LOCUS AF311299 2007 bp DNA circular VRL 09-FEB-2001 DEFINITION Beak and feather disease virus natural-host Trichoglossus haematodus, complete genome. ACCESSION AF311299 VERSION AF311299.1 KEYWORDS . SOURCE Beak and feather disease virus ORGANISM Beak and feather disease virus Viruses; ssDNA viruses; Circoviridae; Circovirus. REFERENCE 1 (bases 1 to 2007) AUTHORS Bassami,M.R. TITLE Genetic studies of beak and feather disease virus JOURNAL Thesis (2000) Murdoch University, Perth, Western Australia, Australia REFERENCE 2 (bases 1 to 2007) AUTHORS Bassami,M.R., Ypelaar,I., Berryman,D., Wilcox,G.E. and Raidal,S.R. TITLE Genetic diversity of beak and feather disease virus detected in psittacine species in Australia JOURNAL Virology 279 (2), 392-400 (2001) PUBMED 11162795 REFERENCE 3 (bases 1 to 2007) AUTHORS Bassami,M.R., Ypelaar,I.B., Wilcox,G.E. and Raidal,S.R. TITLE Direct Submission JOURNAL Submitted (05-OCT-2000) Division of Veterinary and Biomedical Sciences, Murdoch University, South Street, Perth, Western Australia 6150, Australia FEATURES Location/Qualifiers source 1..2007 /mol_type="genomic DNA" /db_xref="taxon:77856" /country="Australia: Victoria" /organism="Beak and feather disease virus" /host="Trichoglossus haematodus" /note="isolated from feather" stem_loop join(1990..2007,1..12) /note="similar to the stem-loop involved in replication of porcine circoviruses, plant circoviruses and geminiviruses" rep_origin join(2001..2007,1..2) /note="nonanucleotide motif; similar to rep-origin of porcine circoviruses, plant circoviruses and geminiviruses" gene 148..1020 /gene="Rep" CDS 148..1020 /inference="non-experimental evidence, no additional details recorded" /codon_start=1 /protein_id="AAG30558.1" /gene="Rep" /translation="MPSKECSGSRRWCFTLNNPTDGEIEYVRALSPDEFHYAIVGREK GEQGTPHLQGYFHFKNKKRLSALKKMLPRAHFERAMGSDLDNEKYCSKEGDVILTLGI VARDGHRAFDRAVAAVMAGSKMKDVAREFPDIYVRHGRGLHNLSLLVGSHPRDFKTEV DVVYGPPGCGKSRWANEQPGTKFYKMRGEWWDGYDGEDIVIIDDFYGWLPYCEMLRLM DRYPHKVPVKGAFVEFTSKRIIITSNKPPQEWYKEDCDPKPLFRRFTRVWWCPGGTTL EQVRADFLAHPINF" /product="putative replicase-associated protein" /note="REP; ORF1; similar to REP protein encoded by porcine circoviruses, plant circoviruses (such as banana bunchy top virus, subterranean clover stunt virus, faba bean necrotic yellow virus and coconut foliar decay virus) and geminiviruses; 33.5 kDa predicted protein" CDS 560..1039 /inference="non-experimental evidence, no additional details recorded" /codon_start=1 /protein_id="AAG30559.1" /translation="MGGACTTFHYWLVPTHVTSRRKSTLCTAPRGVARADGPMNSLVL NFIKCAVSGGMDMTGKISSSLTTSMGGSLIARCSALWTVTHIRCQLRAPLWSLPARGS LSRAISHPRSGTRRTVTRSHCSGDSPVFGGAPVGLRWNKSGQISLPTPSIFEGPGDV" /product="unknown" /note="similar to beak and feather disease virus ORF5 encoded by GenBank Accession Number AF080560; 17 kDa predicted protein" CDS complement(1249..1992) /inference="non-experimental evidence, no additional details recorded" /codon_start=1 /protein_id="AAG30560.1" /translation="MWGTSNCPCAIFQIRRIARPRYRRRHIRRYRPRRTYFRRRRFST NRIYTLRLKRQFKFEIRKQTTQPGNLIWNADYVTFTLENFLTNTPNPSALNFEDYRIK LAKMEMKPTWGHYSIATEGFGHTAVIQDSRIEKFKTRADQSQDPLAPFDGAKKWYLSR GFKRLLRPKPQIMMNDLSTANQSAALWLNSVRTGWIPLQGGPNAAGSKVKHYGLAFSF AQPEIPIPYVCQLTIYVQFRQFAPNNPST" /product="putative capsid protein" /note="similar to capsid protein of porcine circoviruses; 29 kDa predicted protein" misc_feature complement(1978..1980) /note="potential alternative start codon" ORIGIN 1 acccgccgcc tggggcaccg gggcaccgca gccattggct gcggtgcccc gtgcccgccc 61 ctacccgcct atcgcgtgtt cgaaaaacgc cccgaagggg cgttttgagc ccggcgcgta 121 gcgccccaac cacattcgcc cggaactatg ccgtccaagg agtgctctgg ctctcgccgt 181 tggtgtttca cccttaacaa ccctacagac ggcgagatcg aatacgtccg tgctctttcg 241 cctgacgaat tccactatgc catcgttgga cgggagaagg gcgagcaagg taccccccat 301 ttgcaaggct actttcattt taaaaataag aagcgcctga gtgcgcttaa gaaaatgctg 361 ccgcgagctc atttcgagcg tgctatgggg agcgatttgg ataatgagaa gtattgcagt 421 aaagaggggg acgttatact taccctgggc attgtggcga gagacggtca ccgcgctttc 481 gatcgagctg ttgctgccgt gatggccgga agtaaaatga aggacgtcgc gcgagagttc 541 cctgatatct acgtcagaca tgggcggggc ttgcacaacc tttcactatt ggttggttcc 601 cacccacgtg acttcaagac ggaagtcgac gttgtgtacg gccccccggg gtgtggcaag 661 agcagatggg ccaatgaaca gcctggtact aaattttata aaatgcgcgg tgagtggtgg 721 gatggatatg acggggaaga tatcgtcatc attgacgact tctatgggtg gctcccttat 781 tgcgagatgc tccgccttat ggaccgttac ccacataagg tgccagttaa gggcgccttt 841 gtggagttta ccagcaagag gatcattatc acgagcaata agccacccca ggagtggtac 901 aaggaggact gtgacccgaa gccactgttc cggagattca cccgtgtttg gtggtgcccc 961 ggtgggacta cgttggaaca agtccgggca gatttccttg cccaccccat caatttttga 1021 gggtcctgga gatgtttaat aaaggtcggg cgtcaggccg aaggcctgat gccgcagggc 1081 gggacgccct gccggagggt tcgcagggcc gtcaggcccg agaacccgac cagcccggag 1141 ggcctcgtct gtgtcggggg gggggccccg gggggtcccc ccgacatccg tgatagcgcc 1201 gaaggcgcca ataaaaattc gaaaacgtat ttgttgtttg actctttatt aagtacttgg 1261 gttgttgggg gcaaactgac ggaattgaac atatatagtt agctggcata cataagggat 1321 cggtatttct ggctgagcga agctgaaggc caggccgtag tgcttgacct tcgatcctgc 1381 cgcgttgggt cctccttgta gtgggatcca tccggttctg acactgttga gccacaatgc 1441 tgcagactgg ttcgctgtgg agaggtcgtt catcattatt tgtggtttcg gtctgaggag 1501 gcgtttgaat cccctgctaa gataccattt tttggcaccg tcgaacggtg caagtgggtc 1561 ttggctttgg tctgcacgag ttttaaattt ttctattctg gagtcttgga ttacggccgt 1621 gtggccgaat ccttcagtag caatggagta gtggccccat gtgggcttca tctccatttt 1681 agctaactta attcgataat cttcgaaatt cagtgcagat gggtttggtg tgtttgttag 1741 gaagttttcc aatgtgaagg ttacgtagtc agcattccaa attaggttgc caggttgggt 1801 cgtctgtttt ctaatttcaa atttgaattg gcgttttaat ctgagagtgt aaattctatt 1861 ggtcgagaaa cggcgtctgc ggaagtatgt acgtcgtggg cggtatcgcc tgatgtgacg 1921 tctgcggtag cgtgggcggg ctattcgtct tatctgaaat atagcgcatg ggcagttaga 1981 ggtgccccac aggcggcggt tagtatt //