LOCUS AY450442 1996 bp DNA circular VRL 15-AUG-2004 DEFINITION Beak and feather disease virus isolate BCL1-ZA, complete genome. ACCESSION AY450442 VERSION AY450442.1 KEYWORDS . SOURCE Beak and feather disease virus ORGANISM Beak and feather disease virus Viruses; ssDNA viruses; Circoviridae; Circovirus. REFERENCE 1 (bases 1 to 1996) AUTHORS Heath,L., Martin,D.P., Warburton,L., Perrin,M., Horsfield,W., Kingsley,C., Rybicki,E.P. and Williamson,A.L. TITLE Evidence of unique genotypes of beak and feather disease virus in southern Africa JOURNAL J. Virol. 78 (17), 9277-9284 (2004) PUBMED 15308722 REFERENCE 2 (bases 1 to 1996) AUTHORS Heath,L.E. and Rybicki,E.P. TITLE Direct Submission JOURNAL Submitted (27-OCT-2003) Molecular and Cell Biology, University of Cape Town, Private Bag, Rondebosch, Cape Town, Western Cape 7701, South Africa FEATURES Location/Qualifiers source 1..1996 /mol_type="genomic DNA" /db_xref="taxon:77856" /isolate="BCL1-ZA" /organism="Beak and feather disease virus" /host="Agapornis nigrigenis" gene 130..996 /gene="rep" CDS 130..996 /inference="non-experimental evidence, no additional details recorded" /codon_start=1 /protein_id="AAT00479.1" /gene="rep" /translation="MPSKEGSGCRRWCFTLNNPTDGEIEFVRSLGPDEFYYAIVGREK GEQGTPHLQGYFHFKNKKRLSALKKMLPRAHFERAKGSDADNEKCCSKEGDVILTLGI VARDGHRAFDGAVAAVMSGRKMKEVAREFPDIYVRHGRGLHSLSLLVGSRPRDFKTEV DVIYGPPGCGKSRWANEQPGSKYYKMRGEWWDGYDGEEVVIIDDFYGWLPYCETLRLC DRYPHKVPVKGAFVEFTSKRIIITSNKPPETWYKEDCDPKPLFRRFTRVWWYTDKLEQ VRSDFLAHPINY" /product="putative replicase-associated protein" /note="REP; ORF1; similar to REP protein encoded by porcine circoviruses" misc_feature complement(1231..1980) /inference="non-experimental evidence, no additional details recorded" /note="similar to capsid protein genes of porcine circoviruses" ORIGIN 1 acccgccgcc tggggcaccg gggcaccgca gccagtggct gcggtgccga ggtgcccgcc 61 cctaggcgga gtaaatggcg ccgttatacg gcgccgtaat ctccggagga tcacactcgc 121 ccgggaacca tgccgtccaa ggagggctct ggttgtcgcc gttggtgttt tacccttaac 181 aaccctacag acggcgagat cgaattcgtc cgttctctgg ggcctgacga attctactat 241 gccatcgttg gacgggaaaa gggcgagcaa ggtacccccc acctgcaagg ctactttcat 301 tttaaaaata agaagcgact gagtgcgctt aagaaaatgc tgccgcgagc gcattttgag 361 cgcgctaaag ggagcgatgc ggataatgag aagtgttgca gtaaagaggg ggacgttata 421 cttaccctgg gcattgtggc gagagacggt caccgcgcgt tcgacggagc tgttgctgcc 481 gtgatgtccg gacgtaaaat gaaggaagtc gcgcgagagt tcccagatat ctacgtcagg 541 catgggcggg gcttgcatag cctttcgcta ttggtcggtt cccgcccacg tgacttcaag 601 acagaggtcg acgtcatcta tggaccgccg gggtgtggca agagtagatg ggccaatgag 661 cagcctggga gtaaatatta taaaatgcgc ggtgaatggt gggatggata tgatggggaa 721 gaagtcgtca tcattgacga cttttatggg tggctaccct attgcgagac gctccgcctc 781 tgcgaccgtt acccacataa agtgccagtt aagggcgctt ttgtggagtt tacgagcaag 841 aggatcatta tcacgagcaa taagcccccc gagacttggt acaaggagga ctgtgacccg 901 aagccactgt tccggagatt cacccgtgta tggtggtaca ctgacaagtt ggaacaagtc 961 cggtctgatt tcctcgccca ccccatcaat tattgatcgt ctcggtgatg attaaaaaaa 1021 tccgggcgtc aggccgaagg cctgatgccg cagggcggga cgccctgccg gaggggtcgc 1081 agggccgtca ggcccgagag cccgaccagc ccggagggcc tcgtctgtgt cggggggggg 1141 gccccggggg gtccccccga cacgaccaac acggtcagcg ccgaaggcgc caataaacac 1201 tcgaaaaggt atttgcagtt tgagtcttta ttaagtactg ggattgttag gggcaaactg 1261 acggaattga acatacaaag tgagctggca tacataagtg atctttacgt ctggctgagg 1321 gaagctgaaa gcaaggccgt agtgcttgac tttcgttcct gccgcgtcgg gtcctccttg 1381 tagtgggatc cagccggttc ttgcgctgtt tagccacaat gccacagact ggttcgtagc 1441 ggccaggtct tctattgtta tttgtggttt cggtctgagg aggcgtttga atcccctggc 1501 aacataccac tttttcgcac cgtcgaaagg tgccagtgga tcttgatttt ggtctttttt 1561 tgttttaaat ttagttattc tggaatcttg gattacggcc gtgtggccga atccttctgc 1621 actaattgtg tagtggcccg atgtgggcct aagttccatt ttggctaact taatgcggta 1681 gtcttcgaaa ttcagtgtat gtgggtttgg tgtgttttct aggaagtctg acaatacaaa 1741 ggttatgtag tcagaattcc aaatgatgtt gccaggactg gtggtttgtt tttgaatgtc 1801 gaatttgaat tggcgtttga atctgatagt gtaaattcta ttggttgaga aacggcgtct 1861 gcggaagtat ctacgtcgcc ggtggtatcg cctgatgtga cgtctgcggt agtatgggcg 1921 ggcatatcta cgtcgtctaa tctgaaattt agcgcatgcg cagttagagg tgccccagca 1981 ggcggcggtt agtatt //