaggtt ctacaccttt tcaagccaat cttggaccac 961 aactacagtt ggctacggac ttaagcttcc tttagctctt actgatatgg gtgtgtttgg 1021 tcagaactgc cagtaccact ttctttgtca ttccgggttt tgtgttcatg ttcaggttaa 1081 tgcctctaaa ttccaccagg gcctactact ggtgtgtgcc atcccggact gtcaggtgca 1141 gggaaggctt gaaggagatt ctgttaccgg tttgtatact ttggaaagta aagattttga 1201 agattacccg gcacctcagt tgacccttta tcctcatcag atgataaatt taagaacaaa 1261 taattcagca actttgattt tgccctatgt gtcagcttca cctgcagaat caccattgac 1321 ccataatata tggacagttt atttagtacc tgttgtgcca ttggagtatg ctgctggggc 1381 atccacaagc ttacccatta cagtgtctgt tgcccctatg tcttgttctt ttagtggatt 1441 gcgtaatcag gtgcctttcc atcaagggat tcctgtcttt gaggtacctg gctctggaca 1501 atttatgact acattaagga attccggtta cccatgcctc ccggattatg aagagacccc 1561 ctcacaccat atccctggta aggttgtcaa ccttttggag gtcatgtctg ttgacacctt 1621 ctgcaactgc tcagattcag atacacagac aaaaatgtac ttcactttaa atgtgaatat 1681 aaccgaggac aagcccatta gagcctggga tatggatcta gcctcgaagt tatttaccac 1741 cacctatata ggtcgggtga cgaaatggtt ctcccagcat agaggctcca ttagattgac 1801 attcttgtat acaggctcgg ccatgtctac aggtaaatta cttattgcat ataccccacc 1861 aggtggctct gagcctaaga caaggaaaga tgccatgcta ggaacacatg ttgtctggga 1921 cattgggttg caatcatcaa taacaatggt agtgccatgg gtctcccaaa cagtttatcg 1981 gtataaccac cccaaggagg aaaatgcatt aacatatagg ggatttgtta ctgtttttta 2041 ccaaacagca cttattgtac cagctgatac tcctcataca gccagcgtgt gtgtgctggc 2101 atctgttaca tcagattttg ttatgcgtgt acctactgat tctgcctatt atcagggtat 2161 tggtgatgat ttgggcagac ttgtggataa tgaggtggca aaagcaatcg aaggcacaag 2221 agccccagca attacgggga cgtcagtgcc cccaacccta tctgtacaag taggtgaggc 2281 agccgccctg accgcacctg agacaggtgc tactgctgct acagaaccat ctagtgtgct 2341 tgagacccga aatttgtcca tcacctatag tagagatgaa atgtctatag agaatttctt 2401 ttccaagtat gccttctttt ttaaaatgga tttttcgcca gataataatg ctacccgtca 2461 ttttgttaga aatttaaggt ttgatgataa tgacaatacc cagcgggctg ttatatccaa 2521 gtataatatg tttacatatt ttagagctgc ttatgatata gtaattgttg tgtctatgaa 2581 tggaagttca ggaccaaaga atggattacc catggttcaa gtaatgtttt gccccccagg 2641 gtgtcctgtt ccatcttctg atgagggtaa tgagtggtat ctacccacca ccccttctgt 2701 ctatcaacag gtaggtcatg cccccataag cttgaggatt ccttatatgg ggcctgcatc 2761 atcttataca acaacttatg atggatatga agattttaat ctcaataata gggagtacgg 2821 tgtgtttcca gggaatgaaa tgggtcattt ggcagttaga ctattatccc gggcggcagg 2881 ggcatcacag ttggacacct ggattagggt ttcatgtttt gctaggccag tgaatatctc 2941 tgcctactgc ccccgtccca ttgttacatc aaagcctgaa tctagagcta aagttacccg 3001 tggacgtgtt gtgtatgtgg aggacggtga cacgagtgtt ccacgggtgt taaatatggg 3061 tcccaaacat aagaatggaa gacgccttgc tgtaacatca tgcccaccac atcttatgaa 3121 gtattttgag gattgttatc aatgtttgaa tgaagatgat ggtttttcct ttcattgctt 3181 tcctttgaat tccagagagt gcttgattcc tggccatctt tatgttgctg atcttaagtt 3241 tcagaggaca aatggtgctt atccccatga gattccctac aggaagaagt gggctgattg 3301 gacaatggat ttagtttgct tacagttaga tcgtgatttt ttcgagacca gggtgttttt 3361 gtgcaagagg caatgctgta agaatacatg gactgtctgt gatacaactg agcataatgt 3421 tgcaatccgt tgtggagatg caacctttca aaaggatgtc tgggttgatg gtcctatcac 3481 ctctagtgga cattggcaaa gaaatttgct gcgcgttgag atccccatcc gtcctggcca 3541 ttgtggtagt cccttgattt gtaagcatgg tatttgtggt atggcaagtg tgtctgatga 3601 gcaatctgtt tcttggttta cgtgtgtgtg gatggctgat gaatatgaag atgaagatct 3661 gtacccgttt gctgaagagc aaggcccaga tgctgatgaa caaggtttaa gggacattat 3721 gaataatgtt gcaaaagaac tgggccactc atttggagcc tccacaatgg atggcgttgc 3781 tgatgtgata gaggatgctg taaagaaata tacttttgat aaagctaatg cccagtacac 3841 ctatgtgaag ctagttctta aatggttggt caagaccatc actgctgtta ccatgattgc 3901 tcggtctgat ccgaaccatc gcattgaagt tgcatctggc ctaggcgtta tttttggtat 3961 agatctctta accacagaac cttttgagtg gctcaaatca aaagtgttgg actgcctggg 4021 ttataaaagt gcaagtgaac aaggtatgaa tgattttgtt gactggataa aggattttaa 4081 tgctgcttgc actgcagcaa aaggacttga gtggatagga cagaagatca tgcagtttat 4141 tgattggctc aaaacattat ttaagaaaga gaacccagcc aggacaaagt tcatgcaaca 4201 acttgaagat ctaccactta tgatgaagca tatagattcc atttctgctg cacgtggcaa 4261 gtatccagag tctgaaatta gaaaggtttg tgaggccatt gttgacttga agagaggtgc 4321 agatttgttt ggggttgaac gcaatacagc cacaacacaa atagttaagt actatcaaaa 4381 ggcacagaac attctcagtt ctatgactaa gggccgtact gaacctgtgg cagttttaat 4441 tcatggggct cctgggttag gtaagtcatt agtgacagaa gttgtcggac ggcaattgtc 4501 acgctactat ggagccggac ggccttactc attgccacct gatcccaagc attttgatgg 4561 gtatgctcaa cagcccgttg tgatcatgga tgacttgggt cagaacccag atggggaaga 4621 ttgtaaactg ctgtgtcaaa tggtatcttc aacagaattc ataactccca tggcctcctt 4681 agacgataag ggaatgcctt ttacatctga ttttgtgctt gcgtcaacca atctttcagc 4741 ccttaaacca cccactgtgt ctgagcccaa tgccattcgg cggcgattct ttattgatgc 4801 ggccatcgaa ccctcaaaag attatctcaa accaagtggg catcttgatg cagacacctc 4861 gcttacccag tgtgatcatg ctgctgtgaa ttttgcaaaa tgttgtcctc ttatttgtgg 4921 aaaggcttta gttttgaaag atcttagaac tggtgttaag tattctgtag atgaggtagt 4981 aacaaaactt aagagagaaa gggaaacccg ccatgcctgt gggagcaaac ttgatgcaat 5041 ttttcaagga ccgtatgaaa catgcccctc ctatgagtca tggctccaaa cacagtatga 5101 taggatgccg cctgtgctaa agacctttga agaacagaag aatgaaggca tcctgagacc 5161 aaccccaaaa gaggtcattg atttgattcg tgccgtccca acacaagaag taatagatta 5221 ttgcaaatca cagggttggc ttcttccaga tgatgtggtc tctatacgta tagagaaaga 5281 tataaataaa atggttacta atattaccaa gggcttgtct attattgctt cactttgtgc 5341 cattacaggg tttgtttatt taatgtacac tgtttttgca aagggtcagg gtgcatactc 5401 tggacaacca acaacaccat taaagaaacc agagttgagg agggtggcca aaactcaggg 5461 accggatatg gagtttgtaa ataaattatt taagcagagc attttttctg ttaagactaa 5521 gaagggctgg ttttctggac ttggcttgca tactcagtgg cttttgcttc cgaaacattc 5581 tgaacccgag gatgttatag aaatgaatga tgtagagtat aagtgtttag atatagtgat 5641 tttagaaaat agtcagggta gtttagagtt agttgcagtt aagatagata ggcctgttaa 5701 ttttagagat attcgtaagt atattccaga gcattttcaa agagagtctg ggtgttttct 5761 tgctgttgat aacccccatt atgaaaggat gtttgcacct gttggaactg tttctatgtt 5821 tggattttta aatttgtcct ataaagccac ctataatacc tgccattatc attatccaac 5881 aagatcaggt caatgtggag gtgtgatatg caaggctggt aagatcatag ccatgcatat 5941 tgggggagat ggtatcagcg gctatggcgc cattttaaca aaaaggattg tggcagcaat 6001 tgagcaaggt gccataacta agatggagga aactcagact acccctatta atatatctac 6061 taaaaccaaa ttgcacccaa gtgttttctt tgatgtcttt ccaggtgaga aggaacccgc 6121 tgctttacat cccaaggata agagattgga agtggatctt gaacaggcta tgttttctaa 6181 atataaaggc aattgcagtg tgatacggcc aactccaaat atgttagttg ctgtagacca 6241 ttatgtttca caaattcaac caatcatgcc aactaatttg atagagcctc tatctttgga 6301 ggaagtggtt tatggcattg agaatcttga tggattggac ttggccacct cagcaggata 6361 tccgtatgtt gtgaagggag tgagaaagag agatctgatt ccacccaagg gtgagccctt 6421 aacaaagcta gtgtcagcac ttgatttgca tggatacggc caaccatttg taacctatat 6481 aaaagatgag cttagaccaa agaaaaagat agccctggga aagtctaggc ttattgaatg 6541 ttcctcactg aatgatacca tcctgatgaa aagagtttat ggccgtttat tccaaacatt 6601 tcatgcaaat ccaggaacca ttacaggatc agctgtaggg tgtaacccag atgtggattg 6661 gtcaaagttt tatgcggaga tggctggaag acctcttata gcatttgatt attcaaattt 6721 tgatgcatca ttatccccag tttggtttga atgtttaaaa ttagttttga gtaagttagg 6781 ttatagggat gatcccaaga tatgtgataa gattaatgca gatgtgcttc cctcctggat 6841 tattgatcat gtgaccttta gttctcattt atataagaat aagtattatg aagtggaagg 6901 agggatgcca tctggctgct ctgggacatc aatttttaat tccattatta ataatataat 6961 tattaggact ttagtgttag atgtttataa aggaatagat ttggatcagt tgcgcatggt 7021 ggcatatggt gatgatatcg tagctaccta tcccttccag ttggatgctg ccgctttggc 7081 tgaggccggc aaagtttatg gattgcagat gactcctcct gataaagatt cagatttcaa 7141 tgataccacc tgggacaatg taacctttct aaagagaaca ttcgtccctg atgaggagtt 7201 cccttttctg atccatccct gctttccaat gaaggagatt tacgagtcca tccgttggtc 7261 tcgttctgct gcagcaactg aagaacacgt ccagtcgttg tgttatcttg cctggcacaa 7321 tggccgttct gtgtatgagg attttattga gaaaattcgc actgtgcctg ttggtagagc 7381 cttgaaactc ccttcgtaca gtgtgctgcg ccagcaatgg cttgatcagt tttaggtagt 7441 caattgttag tgtagctttt aggcttaagt ttagttgtta agtttaagca gtttgttata 7501 gtaagttaag tttaggttta agttagtata ataagcaagt gtaccccttt cctttcaatc 7561 acaatcagcc cagggggggt attttaaatt ttatgtttga ttgatgcata aaaaaaaaaa 7621 aaaaa //