LOCUS       JX221031                2001 bp    ss-DNA  circular VRL 23-APR-2013
DEFINITION  Beak and feather disease virus isolate BFDV-J_PL-571_2008,
            complete genome.
ACCESSION   JX221031
VERSION     JX221031.1
KEYWORDS    .
SOURCE      Beak and feather disease virus
  ORGANISM  Beak and feather disease virus
            Viruses; ssDNA viruses; Circoviridae; Circovirus.
REFERENCE   1  (bases 1 to 2001)
  AUTHORS   Julian,L., Piasecki,T., Chrzastek,K., Walters,M., Muhire,B.,
            Harkins,G.W., Martin,D.P. and Varsani,A.
  TITLE     Extensive recombination detected among beak and feather disease
            virus isolates from breeding facilities in Poland
  JOURNAL   J. Gen. Virol. 94 (PT 5), 1086-1095 (2013)
   PUBMED   23324468
REFERENCE   2  (bases 1 to 2001)
  AUTHORS   Varsani,A., Julian,L., Piasecki,T. and Chrzastek,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUN-2012) School of Biological Sciences, University
            of Canterbury, Private Bag 4800, Christchurch, Canterbury 8014,
            New Zealand
COMMENT     ##Assembly-Data-START## Assembly Method :: DNAMAN v. 5.26
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..2001
                     /mol_type="genomic DNA"
                     /country="Poland"
                     /collection_date="14-Apr-2008"
                     /host="Poicephalus senegalus"
                     /note="genotype: J1"
                     /db_xref="taxon:77856"
                     /isolate="BFDV-J_PL-571_2008"
                     /organism="Beak and feather disease virus"
     CDS             135..1004
                     /codon_start=1
                     /protein_id="AGC55210.1"
                     /translation="MPSKEGSGCRRWCFTLNNPTDGEIEFVRTLGPDEFYYAIVGREK
                     GEQGTPHLQGYFHFKNKKRLSALKKLLPRAHFERAKGSDADNEKYCSKEGDVILTLGI
                     VARDGHRAFDGAVAAVMSGRKMKEVAREFPDIYVRHGRGLHNLSLLVGSRPRDFKTEV
                     DVLYGPPGCGKSRWANEQPGTKYYKMRGEWWDGYDGEEVVVLDDFYGWLPYCELLRLC
                     DRYPHKVPVKGAFVEFTSKRIIITSNKPPETWYKEDCDPKPLFRRFTRVWWYNVDKLE
                     QVRPDFLAHPINF"
                     /product="replication associated protein"
     CDS             complement(1241..1978)
                     /codon_start=1
                     /protein_id="AGC55211.1"
                     /translation="MNCACATFQIRRRYARPYYRRRHIRRYRLRRRRHFRKRRFTTNR
                     IYTLRFKRQFKFQINKNTTQPSNVIWNSDYITFTLSDFLTNTPNPPTLNFEDYRIKLA
                     KMEMRPTWGHYTISSDGFGHTAVIQDSRITKFKTTADQTQDPLAPFDGSKKWFISRGF
                     KRLLRPKPQITINDLSTANQSAALWLNSVRTGWIPLQGGPNAAGANVKHYGLAFSFPQ
                     PEVTITYVCQLTLYVQFRQFAPNNPST"
                     /product="capsid protein"
                     /transl_except=(pos:complement(1976..1978),aa:Met)
ORIGIN      
        1 tattacttgc cgactgcggc accggggcac cgcagccatt ggctgcggtg ccccaacccc
       61 tcccactagg gcggagagaa tggcgccgtt atacggcgcc gtgatctccg gaggatcaca
      121 ctcgctcggg aaccatgccg tccaaggagg gctctggctg tcgccgttgg tgtttcaccc
      181 ttaacaatcc tacagacggc gagatcgaat tcgtccgtac tctcgggcct gacgaattct
      241 attatgccat cgttggacgg gaaaagggcg agcaaggtac cccccatttg caaggctact
      301 ttcattttaa aaataagaag cgactgagcg cgcttaagaa attgctgccg cgagctcatt
      361 ttgagcgcgc taaagggagc gatgcggaca atgagaagta ttgcagtaaa gagggggatg
      421 tgatacttac cctgggcatt gtggcgagag acggtcaccg cgctttcgac ggagctgttg
      481 ctgccgtgat gtccggacgc aaaatgaagg aagtcgcgcg agagttccca gatatctacg
      541 tcaggcatgg gcggggcttg cataacctct cgctattggt tggttcccgc ccacgtgatt
      601 tcaagactga ggttgacgtc ctctacggac caccggggtg tggcaaaagt agatgggcca
      661 atgagcagcc tgggactaaa tattataaaa tgcgcggtga atggtgggat ggatatgatg
      721 gggaggaagt cgtcgtattg gacgattttt atgggtggct accttattgc gagctgctcc
      781 gcctctgcga ccgttaccca cataaagtgc cagttaaggg cgcgtttgtg gagtttacga
      841 gcaagaggat cattattacg agcaataagc ccccagagac ctggtacaag gaggactgtg
      901 acccgaagcc actcttccgg agattcactc gtgtttggtg gtataatgtg gacaagttgg
      961 aacaagtccg gcctgatttc ctcgcccacc ccatcaattt ttagagcgtc tcggtgatga
     1021 ttaaaaaaag ccgggcgtca ggccgaaggc ctgatgccgc agggcgggac gccctgccgg
     1081 agggctcgca gggccgtcag gcccgagagc ccgaccagcc cggagggcct cgtctgtgtt
     1141 cggggggggg gccccggggg gtccccccga cacgaccaac acggtagcgc cgaaggcgcc
     1201 aaataaacac tcgaaaaggt atttgttgtc tgagtcttta ttaagtgctg ggattgttag
     1261 gggcaaactg acggaattga acatacaaag tgagctgaca tacataagtg atcgttactt
     1321 ctggctgcgg gaagctgaag gcaaggccgt agtgcttgac gttcgctcct gccgcgttgg
     1381 gtcctccttg tagtgggatc cagccggttc tgacgctgtt cagccacaat gctgcagact
     1441 ggttcgctgt gctcaggtcg tttattgtta tttgtggttt cggtctgagg aggcgtttga
     1501 atcccctgct gataaaccat tttttggaac cgtcgaaagg tgccaatggg tcttgtgttt
     1561 ggtctgcagt agttttaaat ttagttattc tggagtcttg gattacggcc gtgtggccga
     1621 atccgtctga actaatggtg tagtggcccc atgtgggtct catttccatt ttagctaact
     1681 taattcggta gtcttcgaaa ttaagtgttg gtgggttcgg tgtgtttgtt aggaagtctg
     1741 ataatgtaaa ggttatatag tcagaattcc aaattacgtt gctaggttgt gtggtgtttt
     1801 tgttaatttg gaatttgaac tggcgtttga atctgagagt gtaaattcta ttggttgtga
     1861 aacggcgttt gcggaagtgt ctacgtcgtc gtaggcggta tcgcctgatg tgacgtctac
     1921 ggtagtatgg gcgggcatat cttcgtctaa tctgaaatgt agcgcatgcg cagttagagg
     1981 tgccccaacg gcgggggtta g
//