LOCUS       JX221037                1997 bp    ss-DNA  circular VRL 23-APR-2013
DEFINITION  Beak and feather disease virus isolate BFDV-J_PL-688_2008,
            complete genome.
ACCESSION   JX221037
VERSION     JX221037.1
KEYWORDS    .
SOURCE      Beak and feather disease virus
  ORGANISM  Beak and feather disease virus
            Viruses; ssDNA viruses; Circoviridae; Circovirus.
REFERENCE   1  (bases 1 to 1997)
  AUTHORS   Julian,L., Piasecki,T., Chrzastek,K., Walters,M., Muhire,B.,
            Harkins,G.W., Martin,D.P. and Varsani,A.
  TITLE     Extensive recombination detected among beak and feather disease
            virus isolates from breeding facilities in Poland
  JOURNAL   J. Gen. Virol. 94 (PT 5), 1086-1095 (2013)
   PUBMED   23324468
REFERENCE   2  (bases 1 to 1997)
  AUTHORS   Varsani,A., Julian,L., Piasecki,T. and Chrzastek,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUN-2012) School of Biological Sciences, University
            of Canterbury, Private Bag 4800, Christchurch, Canterbury 8014,
            New Zealand
COMMENT     ##Assembly-Data-START## Assembly Method :: DNAMAN v. 5.26
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1997
                     /mol_type="genomic DNA"
                     /country="Poland"
                     /collection_date="15-Oct-2008"
                     /host="Psittacus erithacus"
                     /note="genotype: J4"
                     /db_xref="taxon:77856"
                     /isolate="BFDV-J_PL-688_2008"
                     /organism="Beak and feather disease virus"
     CDS             132..1001
                     /codon_start=1
                     /protein_id="AGC55222.1"
                     /translation="MPSKEGSGCRRWCFTLNNPTDGEIEFVRTLGPDEFYYAIVGREK
                     GEQGTPHLQGYFHFKNKKRLSALKKMLPRAHFERAKGSDADNEKYCSKEGDVILTLGI
                     VARDGHRAFDGAVAAVMSGRKMKEVAREFPDIYVRHGRGLHNLSLLVGSRPRDFKTEV
                     DVIYGPPGCGKSRWANEQPGTKYYKMRGEWWDGYDGEDVVVLDDFYGWLPYCEMLRLC
                     DRYPHKVPVKGAFVEFTSKRIIITSNKPPETWYKEDCDPKPLFRRFTRVWWYNIDKLE
                     QVRPDFLAHPINF"
                     /product="replication associated protein"
     CDS             complement(1237..1974)
                     /codon_start=1
                     /protein_id="AGC55223.1"
                     /translation="MNCACATFQIRRRYARPYYRRRHIRRYRLRRRRHFRRRRFTTNR
                     IYTLRFKRQFKFQINKNTTQPSNVIWNSDYITFTLSDFLTNTPNPPTLNFEDYRIKLA
                     KMEMRPTWGHYTISSDGFGHTAVIQDSRITKFKTTADQTQDPLAPFDGSKKWFISRGF
                     KRLLRPKPQITINDLSTANQSAALWLNSVRTGWIPLQGGPNAAGANVKHYGLAFSFPQ
                     PEVTITYVCQLTLYVQFRQFAPNNPST"
                     /product="capsid protein"
                     /transl_except=(pos:complement(1972..1974),aa:Met)
ORIGIN      
        1 tattaccccg cccctggggc acgggggcac tgcagccatt ggctgcaggt ccccggtgcc
       61 cgcccctagg gaggagaaaa tgacgccgtt aggcgtcgta atctccggag gatcacactc
      121 gcccgggaac tatgccgtcc aaggagggct ctggctgtcg ccgttggtgt ttcaccctta
      181 acaaccctac agacggcgag atcgaattcg tccgtactct cgggcctgac gaattctact
      241 atgccatcgt tggacgggaa aagggcgagc aaggtacccc ccatttgcaa ggctactttc
      301 attttaaaaa taagaagcga ttgagcgcgc ttaagaaaat gctgccgcga gctcatttcg
      361 agcgcgctaa agggagcgat gcggataatg agaagtattg cagtaaagag ggggacgtga
      421 tacttaccct gggcattgtg gcgagagacg gtcaccgcgc tttcgacgga gctgttgctg
      481 ccgtgatgtc cggacgcaaa atgaaggaag tcgcgcgaga gttcccagat atctacgtca
      541 gacatgggcg gggcttgcat aacctctcgc tattggttgg ttcccgccca cgtgatttca
      601 agacggaggt tgacgtaatc tacgggccac cggggtgtgg caagagtaga tgggccaatg
      661 aacagccggg gactaaatat tataaaatgc gcggtgaatg gtgggatggg tatgatgggg
      721 aagatgtcgt cgtattggac gacttttatg ggtggttacc ttattgcgag atgctccgcc
      781 tctgcgaccg ttacccacat aaagtgccag ttaaaggcgc ttttgtggag tttaccagca
      841 agaggatcat tatcacgagc aataagcccc ccgagacctg gtacaaggag gactgtgacc
      901 ctaagccact gttccggaga ttcactcgtg tttggtggta caacattgac aagttggaac
      961 aagtccggcc tgatttcctc gcccacccca tcaatttttg acagtcccgg tgatgattaa
     1021 taaaagccag gcgtcgggcc gaaagcccga tgccgcatgg ggggacccca tgccggaggg
     1081 ctcggagggc cgtcaggccc gagagcccga ccagtccgga ggactaatgt ctgtgtcggg
     1141 ggggggcccc ggggggtccc cccgacacga cgagcacggt tgcgccgaag gcgctgtaat
     1201 aaaaactcga aaaggtattt gctgtttgag tctttattaa gtgctgggat tgttaggggc
     1261 aaactgacgg aattgaacat acaaagtgag ctgacataca taagtgatcg ttacttctgg
     1321 ctgcgggaag ctgaaggcaa ggccgtagtg cttgacgttc gctcctgccg cgttgggtcc
     1381 tccttgtagt gggatccagc cggttctgac gctgttcagc cacaatgctg cagactggtt
     1441 cgctgtgctc aggtcgttta ttgttatttg tggttttggt ctgaggaggc gtttgaatcc
     1501 cctgctgata aaccatttct tggaaccgtc gaaaggtgcc aatgggtctt gtgtttggtc
     1561 tgcagtagtt ttaaatttag ttattctgga gtcttggatt acggccgtgt ggccgaatcc
     1621 gtctgaacta atggtgtagt ggccccatgt gggtctcatt tccattttag ctaacttaat
     1681 tcggtagtct tcgaaattca gtgttggtgg gttcggtgtg tttgttagga agtctgacaa
     1741 tgtaaaggtg atatagtcag aattccaaat tacgttgcta ggttgtgtgg tgtttttgtt
     1801 aatttggaat ttgaactggc gtttgaatct gagagtgtaa attctattgg ttgtgaaacg
     1861 gcgtctgcgg aagtgtctac gtcgtcttag gcggtatcgc ctgatgtgac gtctacggta
     1921 gtatgggcgg gcatatcttc gtctaatctg aaatgtagcg catgcgcagt tagaggtgcc
     1981 ccaaaggcgg cggttag
//