LOCUS       KM452736                1987 bp    ss-DNA  circular VRL 01-JUN-2015
DEFINITION  Beak and feather disease virus isolate BFDV_NZ_201845_2013,
            complete genome.
ACCESSION   KM452736
VERSION     KM452736.1
KEYWORDS    .
SOURCE      Beak and feather disease virus
  ORGANISM  Beak and feather disease virus
            Viruses; ssDNA viruses; Circoviridae; Circovirus.
REFERENCE   1  (bases 1 to 1987)
  AUTHORS   Jackson,B., Varsani,A., Holyoake,C., Jakob-Hoff,R., Robertson,I.,
            McInnes,K., Empson,R., Gray,R., Nakagawa,K. and Warren,K.
  TITLE     Emerging infectious disease or evidence of endemicity? A
            multi-season study of beak and feather disease virus in wild
            red-crowned parakeets (Cyanoramphus novaezelandiae)
  JOURNAL   Arch. Virol. 160 (9), 2283-2292 (2015)
   PUBMED   26138559
REFERENCE   2  (bases 1 to 1987)
  AUTHORS   Jackson,B., Varsani,A., Holyoake,C., Jakob-Hoff,R., Robertson,I.,
            McInnes,K., Empson,R., Gray,R., Nakagawa,K. and Warren,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-SEP-2014) School of Biological Sciences, University
            of Canterbury, Private Bag 4800, Christchurch 8140, New Zealand
COMMENT     ##Assembly-Data-START## Assembly Method :: DNAMAN v. 7 Sequencing
            Technology :: Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1987
                     /mol_type="genomic DNA"
                     /country="New Zealand"
                     /collection_date="2013"
                     /host="Cyanoramphus novaezelandiae"
                     /db_xref="taxon:77856"
                     /isolate="BFDV_NZ_201845_2013"
                     /organism="Beak and feather disease virus"
     CDS             135..1001
                     /codon_start=1
                     /protein_id="AKI69652.1"
                     /translation="MPSKEGSGCRRWCFTLNNPTDGEIEFVRTLGPDEFYYAIVGREK
                     GEQGTPHLQGYFHFKSKKRLSALKKMLPRAHFERAKGSDADNEKYCSKEGDVIPTLGI
                     VARDGHRAFDGAVAAVMSGRKMKEVAREFPDIYVRHGRGLHSLSLLVGSSPRDFKTEV
                     DVIWGPPGCGKSRWANEQPGSKYYKMRGEWWDGYDGEDIVVIDDFYGWLPYCEMLRLC
                     DRYPHKVPVKGAFVEFTSRRIIITSNKPPETWYKEDCDPKPLFRRFTRVWWYTDKLEQ
                     VRPDFLAHPINF"
                     /product="replication associated protein"
     CDS             complement(1231..1968)
                     /codon_start=1
                     /protein_id="AKI69653.1"
                     /translation="MNCACATFQIRRRNARPYYRRRHFRRYRRRRRHFRRRRFTTNRI
                     YTLRLTRQFKFQIQKQTTSTGNLIFNSDYITFALSDFLTNTPNPQTLNFEDYRIKLAK
                     MEMRPTWGHYTIAADGFGHTAIIQDSRITKFKTTVDQTQDPLAPFDGAKKWYVSRGFK
                     RLLRPKPQITINDLATANQSAALWLNSARTGWIPLQGGPNAAGAKVKHYGIAFSFPQP
                     EQTITYVTKLTLYVQFRQFAPNNPSTQ"
                     /product="capsid protein"
                     /transl_except=(pos:complement(1966..1968),aa:Met)
ORIGIN      
        1 ttagtattac ccgcggcctg gggcaccggg gcaccgcagc cattggctgt aggtccccgg
       61 tgcccgcccc tagggaggag aaaaggacgc cgttaggcgt cctaatctcc ggaggatcac
      121 actcgcccgg aactatgccg tccaaggagg gctctggctg tcgccggtgg tgtttcaccc
      181 ttaataaccc tacggacggc gagatcgaat tcgtccgtac tctcgggcct gacgaattct
      241 actatgccat cgttggacgg gaaaagggcg agcaaggtac cccccatttg caaggctact
      301 tccattttaa aagtaagaag cgacttagcg cgcttaagaa aatgctgccg agagctcatt
      361 ttgagcgcgc taaagggagc gatgcggata atgagaagta ttgcagtaaa gagggagacg
      421 taatacctac cctgggcatt gtggcgagag atggtcaccg cgctttcgac ggagctgttg
      481 ctgccgtgat gtccggacgc aaaatgaagg aagtcgcgcg agagttccca gatatctacg
      541 tcaggcatgg gcggggcttg catagcctgt cgctattggt tggttccagc ccacgtgact
      601 tcaagaccga ggtcgacgtc atctgggggc ctccggggtg tggcaagagc cgatgggcca
      661 atgagcagcc cggaagtaaa tattataaaa tgcgtggtga atggtgggat ggatatgatg
      721 gggaagatat cgtcgttatt gacgactttt atgggtggct accttattgc gagatgctcc
      781 gcctttgcga ccgttaccca cataaggtgc cagttaaggg cgcctttgtg gagtttacga
      841 gcaggaggat cattatcacg agcaataagc cccccgagac ctggtacaag gaggactgtg
      901 acccgaagcc actgttccgg agattcaccc gtgtttggtg gtacacggac aagttggaac
      961 aagtccggcc tgatttcctc gctcatccca tcaatttttg acagtcccgg tgatgtttaa
     1021 caaagttagg cgtcgggccg aaggcccgat gccgcagggc gggacgccct gccggagggc
     1081 tcggagggcc gtcaggcccg agagcccgac cagcccggag ggcctcgtct gtgtcggggg
     1141 gggggccccg gggggtcccc ccgacacgac caacacggta gcgccgaagg cgccaataaa
     1201 aactggaaaa gtaatttgtt gtctgagtct ttattgagta ctgggattgt taggggcaaa
     1261 ctgacggaat tgaacataca aagtgagttt ggtaacataa gtgatcgttt gttctggctg
     1321 agggaagctg aaggcaattc cgtagtgctt gactttcgct cctgctgcgt tgggtcctcc
     1381 ttgtagtggg atccagccgg ttctggcgct gtttagccac aatgccgcag actggttcgc
     1441 tgtggccagg tcgtttatcg ttatttgtgg tttcggtctg aggagtcgtt tgaatcccct
     1501 gctaacatac cactttttgg caccgtcgaa aggtgccagg gggtcttggg tttggtctac
     1561 agtagtttta aatttagtaa ttctagagtc ttggattatg gccgtatggc cgaatccgtc
     1621 tgcagctatt gtgtagtggc cccatgtggg ccgcatttcc attttagcta acttaattcg
     1681 gtagtcttcg aaatttagtg tttgtgggtt tggtgtgttt gttaggaagt ctgacaatgc
     1741 aaaggttatg tagtcagaat taaaaattag gttgccagta cttgtagttt gtttttgaat
     1801 ttggaatttg aattggcgtg tgagtctgag agtgtaaatt ctattggttg tgaaacggcg
     1861 tctgcggaag tgtctgcgtc gccgtcggta tcggcggaag tgacgtctgc ggtagtatgg
     1921 gcgggcattt cttcgtctaa tctgaaatgt agcgcatgcg cagttagagg tgccccacag
     1981 gcggcgg
//