LOCUS       JX221042                1994 bp    ss-DNA  circular VRL 23-APR-2013
DEFINITION  Beak and feather disease virus isolate BFDV-I_PL-830_2009,
            complete genome.
ACCESSION   JX221042
VERSION     JX221042.1
KEYWORDS    .
SOURCE      Beak and feather disease virus
  ORGANISM  Beak and feather disease virus
            Viruses; ssDNA viruses; Circoviridae; Circovirus.
REFERENCE   1  (bases 1 to 1994)
  AUTHORS   Julian,L., Piasecki,T., Chrzastek,K., Walters,M., Muhire,B.,
            Harkins,G.W., Martin,D.P. and Varsani,A.
  TITLE     Extensive recombination detected among beak and feather disease
            virus isolates from breeding facilities in Poland
  JOURNAL   J. Gen. Virol. 94 (PT 5), 1086-1095 (2013)
   PUBMED   23324468
REFERENCE   2  (bases 1 to 1994)
  AUTHORS   Varsani,A., Julian,L., Piasecki,T. and Chrzastek,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUN-2012) School of Biological Sciences, University
            of Canterbury, Private Bag 4800, Christchurch, Canterbury 8014,
            New Zealand
COMMENT     ##Assembly-Data-START## Assembly Method :: DNAMAN v. 5.26
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1994
                     /mol_type="genomic DNA"
                     /country="Poland"
                     /collection_date="26-Mar-2009"
                     /host="Alexandrine parakeet"
                     /note="genotype: I4"
                     /db_xref="taxon:77856"
                     /isolate="BFDV-I_PL-830_2009"
                     /organism="Beak and feather disease virus"
     CDS             135..1001
                     /codon_start=1
                     /protein_id="AGC55232.1"
                     /translation="MPSKEGSGCRRWCFTLNNPTDGEIEFVRSLGPDEFYYAIVGRER
                     GEQGTPHLQGYFHFKNKKRLSALKKMMPRGHFERAKGSDAENEKYCSKEGDVILTLGI
                     VARDGHRAFDGAVAAVMSGRKMKEVAREFPDIYVRHGRGLHSLSLMVGSRPRDFKTEV
                     DVIYGPPGCGKSRWANEQPGTKYYKMRGEWWDGYDGEDVVILDDFYGWLPYCEMLRLC
                     DRYPHKVPVKGAFVEFTSKRIIITSNKPPETWYKEDCDPKPLFRRFTRVWWYTDKLEQ
                     VRPDFLAHPINF"
                     /product="replication associated protein"
     CDS             complement(1234..1971)
                     /codon_start=1
                     /protein_id="AGC55233.1"
                     /translation="MNCACATFQIRRRWTRPYYRRRHIRRYRRRRIYFRKRRFTTNRI
                     YTLRFKRQFKFQIQKQTTSTGNVIWNSDYITFALSDFLNTPNPPTLNFEDYRIKLAKM
                     EMRPTWGHYSISSDGFGHTAVIQDSRITKFKTTADQTQDPVAPFDGAKKWYVSRGFKR
                     LLRPKPQITIDDLTTANQSAALWLNSTRTGWIPLQGGPNAAGAKVKHYGLAFSFPQPE
                     VTITYVCQLTLYVQFRQFAPNNPNPTQ"
                     /product="capsid protein"
                     /transl_except=(pos:complement(1969..1971),aa:Met)
ORIGIN      
        1 tattacccgc cgcctggggc accggggcac cgcagccatt ggctgccttg cccatgtgcc
       61 cgcccctagg gaggagtaaa tggcgccgtt atacggcgcc gtaatctccg gaggatcata
      121 ctcctccaat aaccatgccg tccaaggagg ggtctggctg tcgccgttgg tgtttcaccc
      181 ttaacaaccc tacagacggc gagatagaat tcgtccgttc tctcgggcct gacgaattct
      241 actatgccat cgttggacgg gaaaggggcg agcaaggtac cccccatctg caaggctact
      301 ttcattttaa aaataagaag cgactgagcg cgcttaagaa aatgatgccg cgaggacatt
      361 ttgagcgtgc taaagggagc gatgcggaga atgagaagta ttgcagtaag gagggggatg
      421 taatacttac ccttggcatt gtggcgagag acggtcaccg cgctttcgac ggagctgttg
      481 ctgccgtgat gtccggacgc aaaatgaagg aagtcgcgcg agagttcccg gatatctacg
      541 taaggcatgg gcggggcttg catagtctct cgctaatggt tggttcccgc ccacgtgact
      601 tcaagactga ggtcgacgtc atctacggac caccggggtg tggcaagagt agatgggcca
      661 atgagcagcc ggggaccaaa tattataaaa tgcgcggtga atggtgggat ggatatgatg
      721 gggaagatgt cgtcattttg gacgactttt atgggtggct accttattgc gagatgctcc
      781 gcctctgcga ccgctaccca cacaaagtgc cagtaaaggg tgcttttgtg gagtttacga
      841 gcaagaggat aattatcacg agcaataagc cccccgagac ctggtacaag gaggactgtg
      901 acccgaagcc actgttccgg agattcactc gtgtttggtg gtacactgac aagttggaac
      961 aagtccggcc tgatttcctc gcccacccca tcaatttttg atcgtttcgg tgatgtttaa
     1021 taaatttagg cgtcgggccg aaggcccgat gccgcagggg gggaccccct gccggagggt
     1081 tcgcagggcc gttaggcccg agaacccgac cagcccggag ggcctcgtct gtgtcggggg
     1141 gggggccccg gggggtcccc ccgacaagaa aaccacacac gtagcgccga aggcgccaat
     1201 aaacactcga aaaggtattt ggtgtttgag tctttattga gtggggtttg gattgttagg
     1261 agcaaactga cggaattgaa catataaagt gagctggcat acatatgtga tcgttacttc
     1321 tggctgaggg aagctgaagg caaggccgta gtgcttgacc ttcgctcctg ctgcgttggg
     1381 tcctccttgt agtgggatcc agccggttct ggtgctgttt agccataatg ccgcagactg
     1441 gtttgctgtg gtgaggtcgt ctatcgttat ttgtggtttc ggtcggagga ggcgtttgaa
     1501 tcccctgcta acataccatt ttttggcacc gtcgaaaggt gccaccgggt cttgtgtttg
     1561 gtctgcagta gttttaaatt tagttattct ggaatcttgg attacggccg tgtggccgaa
     1621 tccgtctgaa ctaatgctgt agtggcccca tgtgggcctc atttccattt tagctaactt
     1681 aatccggtag tcttcgaaat tcagtgttgg tgggtttggt gtgtttagga agtctgacaa
     1741 tgcaaaggtt atgtagtcag aattccaaat tacattgcca gtactggtgg tttgtttttg
     1801 aatttggaat ttgaattggc gtttgaatct gagagtgtaa attctattgg ttgtgaaacg
     1861 gcgtttgcgg aagtatatac gtcgccggcg gtaacgcctg atgtgacgtc tgcggtagta
     1921 tgggcgggtc catcttcgtc taatctgaaa tgtagcgcat gcgcagttag aggtgcccca
     1981 caggcggcgg ttag
//