LOCUS       JX221034                1994 bp    ss-DNA  circular VRL 23-APR-2013
DEFINITION  Beak and feather disease virus isolate BFDV-N_PL-680_2008,
            complete genome.
ACCESSION   JX221034
VERSION     JX221034.1
KEYWORDS    .
SOURCE      Beak and feather disease virus
  ORGANISM  Beak and feather disease virus
            Viruses; ssDNA viruses; Circoviridae; Circovirus.
REFERENCE   1  (bases 1 to 1994)
  AUTHORS   Julian,L., Piasecki,T., Chrzastek,K., Walters,M., Muhire,B.,
            Harkins,G.W., Martin,D.P. and Varsani,A.
  TITLE     Extensive recombination detected among beak and feather disease
            virus isolates from breeding facilities in Poland
  JOURNAL   J. Gen. Virol. 94 (PT 5), 1086-1095 (2013)
   PUBMED   23324468
REFERENCE   2  (bases 1 to 1994)
  AUTHORS   Varsani,A., Julian,L., Piasecki,T. and Chrzastek,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUN-2012) School of Biological Sciences, University
            of Canterbury, Private Bag 4800, Christchurch, Canterbury 8014,
            New Zealand
COMMENT     ##Assembly-Data-START## Assembly Method :: DNAMAN v. 5.26
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1994
                     /mol_type="genomic DNA"
                     /country="Poland"
                     /collection_date="06-Oct-2008"
                     /host="Melopsittacus undulatus"
                     /note="genotype: N4"
                     /db_xref="taxon:77856"
                     /isolate="BFDV-N_PL-680_2008"
                     /organism="Beak and feather disease virus"
     CDS             135..1001
                     /codon_start=1
                     /protein_id="AGC55216.1"
                     /translation="MPSKEGSGCRRWCFTLNNPTDGEIEFVRTLGPDEFYYAIVGREK
                     GEQGTPHLQGYFHFKNKKRLSALKKMLPRAHFERAKGSDADNEKYCSKEGDVILTLGI
                     VARDGHRAFDGAVAAVMSGRKMKEVAREFPDIYVRHGRGLHNLSLLVGSRPRDFKTEV
                     DVIYGPPGCGKSKWANEQPGTKYYKMRGEWWDGYDGEDVVILDDFYGWLPYCEMLRLC
                     DRYPHKVPVKGAFVEFTSKRIIITSNKAPETWYKEDCDPKPLFRRFTRVWWYTDKLEQ
                     VRPDFLAHPINF"
                     /product="replication associated protein"
     CDS             complement(1234..1971)
                     /codon_start=1
                     /protein_id="AGC55217.1"
                     /translation="MKCACAKFQIRRRYARPYYRRRHIRRYRRRRRYFRRRRFSTNRI
                     YTLRLKRQFKFDIQKQTTSTGQVIWNSDYITFTLSDFLTNTPNPQTLNFEDYRIKLAK
                     MELRPTWGHYSISSAGFGHTAIIQDSRITKFKTKIDQTQDPVAPFDGAKKWYLSRGFK
                     RLLRPKPQITINDLSTANQSAALWLNSVRTGWIPLQGGPDAAGANVKHYGLAFSFPQP
                     EVTITYVCQLTLYVQFRQFAPNNPRTE"
                     /product="capsid protein"
                     /transl_except=(pos:complement(1969..1971),aa:Met)
ORIGIN      
        1 tattacccgc cgcctggggc accggggcac cgcagccatt ggctgccgtg ccgaggtgcc
       61 ccgccttagg gaggagtaaa tggcgccgtt aaacggtgcc gtaatttccg gaggatcgta
      121 ctcgcccggg aaccatgccg tccaaggagg gctctggctg tcgccgttgg tgtttcaccc
      181 ttaacaaccc tacagacggc gagatcgaat tcgtccgtac tctggggcct gacgaattct
      241 actatgccat cgttggacgg gaaaagggcg agcaaggtac cccacatttg caaggttact
      301 ttcattttaa gaataagaag cgactgagcg cgcttaagaa aatgctgccg cgagctcatt
      361 ttgagcgcgc taaagggagt gatgcagata atgagaagta ttgcagtaaa gagggggacg
      421 ttatacttac cctgggcatt gtggcgagag acggtcaccg cgctttcgac ggagctgttg
      481 ctgccgtgat gtccggacgc aaaatgaagg aagtcgcgcg agagtttcct gatatctacg
      541 tcaggcatgg gcggggcctg cataacctct cgctattggt cggttcccgc ccacgtgatt
      601 ttaagacaga agttgacgtc atctacgggc cccctgggtg tggcaagagt aaatgggcca
      661 atgaacagcc tgggactaag tattataaaa tgcgcggtga atggtgggat ggatatgatg
      721 gggaagatgt cgtcatattg gacgactttt atgggtggct accctattgt gagatgctcc
      781 gcctctgcga ccgttaccca cataaagtgc cagttaaggg cgcttttgtg gagtttacca
      841 gcaagaggat cattatcacc agcaataagg cccccgagac ctggtacaag gaggactgtg
      901 acccgaagcc actgttccgg agattcactc gtgtttggtg gtatactgac aagttggaac
      961 aagtccggcc tgatttcctt gcccacccca tcaatttttg ataccccccg gaggttatta
     1021 ataaaagccg gccgtcgggc cgaaagcccg atggcgcagg gcgggacgcc ctgccggagg
     1081 gctcgcaggg ccgtcaggcc cgagagcccg accagcccgg agggcctagt ctgtgttcgg
     1141 ggggggggcc ccggggggtc cccccgacac gacgagaatg gtagcgccga aggcgccaat
     1201 aaacactcga aaatgtattt gccgtttgag tatttattca gttctgggat tattgggggc
     1261 aaactgacgg aattgaacat acaatgtaag ttgacataca taagtgatcg ttacttctgg
     1321 ctgagggaag ctgaaggcca ggccgtagtg cttgacgttc gctcctgctg cgtcgggtcc
     1381 tccttgtagt gggatccatc cggttctgac gctgttgagc cacaatgccg cagactggtt
     1441 cgctgtgctc aggtcgttta ttgttatttg aggttttggt ctgaggaggc gtttgaatcc
     1501 cctgctaaga taccatttct tggcaccgtc gaaaggtgcc accgggtctt gtgtttggtc
     1561 aatcttagtt ttaaatttag ttattctgga gtcttggatt atggccgtgt ggccgaatcc
     1621 ggctgaacta atggagtagt ggccccatgt gggcctcagt tccattttag ctaacttgat
     1681 ccggtagtct tcaaaattta gtgtttgtgg gtttggtgtg tttgttagga agtctgacaa
     1741 tgtaaaggtt atgtagtcag agttccaaat tacttggcca gtgcttgtgg tttgtttttg
     1801 aatatcgaat ttgaattggc gcttgagtct gagcgtgtaa attctattgg tcgagaaacg
     1861 gcgtctgcgg aagtatctgc gtcgacggcg gtatcgccgg atatgacgtc tgcggtagta
     1921 tgggcgggca tatcttcgtc taatctgaaa tttagcgcat gcgcatttag aggtgcccca
     1981 caggcggcgg ttag
//