LOCUS       JX049195                2013 bp    ss-DNA  circular VRL 31-OCT-2012
DEFINITION  Beak and feather disease virus isolate AU-D2C, complete genome.
ACCESSION   JX049195
VERSION     JX049195.1
KEYWORDS    .
SOURCE      Beak and feather disease virus
  ORGANISM  Beak and feather disease virus
            Viruses; ssDNA viruses; Circoviridae; Circovirus.
REFERENCE   1  (bases 1 to 2013)
  AUTHORS   Julian,L., Lorenzo,A., Chenuet,J.P., Bonzon,M., Marchal,C.,
            Vignon,L., Collings,D.A., Walters,M., Jackson,B. and Varsani,A.
  TITLE     Evidence of multiple introductions of beak and feather disease
            virus into the Pacific islands of Nouvelle-Caledonie (New
            Caledonia)
  JOURNAL   J. Gen. Virol. 93 (PT 11), 2466-2472 (2012)
   PUBMED   22855782
REFERENCE   2  (bases 1 to 2013)
  AUTHORS   Varsani,A., Julian,L., Lorenzo,A., Chenuet,J.-P., Bonzon,M.,
            Marchal,C., Vignon,L., Walters,M. and Jackson,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAY-2012) School of Biological Sciences, University
            of Canterbury, Private Bag 4800, Christchurch 8014, New Zealand
COMMENT     ##Assembly-Data-START## Assembly Method :: DNAMAN v. 5.2.9
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..2013
                     /mol_type="genomic DNA"
                     /country="Australia"
                     /collection_date="2009"
                     /host="Trichoglossus haematodus"
                     /db_xref="taxon:77856"
                     /isolate="AU-D2C"
                     /organism="Beak and feather disease virus"
     CDS             153..1025
                     /codon_start=1
                     /protein_id="AFM55150.1"
                     /translation="MPSKEGSGSRRWCFTLNNPTDGEIEYVRALSPDEFHYAIVGREK
                     GEKGTPHLQGYFHFKNKKRLSALKKMLPRAHFERAKGSDADNEKYCSKEGDVILTLGI
                     VARDGHRAFDRAVAAVMAGSKMKDVAREFPDIYVRHGRGLHNLSLLVGSHPRDFKTEV
                     DVVYGPPGCGKSRWANEQPGTKFYKMRGEWWDGYDGEDIVIIDDFYGWLPYCEMLRLM
                     DRYPHKVPVKGAFVEFTSKRIIITSNKPPHEWYKEDYDPKPLFRRFTRVWWCPGGTTL
                     EQVRPDFLAHPINF"
                     /product="replication associated protein"
     CDS             complement(1259..>1990)
                     /codon_start=1
                     /protein_id="AFM55151.1"
                     /translation="SNCACAIFQMRRRVRPRYRRRHIRRYRPRRKYFRRRRFSTNRIY
                     TLRFKRQFKFEIAKQTTQTGQLIWNSDYVTFTLDDFLTNTPNPSALNFEDYRIKLAKM
                     EMRPTWGHYSIATEGFGHTAVIQDSRITKFKTTADQTQDPLAAYDGSKKWYISRGFKR
                     LLRPKPQLTINDLNTANQSAALWLNSVRTGWIPLQGGPNTAGPKVKHYGLAFSFPQPE
                     IPIPYVCQLTIYVQFRQFAPNNPST"
                     /product="capsid protein"
                     /note="TCT (serine) codon appears to be the translation
                     initiation codon"
ORIGIN      
        1 tattacccgc cgcctggggg accggggcac cgcagccatg gcctgcgtgt gccccgtgcc
       61 cgcccctacc cgcccatcgc gtgttcgaaa aacgcctcga aggggcgttt tgagcccggc
      121 gcgtagcgcc ccaaccgtca ctcgcttgaa ctatgccgtc caaggaaggc tctggctctc
      181 gccgctggtg tttcaccctt aacaacccta cagacggcga gatcgaatac gtccgtgctc
      241 tttcgcctga cgaattccac tatgccatcg ttggacggga aaagggcgag aaaggtaccc
      301 cccatttgca aggctacttt cattttaaaa ataagaagcg cctgagtgcg cttaagaaaa
      361 tgctgccgcg agctcatttc gagcgtgcta aagggagcga tgcggataat gagaagtatt
      421 gcagtaaaga gggggacgtt atacttaccc tgggcattgt ggcgagagac ggtcaccgcg
      481 ctttcgaccg agctgttgct gccgtgatgg ccggaagtaa aatgaaggac gtcgcgcgag
      541 agtttcctga tatctacgtc agacatgggc ggggcttgca caatctttca ctattggttg
      601 gttcccaccc acgtgacttc aagacggaag ttgacgttgt gtacggcccc ccggggtgtg
      661 gcaagagcag atgggccaat gaacagcctg ggactaaatt ttataaaatg cgcggtgaat
      721 ggtgggatgg atatgatggg gaagatatcg tcatcattga cgacttctat gggtggctcc
      781 cttattgcga gatgctccgc cttatggacc gttacccaca taaggtgcct gttaagggcg
      841 cctttgtgga gtttaccagc aagaggatca ttataacgag caataagcca ccccatgagt
      901 ggtacaagga ggactatgac ccgaagccac tgttccggag attcacacgt gtatggtggt
      961 gccccggtgg gactacgttg gaacaagtcc ggcctgattt ccttgcccac cccatcaatt
     1021 tttgagggtc ccggagatgt ttaataaagc cgggcgtcgg gccgaaggcc cgatgccgca
     1081 gggcgggacg ccctgccgga gggttcgcag ggccgtcagg cccgagaacc cgaccagccc
     1141 ggagggcctc gtctgtgtcg gggggggggc cccggggggt ccccccgaca cgaccatccg
     1201 tgatagcgcc gaaggcgcca ataaaaattc gaaaagcctt ttgttgtttg actctttatt
     1261 aagtactggg attgttgggg gcaaattgac ggaattgaac atagatagtt agctggcata
     1321 cataagggat cggtatttct ggctgaggga agctgaatgc aaggccgtag tgcttgacct
     1381 ttgggcctgc tgtgttgggt cctccttgta gtgggatcca tccggttctg acgctgttta
     1441 gccacaatgc cgccgactgg ttcgcagtgt tcaggtcgtt tatcgttaat tgtggtttgg
     1501 gtctgaggag gcgtttgaac cccctgctaa tataccattt tttggaaccg tcgtatgctg
     1561 caagcgggtc ttgtgtttgg tctgcagtag ttttaaattt agttattctg gagtcttgga
     1621 ttacggccgt gtggccgaat ccttctgtag caatggagta gtggccccat gtgggcctca
     1681 tctccatttt agctaattta attcggtaat cttcgaaatt aagtgcagat gggtttggtg
     1741 tgtttgttag gaagtcgtct aatgtaaatg taacgtagtc agaattccaa attagctggc
     1801 cagtttgggt ggtttgtttt gcaatttcga atttgaattg gcgtttgaat ctgagagtgt
     1861 aaattctatt ggtcgagaaa cggcgtctgc ggaagtattt acgtcgtggg cggtatcgcc
     1921 tgatgtgacg tctgcggtaa cgtgggcgga ctcttcgtct catctgaaat atagcgcatg
     1981 cgcagttaga ggtgccccac aggcggcggt tag
//