LOCUS       KF385414                1991 bp    DNA     circular VRL 08-JUL-2014
DEFINITION  Beak and feather disease virus isolate BFDV_AUS_SCC_06_854,
            complete genome.
ACCESSION   KF385414
VERSION     KF385414.1
KEYWORDS    .
SOURCE      Beak and feather disease virus
  ORGANISM  Beak and feather disease virus
            Viruses; ssDNA viruses; Circoviridae; Circovirus.
REFERENCE   1  (bases 1 to 1991)
  AUTHORS   Sarker,S., Ghorashi,S.A., Forwood,J.K., Bent,S.J., Peters,A. and
            Raidal,S.R.
  TITLE     Phylogeny of beak and feather disease virus in cockatoos
            demonstrates host generalism and multiple-variant infections
            within Psittaciformes
  JOURNAL   Virology 460-461, 72-82 (2014)
   PUBMED   25010272
REFERENCE   2  (bases 1 to 1991)
  AUTHORS   Sarker,S., Ghorashi,S.A., Forwood,J.K. and Raidal,S.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUL-2013) School of Animal and Veterinary Sciences,
            Charles Sturt University, Locked Bag 588, Boorooma street, Wagga
            Wagga, NSW 2650, Australia
COMMENT     ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy
            sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1991
                     /mol_type="genomic DNA"
                     /country="Australia"
                     /isolation_source="feather"
                     /collection_date="2006"
                     /host="Cacatua galerita"
                     /note="genotype: BFDV-SCC"
                     /db_xref="taxon:77856"
                     /isolate="BFDV_AUS_SCC_06_854"
                     /organism="Beak and feather disease virus"
     gene            135..1004
                     /gene="Rep"
     CDS             135..1004
                     /codon_start=1
                     /protein_id="AHX56412.1"
                     /gene="Rep"
                     /translation="MPSKEGSGCRRWCFTLNNPTDGEIEFVRTLGPDEFYYAIVGREK
                     GEQGTPHLQGYFHFKNKKRLSALKKMLPRAHFERAKGSDADNEKYCSKEGDVILTLGI
                     VARDGHRAFDGAVAAVMSGRKMKEVAREFPDIYVRHGRGLHNLSLLVGSRPRDFKTEV
                     DVIYGPPGCGKSRWANEQPGTKYYKMRGEWWDGYDGEDVVILDDFYGWLPYCEMLRLC
                     DRYPHKVPVKGAFVEFTSKRIVITSNKPPETWYKEDCDPKPLFRTFTPVWWYHIDKLE
                     QVRADLLAHPINY"
                     /product="putative replication-associated protein"
     gene            complement(1239..1985)
                     /gene="Cap"
     CDS             complement(1239..1985)
                     /codon_start=1
                     /protein_id="AHX56413.1"
                     /gene="Cap"
                     /translation="MWGTSNCACATFQVRRRYARPYRRRHIRRYRYRQRRRHFRRRRF
                     TTNRLYTIRLKREFKFDINKQTTQTGQIIWKSDYVTFALSDFLTGPNPTGWPFEDYRI
                     KLAKMEMKPTWGHSYTNSEGFGHTAVIQDSRISKFKTTADQTQDPLAPFDGARKWYLN
                     KGFKRLLRPKPQLTINDLTTVNQSATLWLNSTRTGWIPLQGGPNTAGTKVKHYGLAFS
                     FPQPQTKITYECILTVYVQFRQFAPNNPST"
                     /product="putative capsid protein"
ORIGIN      
        1 tattacccgc cgcctggggc accggggcac cgcagccatt ggctgctgag cccaggtgcc
       61 cgcccctact agggaggagg aaatgacgcc gtaaggcgtc gtaagctccg aaggatcaca
      121 ctcgcccggg aaccatgccg tccaaggagg gctctggttg tcgccgttgg tgcttcaccc
      181 tgaacaaccc cacagacggc gagatcgaat tcgtccgtac tctcgggcct gacgaattct
      241 actatgccat cgttggacgg gaaaaaggcg agcaaggtac cccccatctg caaggctact
      301 ttcattttaa aaataagaag cgactgagcg cgcttaaaaa aatgctgccc cgagctcatt
      361 ttgagcgcgc taaagggagc gacgcggata atgagaagta ttgcagtaaa gagggggacg
      421 ttatacttac cctgggcatt gtggcgagag acggtcaccg cgctttcgac ggagctgttg
      481 ctgccgtgat gtccggacgc aaaatgaagg aagtcgcgcg agagttcccg gatatctacg
      541 tcaggcatgg gcggggcttg cataacctct cgctattggt cggatcccgc ccacgtgatt
      601 tcaagactga ggttgacgtc atctacgggc caccggggtg tggcaagagt agatgggcca
      661 atgagcagcc tgggactaaa tattataaaa tgcggggtga atggtgggat ggatatgatg
      721 gtgaagatgt cgtcatcttg gacgacttct atgggtggct accttattgc gagatgctcc
      781 gcctctgcga ccgttaccca cataaggtgc cagtcaaggg cgcctttgtg gagtttacga
      841 gcaagaggat tgttatcacg agcaataagc cccccgagac ctggtacaag gaggactgtg
      901 acccgaagcc actgttccgc acattcacac ctgtttggtg gtaccacata gacaagttgg
      961 aacaagtccg ggctgatttg ctcgcccacc ccatcaatta ttgatagtcc cggtgatgtt
     1021 ttaataaagt taggcgtcgg gccgaaggcc cgatgccgca tggcgggacg ccgtgccgga
     1081 gggttcgcag ggccgtcagg cccgagaacc cgaccagccc ggagggcgaa gtcagtgtcg
     1141 gggggggggc cccggggggt ccccccgaca cgacgaacac ggtcagcgcc gaaggcgcca
     1201 ataaacactc aaaacggaat ttgttgtctg agtctttatt aagtgctggg attgttcggg
     1261 gcaaactgac ggaattgaac atacacagtg agaatgcatt cataagtgat ctttgtttgt
     1321 ggctgaggga agctgaatgc aaggccgtag tgcttgactt tcgttcctgc tgtgttgggt
     1381 cctccttgta gtgggatcca tccggttctg gtgctgttca gccacaatgt tgcagactgg
     1441 ttcactgtgg tcaggtcgtt tattgtgagt tgtggtttag gtctgaggag gcgtttgaat
     1501 cccttgttaa gataccactt tctggcaccg tcgaaaggtg ccagcgggtc ttgtgtttgg
     1561 tctgcagtag tcttaaattt agatattctg gagtcttgga ttacggccgt gtggccgaat
     1621 ccttctgaat tagtgtatga gtggccccat gtgggcttca tttccatttt agctaacttt
     1681 atccggtaat cttcgaaggg ccaacctgtt gggttcggtc ctgttaggaa gtctgacaat
     1741 gcaaaggtta cgtagtcaga cttccaaata atttggccag tttgggtggt ttgtttgttt
     1801 atatcgaatt tgaattcgcg tttgagtcta atagtgtaaa gcctattggt tgtgaaacgg
     1861 cgtctgcgga agtgtctacg tcgctggcgg tatcggtatc gcctgatgtg acgtctgcgg
     1921 tatgggcggg catatcttcg tctaacctga aatgtagcgc atgcgcagtt agaggtgccc
     1981 cacaggctta g
//