LOCUS       AY450435                1988 bp    DNA     circular VRL 15-AUG-2004
DEFINITION  Beak and feather disease virus isolate AFG4-ZA, complete genome.
ACCESSION   AY450435
VERSION     AY450435.1
KEYWORDS    .
SOURCE      Beak and feather disease virus
  ORGANISM  Beak and feather disease virus
            Viruses; ssDNA viruses; Circoviridae; Circovirus.
REFERENCE   1  (bases 1 to 1988)
  AUTHORS   Heath,L., Martin,D.P., Warburton,L., Perrin,M., Horsfield,W.,
            Kingsley,C., Rybicki,E.P. and Williamson,A.L.
  TITLE     Evidence of unique genotypes of beak and feather disease virus in
            southern Africa
  JOURNAL   J. Virol. 78 (17), 9277-9284 (2004)
   PUBMED   15308722
REFERENCE   2  (bases 1 to 1988)
  AUTHORS   Heath,L.E. and Rybicki,E.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-OCT-2003) Molecular and Cell Biology, University of
            Cape Town, Private Bag, Rondebosch, Cape Town, Western Cape 7701,
            South Africa
FEATURES             Location/Qualifiers
     source          1..1988
                     /mol_type="genomic DNA"
                     /db_xref="taxon:77856"
                     /isolate="AFG4-ZA"
                     /organism="Beak and feather disease virus"
                     /host="Psittacus erithacus"
     gene            127..996
                     /gene="rep"
     CDS             127..996
                     /inference="non-experimental evidence, no additional
                     details recorded"
                     /codon_start=1
                     /protein_id="AAT00470.1"
                     /gene="rep"
                     /translation="MPSKEGSGCRRWCFTLNNPTDGEIEYVRALRSDEFHYAIIGREQ
                     GEQGTPHLQGYLHFKTKKRLSALKKMFPRAHFERAKGSDADNEKYCSKEGDVILTLGI
                     VARDGHRAFDGAVAAVMSGRKMKEVAREFPEIYVRHGRGLHSLSLLVGSRPRDFKTEV
                     DVIYGPPGCGKSKWANEQPGTKYYKMRGEWWDGYDGEDVVILDDFYGWLPYCEMLRLC
                     DRYPHKVPVKGAFVEFTSKRIIITSNKAPETWYKEDCDPKPLFRRFTRVWWYNIDKLE
                     QVRPDFLAHPINF"
                     /product="putative replicase-associated protein"
                     /note="REP; ORF1; similar to REP protein encoded by
                     porcine circoviruses"
     CDS             complement(1227..1973)
                     /inference="non-experimental evidence, no additional
                     details recorded"
                     /codon_start=1
                     /protein_id="AAT00471.1"
                     /translation="MWGTSNCACAIFQVRRRYTRPYYRRRHIRRYRRRRRHFRRRRFS
                     TNRVYTLRLTRQFKFQIQKQTTSTGNLIFNSDFVTFALSDFITNTPNPQTLNFENYRI
                     KLAKMEMRPTWGHYTIQGDGFGHTAVIQDPRISKFKTVADQTQDPLAPFDGAKKWYVS
                     RGFKRLLRPKPQITINDLTTANQSAALWLNSARTGWIPLQGGPNAAGAKVRHYGIAFS
                     FPQPEQTITYVTKLTIYVQFRQFAPNNPST"
                     /product="putative capsid protein"
                     /note="similar to capsid protein of porcine circoviruses"
ORIGIN      
        1 acccgccgcc tggggcaccg gggcactgca gccattggct gcaggccccc cgtgcccgcc
       61 tctagggagg agcaactggc gccgttaggc gccgtaagct ccggaggatc acactcgccc
      121 ggaactatgc cgtccaagga gggctccggc tgtcgccgtt ggtgtttcac ccttaacaac
      181 cctaccgacg gcgagatcga atacgtccgt gctctccggt ctgacgaatt ccactatgcc
      241 atcattggac gggaacaggg cgagcaaggt accccccatt tgcaaggcta cctccatttt
      301 aaaactaaga agcgactgag cgcgcttaag aaaatgtttc cgcgagcgca ttttgagcgc
      361 gctaaaggga gcgatgcgga taatgagaag tattgtagta aagaggggga cgtgatactt
      421 accctgggca ttgtggcgag agacggtcac cgcgctttcg atggagctgt tgctgccgtg
      481 atgtccggac gcaaaatgaa ggaagtcgcg cgagagttcc cggagatcta cgtcaggcat
      541 gggcggggct tgcatagcct ctcgctattg gttggttccc gcccgcgtga tttcaagact
      601 gaggtcgacg tcatttacgg gcctccgggg tgtggcaaga gtaaatgggc caatgagcag
      661 ccggggacta aatattataa aatgcgcggg gaatggtggg atggatatga tggggaagat
      721 gtcgtcattt tggacgactt ttatgggtgg ttaccttatt gcgagatgct ccgcctctgt
      781 gaccgttacc cacataaagt gccagttaag ggcgcttttg tggagtttac cagcaagagg
      841 atcattatca cgagcaataa ggcccccgag acttggtaca aggaggactg tgacccgaag
      901 ccactgttcc ggagatttac tcgtgtatgg tggtacaaca ttgacaagtt ggaacaagtc
      961 cggcctgatt ttctcgccca ccccatcaat ttttgatagt ctcggtgatg tttaataaag
     1021 ttaggcgtcg ggcagaaggc ccgatgccgc agggggggac cccctgccgg agggttcgca
     1081 gggccgtcag gcccgagaac ccgagcagcc cggagggcta gtctgtgccg ggggggggcc
     1141 ccggggggtc cccccgacac gacgaacacg gtagcgccga aggcgccaat aaacactcga
     1201 aaaggtattt gctgtttgag tctttattaa gtactgggat tgttgggggc aaactgacgg
     1261 aattgaacat atatagtgag cttggttaca taagtgattg tttgttctgg ctgagggaag
     1321 ctgaaggcaa tgccgtagtg cctgactttt gctcctgctg cgttgggtcc tccttgtagt
     1381 gggatccagc cggttctggc actgtttagc cacaatgctg cagactggtt cgctgtggtg
     1441 aggtcgttta ttgttatctg tggtttcggc ctgaggaggc gtttgaatcc cctgctaaca
     1501 taccattttt tggcaccgtc gaagggtgcc agtgggtctt gtgtttggtc tgcaacagtt
     1561 ttaaatttac ttatcctggg gtcttggatt acggccgtgt ggccgaatcc atctccttgt
     1621 atggtgtagt gtccccatgt gggcctcatt tccattttag ccaacttaat ccggtagttt
     1681 tcgaaattca gtgtttgtgg gtttggtgtg tttgttatga agtccgacaa tgcaaaggtt
     1741 acaaagtcgg aattaaaaat taagttgcca gtactggtgg tttgtttttg aatttggaat
     1801 ttgaattggc gtgtgagtct gagagtgtaa accctattgg ttgagaaacg gcgtctgcgg
     1861 aagtgtctac gtcgccggcg gtatcgcctg atgtgacgtc tgcggtagta tgggcgggta
     1921 tatcgtcgtc taacctgaaa tatagcgcat gcgcagttag aggtgcccca caggcggcgg
     1981 ttagtatt
//