LOCUS       JX221043                1992 bp    ss-DNA  circular VRL 23-APR-2013
DEFINITION  Beak and feather disease virus isolate BFDV-Q_PL-902_2009,
            complete genome.
ACCESSION   JX221043
VERSION     JX221043.1
KEYWORDS    .
SOURCE      Beak and feather disease virus
  ORGANISM  Beak and feather disease virus
            Viruses; ssDNA viruses; Circoviridae; Circovirus.
REFERENCE   1  (bases 1 to 1992)
  AUTHORS   Julian,L., Piasecki,T., Chrzastek,K., Walters,M., Muhire,B.,
            Harkins,G.W., Martin,D.P. and Varsani,A.
  TITLE     Extensive recombination detected among beak and feather disease
            virus isolates from breeding facilities in Poland
  JOURNAL   J. Gen. Virol. 94 (PT 5), 1086-1095 (2013)
   PUBMED   23324468
REFERENCE   2  (bases 1 to 1992)
  AUTHORS   Varsani,A., Julian,L., Piasecki,T. and Chrzastek,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUN-2012) School of Biological Sciences, University
            of Canterbury, Private Bag 4800, Christchurch, Canterbury 8014,
            New Zealand
COMMENT     ##Assembly-Data-START## Assembly Method :: DNAMAN v. 5.26
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1992
                     /mol_type="genomic DNA"
                     /country="Poland"
                     /collection_date="23-Jun-2009"
                     /host="Platycercus elegans"
                     /note="genotype: Q1"
                     /db_xref="taxon:77856"
                     /isolate="BFDV-Q_PL-902_2009"
                     /organism="Beak and feather disease virus"
     CDS             135..1001
                     /codon_start=1
                     /protein_id="AGC55234.1"
                     /translation="MPSKEGSGCRRWCFTLNNPTDGEIEFVRTLGPDEFYYAIVGREK
                     GEQGTPHLQGYFHFKNKKRLSALKKMLPRAHFERAKGSDADNEKYCSKEGDVILTLGI
                     VARDGHRAFDGAVAAVMSGRKMKEVAREFPDIYVRHGRGLHNLSLLVGSRPRDFKTEV
                     DVIFGPPGCGKSKWANEQPGTKYYKMRGEWWDGYDGEDIVILDDFYGWLPYCEMLRLC
                     DRYPHKVPVKGAFVEFTSKRIIITSNKAPETWYKEDCDPKPLFRRFTRVWWYTDKLEQ
                     VRPDFLAHPINF"
                     /product="replication associated protein"
     CDS             complement(1238..1969)
                     /codon_start=1
                     /protein_id="AGC55235.1"
                     /translation="MNCACATFQIRRRTRPYYRRRHIRRYRRRRRYFRRRRFTTNRIY
                     TIRLKRQFKFTIQKQTTSAGNMIWNSDYITFTLSDFMTNTPNPPTLNFEDYRIKLAKM
                     ELRPTNGHSTIASAGFGHTAVIQDSRITKFKTTADQTQDPLAPFDGAKKWYLSKGFKR
                     LLRPKPQITIQDLSTANQSAALWLNSVRTGWIPLQGGPNSAGTNVKHYGLAFSFPQPD
                     KRIDYVCMLTLYVQFRQFAPNNPST"
                     /product="capsid protein"
                     /transl_except=(pos:complement(1967..1969),aa:Met)
ORIGIN      
        1 tattacccgc cgcctggggc accggggcac cgcagccatt ggctgccgtg ccgaggtgcc
       61 ccgccttagg gaggagtaaa tggcgccgtt aaacggtgcc gtaatttccg gatgatcaca
      121 ctcgcccggg aaccatgccg tccaaggagg gctctggctg tcgccgttgg tgtttcaccc
      181 ttaacaaccc tacagacggc gagatcgaat tcgtccgtac tctggggcct gacgaattct
      241 actatgccat cgttggacgg gaaaagggcg agcaaggtac ccctcatttg caaggttatt
      301 ttcattttaa gaataagaag cgactgagcg cgcttaagaa aatgctgccg cgagctcatt
      361 ttgagcgcgc taaagggagt gatgcagata atgagaagta ttgcagtaaa gagggcgacg
      421 tgatacttac tctgggcatt gtggcgagag acggtcaccg cgctttcgac ggagctgttg
      481 ctgccgtgat gtccggacgc aaaatgaagg aagtcgcgcg agagttccca gatatctacg
      541 tcaggcatgg gcggggcttg cataacctct cactattggt cggttcccgc ccacgtgatt
      601 tcaagacaga agttgacgtc atctttggcc cgcctgggtg tggcaagagt aaatgggcca
      661 atgagcagcc tgggactaag tattataaaa tgcgcggtga gtggtgggat gggtatgatg
      721 gagaagatat cgtcatcttg gatgactttt atgggtggct accttattgc gagatgctcc
      781 gcctatgcga ccgttaccct cataaggtgc cagttaaagg cgcctttgtg gagtttacca
      841 gcaagaggat cattatcacg agcaataagg cccccgagac ctggtacaag gaggactgtg
      901 acccgaagcc actgttccgg agattcactc gtgtttggtg gtacactgac aagttggaac
      961 aagtccggcc tgatttcctt gcccacccca tcaatttttg ataccccccg gaggttatta
     1021 ataaaagccg gccgtcgggc cgaaggcccg atggcgcagg gcgggacgcc ctgccggagg
     1081 gctcgcaggg ccgtcaggcc cgagagcccg accagcccgg agggcctcgt ctgtgtcggg
     1141 gggggggccc caggggggtc cccccgacac gaccaacacg gtcagcgccg aaggcgccaa
     1201 taaacactcg aaaaggtatt tgccgtttga gtctttatta agtgctggga ttattggggg
     1261 caaattgacg gaattgaaca tacagagtta gcatgcatac atagtcgata cgtttatctg
     1321 gctgagggaa gctgaaggca aggccgtagt gcttgacgtt cgtgcctgct gagttgggtc
     1381 ctccttgtag tgggatccag ccggttctga cgctgttgag ccacaatgcc gcagactggt
     1441 tcgctgtgct caggtcctgt atcgttattt gtggttttgg tcttaggagg cgtttgaatc
     1501 ccttgctaag ataccatttt tttgcaccgt cgaaaggtgc cagcgggtct tgtgtttggt
     1561 ctgcagtagt tttaaattta gttattctgg aatcttggat tacggccgtg tggccgaatc
     1621 cggcggaagc aatggtggag tgaccatttg tgggcctcag ttccatttta gctaacttaa
     1681 tcctgtagtc ttcgaaattc agtgttggtg gatttggtgt gttcgtcatg aagtctgaca
     1741 atgtaaaggt tatgtagtca gaattccaaa tcatattgcc cgcagaggta gtctgtttct
     1801 gaatggtgaa tttgaattgg cgtttgagtc tgatcgtgta aattctattg gttgtgaatc
     1861 ggcgtctgcg gaagtatcta cgtcgccggc ggtatcgccg gatgtgacgt ctgcggtagt
     1921 atgggcgggt tcttcgtcta atctgaaatg tagcgcatgc gcagttagag gtgccccaca
     1981 ggcggcggtt ag
//