LOCUS       AY450443                1993 bp    DNA     circular VRL 15-AUG-2004
DEFINITION  Beak and feather disease virus isolate AFG3-ZA, complete genome.
ACCESSION   AY450443
VERSION     AY450443.1
KEYWORDS    .
SOURCE      Beak and feather disease virus
  ORGANISM  Beak and feather disease virus
            Viruses; ssDNA viruses; Circoviridae; Circovirus.
REFERENCE   1  (bases 1 to 1993)
  AUTHORS   Heath,L., Martin,D.P., Warburton,L., Perrin,M., Horsfield,W.,
            Kingsley,C., Rybicki,E.P. and Williamson,A.L.
  TITLE     Evidence of unique genotypes of beak and feather disease virus in
            southern Africa
  JOURNAL   J. Virol. 78 (17), 9277-9284 (2004)
   PUBMED   15308722
REFERENCE   2  (bases 1 to 1993)
  AUTHORS   Heath,L.E. and Rybicki,E.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-OCT-2003) Molecular and Cell Biology, University of
            Cape Town, Private Bag, Rondebosch, Cape Town, Western Cape 7701,
            South Africa
FEATURES             Location/Qualifiers
     source          1..1993
                     /mol_type="genomic DNA"
                     /db_xref="taxon:77856"
                     /isolate="AFG3-ZA"
                     /organism="Beak and feather disease virus"
                     /host="Psittacus erithacus"
     gene            131..997
                     /gene="rep"
     CDS             131..997
                     /inference="non-experimental evidence, no additional
                     details recorded"
                     /codon_start=1
                     /protein_id="AAT00480.1"
                     /gene="rep"
                     /translation="MPSKEGSGCRRWCFTLNNPTDGEIEFVRSLGPDEFYYAIVGREK
                     GEQGTPHLQGYFHFKSKKRLSALKKMLPRGHFERAKGSDAENEKYCSKEGDVILTLGI
                     VARDGHRAFDGAVAAVMSGRKMKEVAREFPDIYVRHGRGLHNLSLMVGSRPRDFKTEV
                     DVIYGPPGCGKSRWANEQPGTKYYKMRGEWWDGYDGEDVVILDDFYGWLPYCEMLRLC
                     DRYPHKVPVKGAFVEFTSKRXIITSNKPPETWYQEDCDPKPLFRRFTRVWWYTDKLEQ
                     VRPDFLAHPINF"
                     /product="putative replicase-associated protein"
                     /note="REP; ORF1; similar to REP protein encoded by
                     porcine circoviruses"
     CDS             complement(1232..1978)
                     /inference="non-experimental evidence, no additional
                     details recorded"
                     /codon_start=1
                     /protein_id="AAT00481.1"
                     /translation="MWGTSNCACAIFQIRRRWTRPYYRRRHIRRYRRRRRYFRRRRFS
                     TNRIYTLRFKRQFKFQILKQTTQPGNVIWKSDYITFALSDFLNTPNPPTLNFEDYRIK
                     LAKMEMRPTWGHYTINADGFGHTAVIQDSRITKFKTTADQSQDPVAPFDGAKKWYVSR
                     GFKRLLRPKPQITIDDLTTANQSAALWLNSARTGWIPLQGGPNSAGAKVKHYGLAFSF
                     PQPEVTITYVCMITLYVQFRQFAPNNPNPT"
                     /product="putative capsid protein"
                     /note="similar to capsid protein of porcine circoviruses"
ORIGIN      
        1 acccgccgcc tggggcaccg gggcaccgca gctattggct gcattgccga ggtgcccgcc
       61 cctagggagg agtaaatggc gccgttatac ggcgccgtaa tctccggagg atcatactcg
      121 cccagtaacc atgccgtcca aggagggctc tggctgtcgc cgttggtgtt tcacccttaa
      181 caaccctaca gacggcgaga tcgaattcgt ccgttctctc gggcctgacg aattctacta
      241 tgccatcgtt ggacgggaga agggcgagca aggtaccccc catttgcaag gctactttca
      301 ttttaaaagt aagaagcgac tgagcgcgct taagaaaatg ctgccgcgag gtcattttga
      361 gcgcgctaaa gggagcgatg cggagaatga gaagtattgc agtaaggagg gggacgtaat
      421 acttaccctg ggcattgtgg cgagagacgg tcaccgcgct ttcgacggag ctgttgctgc
      481 cgtgatgtcc ggacgcaaaa tgaaggaagt cgcgcgagag ttcccagata tctacgtcag
      541 gcatgggcgg ggcttacata atctctcgct aatggttggt tcccggccac gtgacttcaa
      601 gactgaggtc gacgtcatct acggaccacc ggggtgtggc aagagtagat gggccaatga
      661 gcagccgggg accaaatatt ataaaatgcg cggtgaatgg tgggatggat atgatgggga
      721 agatgtcgtt atcttggacg acttctatgg gtggctacct tattgcgaga tgctccgcct
      781 ctgtgaccgt tacccacaca aagtgccagt taagggcgcc tttgtggagt ttacgagcaa
      841 gaggatnatt atcacgagca ataagccccc cgagacttgg taccaggagg actgtgaccc
      901 gaagccactg ttccggagat tcactcgtgt ttggtggtac actgacaagt tggaacaagt
      961 ccggcctgat ttcctcgccc accccatcaa tttctgatcg tttcggtgat gtttaataaa
     1021 tttaggcgtc gggccgaagg cccgatgccg cagtgggggg accccctgcc ggagggttcg
     1081 cagggccgtc aggcccgaga acccgaccag cccggagggc ctcgtctgtg tcgggggggg
     1141 gggccccggg gggtcccccc gacacgacca acacggtagc gccgaaggcg ccaataaaca
     1201 ctcgaaaagg tacttgctgt ttgagtcttt attaagtggg gtttggattg ttgggggcaa
     1261 actgacggaa ttgaacatac aaagtgatca tgcatacata agtgatcgtt acttctggct
     1321 gagggaagct gaatgcaagg ccgtagtgct tgaccttcgc tcctgctgag ttgggtcctc
     1381 cttgtagtgg gatccagccg gttctggcgc tgtttagcca caatgctgca gactggttcg
     1441 ctgtggtcag gtcgtctatc gttatttgtg gtttcggtct gagaaggcgt ttgaatcccc
     1501 tgctaacata ccattttttg gcaccgtcga aaggtgccac cgggtcttgt gattggtctg
     1561 cagtagtttt aaatttagtt attctggaat cttggattac ggccgtgtgg ccgaatccgt
     1621 ctgcattaat ggtgtagtgg ccccatgtgg gcctcatttc cattttagct aacttaatcc
     1681 ggtagtcttc gaaattcagt gttggtgggt ttggtgtgtt taggaagtct gacaatgcaa
     1741 aggttatgta gtcagatttc caaattacgt tgccaggttg ggtggtttgt tttaaaattt
     1801 ggaatttgaa ttggcgtttg aatctgagag tgtaaattct attggttgag aaacggcgtc
     1861 tgcggaagta tctacgtcgc cggcggtatc gcctgatgtg acgtctgcgg tagtatgggc
     1921 gggtccatct tcgtctaatc tgaaatatag cgcatgcgca gttagaggtg ccccacaggc
     1981 ggcggttagt att
//