LOCUS JX049221 2002 bp ss-DNA circular VRL 31-OCT-2012 DEFINITION Beak and feather disease virus isolate 2NC931B, complete genome. ACCESSION JX049221 VERSION JX049221.1 KEYWORDS . SOURCE Beak and feather disease virus ORGANISM Beak and feather disease virus Viruses; ssDNA viruses; Circoviridae; Circovirus. REFERENCE 1 (bases 1 to 2002) AUTHORS Julian,L., Lorenzo,A., Chenuet,J.P., Bonzon,M., Marchal,C., Vignon,L., Collings,D.A., Walters,M., Jackson,B. and Varsani,A. TITLE Evidence of multiple introductions of beak and feather disease virus into the Pacific islands of Nouvelle-Caledonie (New Caledonia) JOURNAL J. Gen. Virol. 93 (PT 11), 2466-2472 (2012) PUBMED 22855782 REFERENCE 2 (bases 1 to 2002) AUTHORS Varsani,A., Julian,L., Lorenzo,A., Chenuet,J.-P., Bonzon,M., Marchal,C., Vignon,L., Walters,M. and Jackson,B. TITLE Direct Submission JOURNAL Submitted (13-MAY-2012) School of Biological Sciences, University of Canterbury, Private Bag 4800, Christchurch 8014, New Zealand COMMENT ##Assembly-Data-START## Assembly Method :: DNAMAN v. 5.2.9 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..2002 /mol_type="genomic DNA" /country="New Caledonia" /collection_date="2011" /host="Psittacula krameri" /db_xref="taxon:77856" /isolate="2NC931B" /organism="Beak and feather disease virus" CDS 135..1004 /codon_start=1 /protein_id="AFM55202.1" /translation="MPSKEGSGCRRWCFTLNNPTDGEIEFVRTLGPDEFYYVIVGREK GEQGTPHLQGYFHFKNKKRLSALKKLLPRAHFERAKGSDADNEKYCSKEGDVILTLGI VARDGHRAFDGAVAAVMSGRKMKEVAREFPDIYVRHGRGLHNLSLLVGSRPRDFKTEV DVIYGPPGCGKSRWANEQPGTKYYKMRGEWWDGYDGEEVVVLDDFYGWLPYCEMLRLC DRYPHKVPVKGAFVEFTSKRIIITSNKPPETWYKEDCDPKPLFRRFTRVWWYNVDKLE QVRPDFLAHPINF" /product="replication associated protein" CDS complement(1242..>1979) /codon_start=1 /protein_id="AFM55203.1" /translation="SNCACATFQIRRRYPRPYYRRRHIRRYRLRRRRHFRRRRFTTNR IYILRFKRQFKFQINKNTTQPSNVIWNSDYITFTLSDFLTNTPNPPTLNFEDYRIKLA KMEMRPTWGHYTISSDGFGHTAVIQDSRITKFKTTADQTQDPLAPFDGSKKWFISRGF KRLLRPKPQITINDLSTANQSAALWLNSVRTGWIPLQGGPNAAGANVKHYGIAFSFPQ PEVTITYVCQLTLYVQFRQFAPNNPST" /product="capsid protein" /note="TCT (serine) codon appears to be the translation initiation codon" ORIGIN 1 tattacccgc cgcctggggc accggggcac cgcagccatt ggctgcggtg ccccaacccc 61 tcccactagg gtggagagaa tggcgccgtt atacggcgcc gtgatctccg gaggatcaca 121 ctcgctcggg aaccatgccg tccaaggagg gctctggctg tcgccgttgg tgtttcaccc 181 ttaacaatcc tacagacggc gagatcgaat tcgtccgtac tctcgggcct gacgaattct 241 actatgtcat cgttggacgg gaaaagggcg agcaaggtac cccccatttg caagggtact 301 ttcattttaa aaataagaag cgactgagcg cgcttaagaa attgttgccg cgagctcatt 361 ttgagcgcgc taaagggagc gatgcggaca atgagaagta ttgcagtaaa gaaggcgacg 421 ttatacttac tctgggcatt gtggcgagag acggtcaccg cgctttcgac ggagctgttg 481 ctgccgtgat gtccggacgc aaaatgaagg aagtcgcgcg agagttccca gatatctacg 541 tcaggcatgg gcggggcttg cataacctct cgctattggt tggttcccgc ccacgtgatt 601 tcaagactga ggttgacgtc atctacggac caccggggtg tggcaaaagt agatgggcca 661 atgagcagcc tgggactaaa tattataaaa tgcgcggtga atggtgggat ggatatgatg 721 gggaggaagt cgttgtattg gacgactttt atgggtggct accttattgc gagatgctcc 781 gcctctgcga ccgttaccca cataaagtgc cagttaaggg cgcgtttgtg gagtttacga 841 gcaagaggat cattattacc agcaataagc ccccagagac ctggtacaag gaggactgtg 901 acccgaagcc actcttccgg agattcactc gtgtttggtg gtataatgtg gacaagttgg 961 aacaagtccg gcctgatttc ctcgcccacc ccatcaattt ttagagcgtc tcggtgatga 1021 ttaagaaaag ccgggcgtca ggccgaaggc ctgatgccgc aaggcgggac gccctgcctg 1081 agggctcgca ggaccgtcag gcccgagagc ccgaccagcc cggagggcct cgtctgtgtc 1141 gggggggggg ggccccgggg ggtccccccg acacgaccaa cacggtagcg ccgaaggcgc 1201 caaataaaca ctcgaaaagg tatttgttgt ctgagtcttt attaagtgct gggattgtta 1261 ggggcaaact gacggaattg aacatacaaa gtgagctgac atacataagt gatcgttact 1321 tctggctgcg ggaagctgaa ggcaatgccg tagtgcttga cgtttgctcc tgccgcgttg 1381 ggtcctcctt gtagtgggat ccagccggtt ctgacgctgt tcagccacaa tgctgcagac 1441 tggttcgctg tgctcaggtc gtttattgtt atttgtggtt tcggtctgag gaggcgtttg 1501 aatcccctgc tgataaacca ttttttggaa ccgtcgaaag gtgccaatgg gtcttgtgtt 1561 tggtctgcag tagttttaaa tttagttatt ctggagtctt ggattacggc cgtgtggccg 1621 aatccgtctg aactaatggt gtagtggccc catgtgggtc tcatttccat tttagctaac 1681 ttaattcggt agtcttcgaa attaagtgtt ggtgggttcg gtgtgtttgt taggaagtct 1741 gataatgtaa aggttatata gtcagaattc caaattacgt tgctaggttg tgtggtgttt 1801 ttgttaattt ggaatttgaa ctggcgtttg aatctgagaa tgtaaattct attggttgtg 1861 aaacggcgtc tgcggaaatg tctacgtcgt cgtaggcggt atcgcctgat gtgacgtcta 1921 cggtagtatg ggcggggata tcttcgtcta atctgaaatg tagcgcatgc gcagttagag 1981 gtgccccaac ggcggcggtt ag //