LOCUS AF311300 1995 bp DNA circular VRL 09-FEB-2001 DEFINITION Beak and feather disease virus natural-host Cacatua leabeateri, complete genome. ACCESSION AF311300 VERSION AF311300.1 KEYWORDS . SOURCE Beak and feather disease virus ORGANISM Beak and feather disease virus Viruses; ssDNA viruses; Circoviridae; Circovirus. REFERENCE 1 (bases 1 to 1995) AUTHORS Bassami,M.R. TITLE Genetic studies of beak and feather disease virus JOURNAL Thesis (2000) Murdoch University, Perth, Western Australia, Australia REFERENCE 2 (bases 1 to 1995) AUTHORS Bassami,M.R., Ypelaar,I., Berryman,D., Wilcox,G.E. and Raidal,S.R. TITLE Genetic diversity of beak and feather disease virus detected in psittacine species in Australia JOURNAL Virology 279 (2), 392-400 (2001) PUBMED 11162795 REFERENCE 3 (bases 1 to 1995) AUTHORS Bassami,M.R., Ypelaar,I.B., Wilcox,G.E. and Raidal,S.R. TITLE Direct Submission JOURNAL Submitted (05-OCT-2000) Division of Veterinary and Biomedical Sciences, Murdoch University, South Street, Perth, Western Australia 6150, Australia FEATURES Location/Qualifiers source 1..1995 /mol_type="genomic DNA" /db_xref="taxon:77856" /country="Australia: Western Australia" /organism="Beak and feather disease virus" /host="Cacatua leabeateri" /note="isolated from feather" stem_loop join(1978..1995,1..12) /note="similar to the stem-loop involved in replication of porcine circoviruses, plant circoviruses and geminiviruses" rep_origin join(1989..1995,1..2) /note="nonanucleotide motif; similar to rep-origin of porcine circoviruses, plant circoviruses and geminiviruses" gene 131..1000 /gene="Rep" CDS 131..1000 /inference="non-experimental evidence, no additional details recorded" /codon_start=1 /protein_id="AAG30561.1" /gene="Rep" /translation="MPSKEGSGCRRWCFTLNNPTDGEIEFVRTLGPDEFYYAIVGREK GEQGTPHLQGYFHFKNKKRLSALKKMLPRAHFERAKGSDSDNEKYCSKEGDVILTLGI VARDGHRAFDGAVAAVMSGRKMKEVAREFPDIYVRHGRGLHNLSLLVGSRPRDFKTEV DVIYGPPGCGKSRWANEQPGTKYYKMRGEWWDGYDGEDVVILDDYYGWLPYCEMLRLC DRYPHKVPVKGAFVEFTSKRIIITSNKPPETWYKEDCDPKPLFRRFTRVWWYNVDKLE QARPDFLAHPINY" /product="putative replicase-associated protein" /note="REP; ORF1; similar to REP protein encoded by porcine circoviruses, plant circoviruses (such as banana bunchy top virus, subterranean clover stunt virus, faba bean necrotic yellow virus and coconut foliar decay virus) and geminiviruses; 33.56 kDa predicted protein" CDS 543..848 /inference="non-experimental evidence, no additional details recorded" /codon_start=1 /protein_id="AAG30562.1" /translation="MGGACITSRYWLDPAHVISRLRLTSSTGHPGVARVDGPMSSLGL NIIKCAVNGGMDMMGKMSSSWTTIMGGYLIARCSASATVTHIKCQLRALLWSLPARG" /product="unknown" /note="similar to beak and feather disease virus ORF5 encoded by GenBank Accession Number AF080560; 10.7 kDa predicted protein" CDS complement(1235..1957) /inference="non-experimental evidence, no additional details recorded" /codon_start=1 /protein_id="AAG30563.1" /translation="MRHFQIRRRYARPYRRRHIRRYRYRQRRRHFRRRRFTTNRLYTI RLKREFKFDINKQTTQTGQIIWNSDYVTFALSDFLTAPNPTGWPFEDYRIKLAKMEMK PTWGHSYTNSEGFGHTAVIQDSRISKFKTTADQTQDPLAPFDGARKWYLNKGFKRLLR PKPQITINDLTTVNQSAALWLNSTRTGWIPLQGGPNTAGTKVRHYGLAFSFPQPQTKI TYECILTIYVQFRQFSPNNPST" /product="putative capsid protein" /note="similar to capsid protein of porcine circoviruses; 28.69 kDa predicted protein" ORIGIN 1 acccgccgcc tggggcaccg gggcaccgca gccattggct gccgtgcccc aggtgcccgc 61 ccctactagg gaggaggaaa tgacgccgaa ggcgtcgtaa gctccgaagg atcacactcg 121 cccggtgacc atgccgtcca aggagggctc cggctgtcgc cgttggtgtt tcacccttaa 181 caaccctaca gacggcgaga tcgaattcgt ccgtactctc gggcctgacg aattctacta 241 tgccatcgtt ggacgggaaa aaggcgagca aggtaccccc catctacaag gctactttca 301 ttttaaaaat aagaagcgac tgagcgcgct taagaaaatg ctgccccgag ctcattttga 361 gcgcgctaaa gggagcgatt cggataatga gaagtattgc agtaaagagg gggacgtgat 421 acttaccctg ggcattgtgg cgagagacgg tcaccgcgct ttcgacggag ctgttgctgc 481 cgtgatgtcc ggacgcaaaa tgaaggaagt cgcgcgagag ttcccggata tctacgtcag 541 gcatgggcgg ggcttgcata acctctcgct attggttgga tcccgcccac gtgatttcaa 601 gactgaggtt gacgtcatct acgggccacc cgggtgtggc aagagtagat gggccaatga 661 gcagcctggg actaaatatt ataaaatgcg cggtgaatgg tgggatggat atgatgggga 721 agatgtcgtc atcttggacg actattatgg gtggctacct tattgcgaga tgctccgcct 781 ctgcgaccgt tacccacata aagtgccagt taagggcgct tttgtggagt ttaccagcaa 841 gaggataatt atcacgagca ataagccccc cgagacgtgg tacaaggagg actgtgaccc 901 gaagccactg ttccggagat tcacacgtgt ttggtggtac aacgtggaca agttggaaca 961 agcccggcct gacttcctcg cccaccccat caattattga tagtctcggt gatgttttca 1021 taaagctagg cgtcgggccg aaggcccgat gccgcagggg gggaccccct gccggagggc 1081 tcgcagggcc gtcaggcccg aaagaccgac cagcccggag ggcgtattca gtgtcggggg 1141 ggggcccccg gggggtcccc ccgacacgac gagcacggtc agcgccgaag gcgccaataa 1201 acactctaaa acgtatttgc tgtctgagtc tttattaggt gctgggattg ttcggggaaa 1261 actggcggaa ttgaacatag atagtgagaa tgcattcata agtgatcttt gtttgtggct 1321 gtgggaagct gaatgcaagg ccgtagtgcc tgaccttcgt tcctgctgtg ttgggtcctc 1381 cttgtagtgg gatccatccg gttctggtgc tgttcagcca caatgctgca gactggttca 1441 ccgtggtcag gtcgtttatt gtgatttgtg gtttaggtct gaggaggcgt ttgaatccct 1501 tgttaagata ccactttctg gcaccgtcga aaggtgccag cgggtcttgt gtttggtctg 1561 cagtagtctt aaatttactt attctggagt cttgaattac ggccgtgtgg ccgaatcctt 1621 ctgaattagt gtatgagtgg ccccatgtgg gcttcatttc cattttagct aacttaatcc 1681 ggtaatcttc gaagggccaa cctgttgggt tcggtgctgt taggaagtct gacagtgcaa 1741 aggttacgta gtcagaattc caaataattt ggccagtttg ggtggtttgt ttgtttatat 1801 cgaatttgaa ttcgcgtttg agtctaatag tgtaaagtct attggttgtg aaacggcgtc 1861 tgcggaagtg tctacgtcgc tggcggtatc ggtatcgcct gatgtgacgt ctgcggtatg 1921 ggcgggcata tctacgtcga atctgaaagt ggcgcatgcg cagttagagg tgccccacag 1981 gcggcggtta gtatt //