LOCUS       JX221006                1999 bp    ss-DNA  circular VRL 23-APR-2013
DEFINITION  Beak and feather disease virus isolate BFDV-J_PL-1229_2010,
            complete genome.
ACCESSION   JX221006
VERSION     JX221006.1
KEYWORDS    .
SOURCE      Beak and feather disease virus
  ORGANISM  Beak and feather disease virus
            Viruses; ssDNA viruses; Circoviridae; Circovirus.
REFERENCE   1  (bases 1 to 1999)
  AUTHORS   Julian,L., Piasecki,T., Chrzastek,K., Walters,M., Muhire,B.,
            Harkins,G.W., Martin,D.P. and Varsani,A.
  TITLE     Extensive recombination detected among beak and feather disease
            virus isolates from breeding facilities in Poland
  JOURNAL   J. Gen. Virol. 94 (PT 5), 1086-1095 (2013)
   PUBMED   23324468
REFERENCE   2  (bases 1 to 1999)
  AUTHORS   Varsani,A., Julian,L., Piasecki,T. and Chrzastek,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUN-2012) School of Biological Sciences, University
            of Canterbury, Private Bag 4800, Christchurch, Canterbury 8014,
            New Zealand
COMMENT     ##Assembly-Data-START## Assembly Method :: DNAMAN v. 5.26
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1999
                     /mol_type="genomic DNA"
                     /country="Poland"
                     /collection_date="Nov-2011"
                     /host="Platycercus elegans"
                     /note="genotype: J4"
                     /db_xref="taxon:77856"
                     /isolate="BFDV-J_PL-1229_2010"
                     /organism="Beak and feather disease virus"
     CDS             131..1000
                     /codon_start=1
                     /protein_id="AGC55160.1"
                     /translation="MPSKEGSGCRRWCFTLNNPTDGEIEFVRTLGPDEFYYAIVGREK
                     GEQGTPHLQGYFHFKNKKRLSALKKMLPRGHFERAKGSDADNEKYCSKEGEVIPTLGI
                     VARDGHRAFDGAVAAVMSGRKMKEVAREFPDIYVRHGRGLHNLSLLVGSRPRDFKTEV
                     DVIYGPPGCGKSRWANEQPGTKYYKMRGEWWDGYDGEDVVVLDDFYGWLPYCEMLRLC
                     DRYPLKVPVKGAFVEFTSKRIIITSNKPPETWYKEDCDPKPLFRRFTRVWWYNIDKLE
                     QVRPDFLAHPINF"
                     /product="replication associated protein"
     CDS             complement(1239..1976)
                     /codon_start=1
                     /protein_id="AGC55161.1"
                     /translation="MNCACATFQIRRRYARPFYRRRHIRRYRLRRRRHFRRRRFTTNR
                     IYTLRFKRQFKFQINKNTTQPNNVIWNSDYITFTLSDFLTNTPNPPTLNFEDYRIKLA
                     KMEMRPTLGHYTISADGFGHTAIIQDSRITKFKTTADQSQDPLAPFDGSKKWFISRGF
                     KRLLRPKPQITINDLSTANQSAALWLNSVRTGWIPLQGGPNAAGANVKHYGLAFSFPQ
                     PEATITYVCQLTLYVQFRQFAPNNPST"
                     /product="capsid protein"
                     /transl_except=(pos:complement(1974..1976),aa:Met)
ORIGIN      
        1 tattacccgc cgcctggggc accggggcac cgcagccatt ggctgcagtg gcccgtgccc
       61 gcccctaggg aggagaaaat gacgccgtta ggcgtcgtaa tctccggagg atcacactcg
      121 cccgggaact atgccgtcca aggaggggtc tggctgtcgc cgttggtgtt tcacccttaa
      181 caaccctacc gacggcgaga tcgaattcgt ccgtactctc gggcctgacg aattctacta
      241 tgccatcgtt ggacgggaaa agggcgagca aggtaccccc catttgcaag gctactttca
      301 ttttaaaaat aagaagcgac tgagcgcgct taagaaaatg ctgccgcgag gtcattttga
      361 gcgcgctaaa gggagcgatg cggataatga gaagtattgc agtaaagagg gcgaggtgat
      421 acctaccctg ggcattgtgg cgagagacgg tcaccgcgct ttcgacggag ctgttgctgc
      481 cgtgatgtcc ggacgcaaaa tgaaggaagt cgcgcgagag ttcccagata tctacgtcag
      541 acatgggcgg ggcctgcata acctgtcgtt attggttggt tcccgcccac gtgatttcaa
      601 gacggaggtt gacgtaatct acgggccacc ggggtgtggc aagagtagat gggccaatga
      661 acagccgggg actaaatatt ataaaatgcg cggtgaatgg tgggatgggt atgatgggga
      721 agatgtcgtc gtattggacg acttttatgg gtggttacct tattgcgaga tgctccgcct
      781 ttgcgaccgt taccctctta aagtgccagt taaaggcgct tttgtggagt ttaccagcaa
      841 gaggatcatt atcacgagca ataagccccc cgagacgtgg tacaaggagg actgtgaccc
      901 gaagccactg ttccggagat tcactcgtgt ttggtggtat aacattgaca agttggaaca
      961 agtccggcct gatttcctcg cccaccccat caatttttga cagtcccggt gatgattaat
     1021 aaaagccagg cgtcgggccg aaggcccgat gccgcatggg gggaccccat gccggagggc
     1081 tcggagggcc gtcaggcccg agagcccgac cagtccggag gactaatgtc tgtgtcgggg
     1141 gggggggccc ccggggggtc cccccgacac gacgagcacg gtagcgccga aggcgctgta
     1201 ataaaaactc gaaaaggtat ttgttgtttg agtctttatt aagtgctggg attgttaggg
     1261 gcaaactgac ggaattgaac atacaaagtg agctgacata cataagtgat cgttgcttct
     1321 ggctgcggga agctgaaggc aaggccgtag tgcttgacgt tcgctcctgc cgcgttgggt
     1381 cctccttgta gtgggatcca gccggttctg acgctgttca gccacaatgc tgcagactgg
     1441 ttagctgtgc tcaggtcgtt tatagttatt tgtggtttcg gtctgaggag gcgtttgaat
     1501 cccctgctaa taaaccactt tttggaaccg tcgaagggtg ccaatgggtc ttgtgattgg
     1561 tctgcagtag ttttaaattt agttattctg gagtcttgga ttatggccgt gtggccgaat
     1621 ccgtctgcac taatggtgta gtgacccaat gttggcctca tttccatttt agctaactta
     1681 attcggtagt cttcgaaatt cagtgttggt gggttcggtg tgtttgttag gaagtctgac
     1741 aatgtaaagg ttatatagtc agaattccaa attacgttgt taggttgtgt ggtgtttttg
     1801 ttaatttgga atttgaattg gcgtttgaat ctgagagtgt aaattctatt ggttgtgaaa
     1861 cggcgtctgc ggaagtgtct acgtcgccgt aggcggtatc gcctgatgtg acgtcgacgg
     1921 tagaatgggc gggcatatct tcgtctaatc tgaaatgtag cgcatgcgca gttagaggtg
     1981 ccccacaggc ggcggttag
//