LOCUS       JX221003                2002 bp    ss-DNA  circular VRL 23-APR-2013
DEFINITION  Beak and feather disease virus isolate BFDV-B_PL-1036_2010,
            complete genome.
ACCESSION   JX221003
VERSION     JX221003.1
KEYWORDS    .
SOURCE      Beak and feather disease virus
  ORGANISM  Beak and feather disease virus
            Viruses; ssDNA viruses; Circoviridae; Circovirus.
REFERENCE   1  (bases 1 to 2002)
  AUTHORS   Julian,L., Piasecki,T., Chrzastek,K., Walters,M., Muhire,B.,
            Harkins,G.W., Martin,D.P. and Varsani,A.
  TITLE     Extensive recombination detected among beak and feather disease
            virus isolates from breeding facilities in Poland
  JOURNAL   J. Gen. Virol. 94 (PT 5), 1086-1095 (2013)
   PUBMED   23324468
REFERENCE   2  (bases 1 to 2002)
  AUTHORS   Varsani,A., Julian,L., Piasecki,T. and Chrzastek,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUN-2012) School of Biological Sciences, University
            of Canterbury, Private Bag 4800, Christchurch, Canterbury 8014,
            New Zealand
COMMENT     ##Assembly-Data-START## Assembly Method :: DNAMAN v. 5.26
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..2002
                     /mol_type="genomic DNA"
                     /country="Poland"
                     /collection_date="12-Mar-2010"
                     /host="Psittacula krameri"
                     /note="genotype: B-B2"
                     /db_xref="taxon:77856"
                     /isolate="BFDV-B_PL-1036_2010"
                     /organism="Beak and feather disease virus"
     CDS             141..1010
                     /codon_start=1
                     /protein_id="AGC55154.1"
                     /translation="MPSKEGSGCRRWCFTLNNPTRAEIDYVCSLKPEDFHYAIVGREC
                     GEKQQTPHLQGYFHFKQKKRLSALKKMLPRAHFERAKGTDADNEKYCSKEGDVILTLG
                     IVARDGHRAFDGAVAAVLAGRRMKEVAREFPDIYVRHGRGLHNLSLLIGSQPRDFKTE
                     VDVIYGPPGCGKSKWANEQPGSKYYKMRGEWWDGYDGKDIVILDDFYGWLPYCEMLRL
                     CDRYPHKVPVKGAFVEFTSKRIIITSNKAPETWYKEDCDPKPLFRRFTRVWWYTDKLE
                     QVRPDFLAHPINF"
                     /product="replication associated protein"
     CDS             complement(1248..1979)
                     /codon_start=1
                     /protein_id="AGC55155.1"
                     /translation="MNCACATFQIRRRARPYYRRRHIRRYRRRRRYFRRRRFTTNRIY
                     TIRLKRQFKFTIQKQTTAAGTMIWNSDYITFTLSDFITNTPNPPTLNFEDYRIKLAKM
                     ELRPTNGHYTIASAGFGHTAVIQDSRITKFKTTADQTQDPLAPFDGVKKWYLSKGFKR
                     LLRPKPQLSINDLATQNQSAALWLNSVRTGWIPLQGGPNSAGTNVKHYGLAFSFPQPD
                     LLIDYVCMLTLYVQFRQFAPNNPTT"
                     /product="capsid protein"
                     /transl_except=(pos:complement(1977..1979),aa:Met)
ORIGIN      
        1 tattacccgc cgcctggggc accggggcac gtcagctatt ggctgacgag ccccgtgccc
       61 cacccccgtg ccccagccct ccctttcgcg tgtgtttttg aactgacgcc gaaggcgtca
      121 gttcccgtat tgtcaccgcc atgccgtcca aggagggctc tggttgccgc cgctggtgtt
      181 tcaccttgaa caacccaacc agagctgaga tagactacgt atgtagtctg aagcctgaag
      241 acttccatta tgccatcgtt ggacgggagt gcggtgagaa acagcaaacc cctcatttac
      301 aaggctattt tcattttaag caaaagaagc gcttaagtgc cttaaagaaa atgcttccgc
      361 gagcgcattt tgagcgagct aagggcactg atgcggataa tgagaaatat tgcagtaaag
      421 aaggcgacgt tatacttact ctgggcattg tggcgcgaga cggtcaccgc gcttttgacg
      481 gagctgttgc cgctgtgctt gccggaagaa gaatgaaaga agtcgcgcga gagttcccgg
      541 atatctacgt caggcatggg cgtggtctgc ataatctctc tcttctgatt ggctcacagc
      601 cgcgcgactt taaaactgag gttgacgtca tttatggccc tccggggtgt ggcaagagta
      661 aatgggccaa tgagcagcct gggtcaaagt actataagat gcgcggtgaa tggtgggatg
      721 gatatgacgg aaaagatatc gtcatcttgg acgactttta tgggtggcta ccttattgcg
      781 agatgctccg cctatgcgac cgttacccac ataaggtgcc agttaaaggc gcctttgtgg
      841 agtttaccag taagaggatc attatcacga gcaataaggc ccctgagacc tggtacaagg
      901 aggactgtga cccgaagcca ctgttccgga gattcactcg tgtttggtgg tacactgaca
      961 agttggaaca agtccggcct gatttccttg cccaccccat caatttttga taccccccgg
     1021 aggttattaa taaaagccgg ccgtcgggcc gaaggcccga tggcgcaggg cgggacgccc
     1081 tgccggaggg ctcgcagggc cgtcaggccc gagagcccga ccagcccgga gggcctcgtc
     1141 tgtgtcgggg gggggggccc caggggggtc cccccgacac gaccaacatg gtcagcgccg
     1201 aaggcgccaa taaacactcg aaaaggtatt tgccgtttga gtctttatta agtggtggga
     1261 ttattggggg caaattgacg gaattgaaca tacagagtta gcatgcatac ataatcgata
     1321 agtaaatctg gctgagggaa gctgaaggca aggccgtagt gcttgacgtt cgtgcctgcc
     1381 gagttgggtc ctccttgtag tgggatccag ccggttctga cgctgtttag ccacaatgct
     1441 gcagactggt tctgtgtggc taggtcgttt attgatagtt gtggtttcgg cctgaggagg
     1501 cgtttgaatc ccttgctaag ataccatttt tttacaccgt cgaaaggtgc cagcgggtct
     1561 tgtgtttggt ctgcagtagt tttaaattta gttattcgtg aatcttggat tacggccgtg
     1621 tggccgaatc ctgctgaagc aatggtgtag tgaccatttg tgggcctcag ttccatttta
     1681 gctaacttaa tcctgtagtc ttcgaaatta agtgttggtg gattcggtgt gttcgttatg
     1741 aagtctgaca atgtaaatgt tatgtagtca gaattccaaa tcatagtgcc cgcagcggta
     1801 gtctgtttct gaatggtgaa tttgaattgg cgtttgagtc tgatcgtgta aattctattg
     1861 gttgtgaatc ggcgtctgcg gaagtatcta cgtcgccggc ggtatctccg gatgtgacgt
     1921 ctgcggtagt atgggcgggc tcttcgtcta atctgaaatg tagcgcatgc gcagttagag
     1981 gtgccccaca ggcggcggtt ag
//