LOCUS       KF385419                1995 bp    DNA     circular VRL 08-JUL-2014
DEFINITION  Beak and feather disease virus isolate BFDV_AUS_SCC_W16710,
            complete genome.
ACCESSION   KF385419
VERSION     KF385419.1
KEYWORDS    .
SOURCE      Beak and feather disease virus
  ORGANISM  Beak and feather disease virus
            Viruses; ssDNA viruses; Circoviridae; Circovirus.
REFERENCE   1  (bases 1 to 1995)
  AUTHORS   Sarker,S., Ghorashi,S.A., Forwood,J.K., Bent,S.J., Peters,A. and
            Raidal,S.R.
  TITLE     Phylogeny of beak and feather disease virus in cockatoos
            demonstrates host generalism and multiple-variant infections
            within Psittaciformes
  JOURNAL   Virology 460-461, 72-82 (2014)
   PUBMED   25010272
REFERENCE   2  (bases 1 to 1995)
  AUTHORS   Sarker,S., Ghorashi,S.A., Forwood,J.K. and Raidal,S.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUL-2013) School of Animal and Veterinary Sciences,
            Charles Sturt University, Locked Bag 588, Boorooma street, Wagga
            Wagga, NSW 2650, Australia
COMMENT     ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy
            sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1995
                     /mol_type="genomic DNA"
                     /country="Australia"
                     /isolation_source="feather; liver"
                     /collection_date="2010"
                     /host="Cacatua galerita"
                     /note="genotype: BFDV-SCC"
                     /db_xref="taxon:77856"
                     /isolate="BFDV_AUS_SCC_W16710"
                     /organism="Beak and feather disease virus"
     gene            135..1004
                     /gene="Rep"
     CDS             135..1004
                     /codon_start=1
                     /protein_id="AHX56422.1"
                     /gene="Rep"
                     /translation="MPSKEGSGCRRWCFTLNNPTDGEIEFVRTLGPDEFYYAIVGREK
                     GEQGTPHLQGYFHFKNKKRLSALKKMLPRAHFERAKGSDSDNEKYCSKEGDVILTLGI
                     VARDGHRAFDGAVAAVMSGRKMKEVAREFPEVYVRHGRGLHNLSLLVGSRPRDFKTEV
                     DVIYGPPGCGKSRWANEQPGTKYYKMRGEWWDGYDGEDVVILDDFYGWLPYCEMLRLC
                     DRYPHKVPVKGAFVEFTSKRIIITSNKPPETWYKEDCDPKPLFRRFTRVWWYHADKLE
                     QVRADFLAHPINY"
                     /product="putative replication-associated protein"
     gene            complement(1239..1967)
                     /gene="Cap"
     CDS             complement(1239..1967)
                     /codon_start=1
                     /protein_id="AHX56423.1"
                     /gene="Cap"
                     /translation="MRMRHFQIRRRYARPYRRRHIRRYRYRQRRRHFRRRRFTTNRLY
                     TIRLKREFKFDINKQTTQTGQIIWNSDYVTFALSDFLTAPNPTGWPFEDYRIKLAKME
                     MKPTWGHSYTNSEGFGHTAVIQDSRISKFKTTADQTQDPLAPFDGARKWYLNKGFKRL
                     LRPKPQITINDLTTVNQSAALWLNSTRTGWIPLQGGPNTAGTKVRHYGLAFSFPQPQT
                     KITYECILTIYVQFRQFSPNNPST"
                     /product="putative capsid protein"
ORIGIN      
        1 tattacccgc cgcctggggc accggggcac cgcagccatt ggctgccgtg ccccaggtgc
       61 ccgcccctac tagggaggag gaaatgacgc cgaaggcgtc gtaagctccg aaggatcaca
      121 ctcggccggg aaccatgccg tccaaggagg gctctggctg tcgccgttgg tgctttaccc
      181 tgaacaatcc tacagacggc gagatcgaat tcgtccgtac tctcgggcct gacgaattct
      241 actatgccat cgttggacgg gaaaaaggcg agcaaggtac cccccatcta caaggctact
      301 ttcattttaa aaataagaag cgactgagcg cgcttaagaa aatgctgccc cgagctcatt
      361 ttgagcgcgc taaagggagc gattcggata atgagaagta ttgcagtaaa gagggggacg
      421 tgatacttac cctgggcatt gtggcgagag acggtcaccg cgctttcgac ggagctgttg
      481 ctgccgtgat gtccggacgc aaaatgaagg aagtcgcgcg agagttccca gaagtctacg
      541 taagacatgg gcggggcttg cataacctct cgctattggt cggttcccgc ccacgtgact
      601 tcaagactga ggttgacgtc atctacgggc cacctgggtg tggcaagagt agatgggcca
      661 atgagcagcc tgggactaaa tattataaaa tgcgcggtga atggtgggat ggatatgatg
      721 gggaagatgt cgtcatcttg gacgactttt atgggtggct gccttattgc gagatgctcc
      781 gcctctgcga ccgttaccca cataaggtgc cagtgaaggg cgcctttgtg gagtttacga
      841 gcaagaggat tattattacg agcaataagc cccccgagac ctggtacaag gaggactgtg
      901 acccgaagcc actgttccgg agatttacac gtgtttggtg gtaccacgca gacaagttgg
      961 aacaagtccg ggctgatttc ctcgcccacc ccatcaatta ttgatagtct cggtgatgtt
     1021 ttaataaagt taggcgtcgg gccgaaggcc cgatgccgca tggcgggacg ccgtgccgga
     1081 ggggtcgcag ggccgtcagg cccgagaccc cgaccagccc ggagggccta gtcagtgtcg
     1141 gggggggggc cccggggggt ccccccgaca cgacgaacac ggtcagcgcc gaaggcgcca
     1201 ataaacactc ggaaacgtat ttgctgtctg agtctttatt aagtgctggg attgttcggg
     1261 gaaaactggc ggaattgaac atagatggtg agaatgcatt cataagtgat ctttgtttgt
     1321 ggctgcggga agctgaatgc aaggccgtag tgcctgacct tcgttcctgc tgtgttgggt
     1381 cctccttgta gtgggatcca tccggttctg gtgctgttca gccacaatgc tgcagactgg
     1441 ttcaccgtgg tcaggtcgtt tattgtgatt tgtggtttag gtctgaggag gcgtttgaat
     1501 cccttgttaa gataccactt tctggcaccg tcgaaaggtg ccagcgggtc ttgtgtttgg
     1561 tctgcagtag tcttaaattt acttattctg gagtcttgga ttacggccgt gtggccgaat
     1621 ccttctgaat tagtgtatga gtggccccat gtgggcttca tttccatttt agctaactta
     1681 attcggtaat cttcgaaggg ccaacctgtt gggttcggtg ctgttaggaa gtctgacaat
     1741 gcaaatgtta cgtagtcaga attccaaata atttggccag tttgggtggt ttgtttgttt
     1801 atatcgaatt tgaattcgcg tttgagtcta atagtgtaaa gtctattggt tgtgaaacgg
     1861 cgtctgcgga agtgtctacg tcgctggcgg tatcggtatc gcctgatgtg acgtctgcgg
     1921 tatgggcggg catatctacg tcgaatctga aagtggcgca tgcgcagtta gaggtgcccc
     1981 acaggcggcg gttag
//