LOCUS       JX221035                1998 bp    ss-DNA  circular VRL 23-APR-2013
DEFINITION  Beak and feather disease virus isolate BFDV-J_PL-683_2008,
            complete genome.
ACCESSION   JX221035
VERSION     JX221035.1
KEYWORDS    .
SOURCE      Beak and feather disease virus
  ORGANISM  Beak and feather disease virus
            Viruses; ssDNA viruses; Circoviridae; Circovirus.
REFERENCE   1  (bases 1 to 1998)
  AUTHORS   Julian,L., Piasecki,T., Chrzastek,K., Walters,M., Muhire,B.,
            Harkins,G.W., Martin,D.P. and Varsani,A.
  TITLE     Extensive recombination detected among beak and feather disease
            virus isolates from breeding facilities in Poland
  JOURNAL   J. Gen. Virol. 94 (PT 5), 1086-1095 (2013)
   PUBMED   23324468
REFERENCE   2  (bases 1 to 1998)
  AUTHORS   Varsani,A., Julian,L., Piasecki,T. and Chrzastek,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUN-2012) School of Biological Sciences, University
            of Canterbury, Private Bag 4800, Christchurch, Canterbury 8014,
            New Zealand
COMMENT     ##Assembly-Data-START## Assembly Method :: DNAMAN v. 5.26
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1998
                     /mol_type="genomic DNA"
                     /country="Poland"
                     /collection_date="15-Oct-2008"
                     /host="Platycercus eximius"
                     /note="genotype: J4"
                     /db_xref="taxon:77856"
                     /isolate="BFDV-J_PL-683_2008"
                     /organism="Beak and feather disease virus"
     CDS             132..1001
                     /codon_start=1
                     /protein_id="AGC55218.1"
                     /translation="MPSKEGSGCRRRCFTLNNPTDGEIEFVRTLGPDEFYYAIVGREK
                     GEQGTPHLQGYFHFKNKKRLSALKKMLPRAHFERAKGSDADNEKYCSKEGDVILTLGI
                     VARDGHRAFDGAVAAVMSGRKMKEVAREFPDIYVRHGRGLHNLSLLVGSRPRDFKTEV
                     DVIYGPPGCGKSRWANEQPGTKYYKMRGEWWDGYDGEDVVVLDDFYGWLPYCEMLRLC
                     DRYPHKVPVKGAFVEFTSKRIIITSNKPPETWYKEDCDPKPLFRRFTRVWWYNIDKLE
                     QVRPDFLAHPINF"
                     /product="replication associated protein"
     CDS             complement(1238..1975)
                     /codon_start=1
                     /protein_id="AGC55219.1"
                     /translation="MNCACATFQIRRRYARPYYRRRHIRRYRLRRRRHFRRRRFTTNR
                     IYTLRFKRQFKFQINKNTTQPSNVIWNSDYITFTLSDFLTNTPNPPTLNFEDYRIKLA
                     KMEMRPTWGHYTISSDGFGHTAVIQDSRITKFKTTADQTQDPLAPFDGSKKWFISRGF
                     KRLLRPKPQITINDLSTANQSAALWLNSVRTGWIPLQGGPNAAGANVKHYGLAFSFPQ
                     PEVTITYVCQLTLYVQFRQFAPNNPST"
                     /product="capsid protein"
                     /transl_except=(pos:complement(1973..1975),aa:Met)
ORIGIN      
        1 tattacccgc cgcctggggc accggggcac ctcagccatt ggctgcaggt ccccggtgcc
       61 cgcccctagg gaggagaaaa tgacgccgtt aggcgtcgta atctccggag gatcacactc
      121 gcccgggaac tatgccgtcc aaggagggct ctggctgtcg ccgtcggtgt ttcaccctta
      181 acaaccctac agacggcgag atcgaattcg tccgtactct cgggcctgac gaattctact
      241 atgccatcgt tggacgggaa aagggcgagc aaggtacccc ccatttgcaa ggctactttc
      301 attttaaaaa taagaagcga ttgagcgcgc ttaagaaaat gctgccgcga gctcatttcg
      361 agcgtgctaa agggagcgat gcggataatg agaagtattg cagtaaagag ggcgacgtta
      421 tacttaccct gggcattgtg gcgagagacg gtcaccgcgc tttcgacgga gctgttgctg
      481 ccgtgatgtc cggacgcaaa atgaaggaag tcgcgcgaga gttcccagat atctacgtca
      541 gacatgggcg gggcttgcat aacctctcgc tattggttgg ttcccgccca cgtgatttca
      601 agacggaggt tgacgtaatc tacgggccac cggggtgtgg caagagtaga tgggccaatg
      661 aacagccggg gactaaatat tataaaatgc gcggtgaatg gtgggatggg tatgatgggg
      721 aagatgtcgt cgtattggac gacttttatg ggtggttacc ttattgcgag atgctccgcc
      781 tctgcgaccg ttacccacat aaagtgccag ttaaaggcgc ttttgtggag tttaccagca
      841 agaggatcat tatcacgagc aataagcccc ccgagacctg gtacaaggag gactgtgacc
      901 ctaagccact gttccggaga ttcactcgtg tttggtggta caacattgac aagttggaac
      961 aagtccggcc tgatttcctc gcccacccca tcaatttttg acagtcccgg tgatgattaa
     1021 taaaagccag gcgtcgggcc gaaggcccga tgccgcatgg ggggacccca tgccggaggg
     1081 ctcggagggc cgtcaggccc gagagcccga ccagtccgga ggactaatgt ctgtgtcggg
     1141 gggggggccc cggggggtcc ccccgacacg acgagcacgg ttgcgccgaa ggcgctgtaa
     1201 taaaaactcg aaaaggtatt tgctgtttga gtctttatta agtgctggga ttgttagggg
     1261 caaactgacg gaattgaaca tacaaagtga gctgacatac ataagtgatc gttacttctg
     1321 gctgcgggaa gctgaaggca aggccgtagt gcttgacgtt cgctcctgcc gcgttgggtc
     1381 ctccttgtag tgggatccag ccggttctga cgctgttcag ccacaatgct gcagactggt
     1441 tcgctgtgct caggtcgttt attgttattt gtggttttgg tctgaggagg cgtttgaatc
     1501 ccctgctgat aaaccatttc ttggaaccgt cgaaaggtgc caatgggtct tgtgtttggt
     1561 ctgcagtagt tttaaattta gttattctgg agtcttggat tacggccgtg tggccgaatc
     1621 cgtctgaact aatggtgtag tggccccatg tgggtctcat ttccatttta gctaacttaa
     1681 ttcggtagtc ttcgaaattc agtgttggtg ggttcggtgt gtttgttagg aagtctgaca
     1741 atgtaaaggt gatatagtca gaattccaaa ttacgttgct aggttgtgtg gtgtttttgt
     1801 taatttggaa tttgaactgg cgtttgaatc tgagagtgta aattctattg gttgtgaaac
     1861 ggcgtctgcg gaagtgtcta cgtcgtctta ggcggtatcg cctgatgtga cgtctacggt
     1921 agtatgggcg ggcatatctt cgtctaatct gaaatgtagc gcatgcgcag ttagaggtgc
     1981 cccaaaggcg gcggttag
//