LOCUS       JX221015                1992 bp    ss-DNA  circular VRL 23-APR-2013
DEFINITION  Beak and feather disease virus isolate BFDV-S_PL-168_2006,
            complete genome.
ACCESSION   JX221015
VERSION     JX221015.1
KEYWORDS    .
SOURCE      Beak and feather disease virus
  ORGANISM  Beak and feather disease virus
            Viruses; ssDNA viruses; Circoviridae; Circovirus.
REFERENCE   1  (bases 1 to 1992)
  AUTHORS   Julian,L., Piasecki,T., Chrzastek,K., Walters,M., Muhire,B.,
            Harkins,G.W., Martin,D.P. and Varsani,A.
  TITLE     Extensive recombination detected among beak and feather disease
            virus isolates from breeding facilities in Poland
  JOURNAL   J. Gen. Virol. 94 (PT 5), 1086-1095 (2013)
   PUBMED   23324468
REFERENCE   2  (bases 1 to 1992)
  AUTHORS   Varsani,A., Julian,L., Piasecki,T. and Chrzastek,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUN-2012) School of Biological Sciences, University
            of Canterbury, Private Bag 4800, Christchurch, Canterbury 8014,
            New Zealand
COMMENT     ##Assembly-Data-START## Assembly Method :: DNAMAN v. 5.26
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1992
                     /mol_type="genomic DNA"
                     /country="Poland"
                     /collection_date="09-Jan-2006"
                     /host="Aprosmictus erythropterus"
                     /note="genotype: S1"
                     /db_xref="taxon:77856"
                     /isolate="BFDV-S_PL-168_2006"
                     /organism="Beak and feather disease virus"
     CDS             132..1001
                     /codon_start=1
                     /protein_id="AGC55178.1"
                     /translation="MPSKEGSGCRRWCFTLNNPTDGEIEFVRTLGPDEFYYAIVGREK
                     GEQGTPHLQGYFHFKNKKRLSALKKMLPRAHFERAKGSDADNEKYCSKEGDVILTLGI
                     VARDGHRAFDGAVAAVMSGRKMKEVAREFPDIYVRHGRGLHNLSLLVGSRPRDFKTEV
                     DVIYGPSGCGKSRWANEQPGTKYYKMRGEWWDGYDGEDVVVLDDFYGWLPYCEMLRLC
                     DRYPHKVPVKGAFVEFTSKRIIITSNKPPETWYKEDCDPKPLFRRFTRVWWYNIDKLE
                     QVRPDFLAHPINF"
                     /product="replication associated protein"
     CDS             complement(1235..1969)
                     /codon_start=1
                     /protein_id="AGC55179.1"
                     /translation="MNCACAKFQMRRRYTRPHYRRRHFRRYRRRRRYFRRRRFTTNRI
                     YTLRLTRQFKFQILKQTTSTGNVIWNSDYVTFTLSDFLENTPNPQTLNFEDYRIKLAK
                     IEMRPTWGHYTIAADGFGHTAVIQDSRITKFKTTTDQTQDPLAPFDGAKKWYLSRGFK
                     RLLRPKPQITINDLATANQSAALWLNSARTGWIPLLGGPATAGTKVKRYGIAFSFSQP
                     DQLITFITKLTVNVQFRQVAPSNPST"
                     /product="capsid protein"
                     /transl_except=(pos:complement(1967..1969),aa:Met)
ORIGIN      
        1 tattacccgc cgcctggggc accggggcac cgcagccatt ggctgccgtg tcgaggtgcc
       61 cgcccctagg gaggagaaaa tgacgccgtt aggcgtcgta atctccggag gatcacactc
      121 gcccgggaac catgccgtcc aaggagggtt ctggctgtcg ccgttggtgt ttcaccctta
      181 acaaccctac agacggcgag atcgaattcg tccgtactct cgggcctgac gaattctact
      241 atgccatcgt tggacgggaa aagggcgagc aaggtacccc ccatttgcaa ggctactttc
      301 attttaaaaa taagaagcga ctgagcgcgc ttaagaaaat gctgccgcga gctcattttg
      361 agcgcgctaa agggagcgat gcggataatg agaagtattg cagtaaagag ggggacgtga
      421 tacttaccct gggcattgtg gcgagagacg gtcaccgcgc tttcgacgga gctgttgctg
      481 ccgtgatgtc cggacgcaaa atgaaggaag tcgcgcgaga gttcccagat atctacgtca
      541 gacatgggcg gggcttgcat aacctctcgc tattggttgg ttcccgccca cgtgatttca
      601 agacggaggt tgacgtaatc tacggcccat cggggtgtgg caagagtaga tgggccaatg
      661 aacagccggg gactaaatat tataaaatgc gcggtgaatg gtgggatggg tatgatgggg
      721 aagatgtcgt cgtattggac gacttttatg ggtggttacc ttattgcgag atgctccgcc
      781 tatgtgaccg ttacccacat aaagtgccag ttaaaggcgc ttttgttgag tttacgagca
      841 agaggatcat tatcacgagt aataagcccc ccgagacctg gtacaaggag gactgtgacc
      901 cgaagccact gttccggaga ttcactcgtg tgtggtggta caacattgac aagttggaac
      961 aagtccggcc tgatttcctc gcccacccca tcaacttttg acagtcccgg agatgattaa
     1021 taaaagttag gcgtcaggcc gaaggcctga tgccgcaggg cgggacgccc tgccggaggg
     1081 ctcggagggc cgtcaggccc gagagcccga ccagcccgga gggcctcgtc tgtgtcgggg
     1141 ggggggcccc ggggggtccc cccgacacga ccaacacggt agcgccgaag gcgccaataa
     1201 aaactcgaaa aggtatttgt tgtctgagtc tttattaagt actgggattg ctaggggcaa
     1261 cctgacggaa ttgaacattc acagtgagct tggtaataaa agtgatcagt tggtctggct
     1321 gggagaagct gaaggcaatg ccgtagcgct tgaccttcgt tcctgcagtc gcgggtcctc
     1381 ctagcagtgg gatccagccg gttctggcgc tgtttagcca caatgctgca gactggttcg
     1441 ctgtggccag gtcgtttatc gttatttgtg gtttcggtct gaggaggcgt ttgaagcctc
     1501 tgctaaggta ccattttttg gcaccgtcga aaggtgccag tgggtcttgt gtttggtctg
     1561 tagtagtttt gaatttagtg attctggagt cttggattac ggccgtgtgg ccgaatccgt
     1621 ctgcagctat ggtgtagtgg ccccatgtgg gcctcatttc tattttagct aacttaattc
     1681 ggtagtcttc gaaattcagt gtttgtgggt ttggtgtgtt ttctaggaag tctgacaatg
     1741 tgaaggtaac gtagtcagag ttccatatta cgtttccagt actggtggtt tgttttagaa
     1801 tttggaattt gaattggcgt gttagtctga gagtgtaaat tctattggtt gtgaaacggc
     1861 gtctgcggaa gtatctacgt ctcctgcggt aacgccggaa gtgacgtctt cggtagtgtg
     1921 ggcgggtata tcttcgtctc atctgaaatt tagcgcatgc gcagttagag gtgccccaca
     1981 ggcggcggtt ag
//