LOCUS       KM188454                1995 bp    DNA     circular VRL 19-OCT-2014
DEFINITION  Beak and feather disease virus isolate BFDV_ZA_GT02_2011, complete
            genome.
ACCESSION   KM188454
VERSION     KM188454.1
KEYWORDS    .
SOURCE      Beak and feather disease virus
  ORGANISM  Beak and feather disease virus
            Viruses; ssDNA viruses; Circoviridae; Circovirus.
REFERENCE   1  (bases 1 to 1995)
  AUTHORS   Regnard,G.L., Boyes,R.S., Martin,R.O., Hitzeroth,I.I. and
            Rybicki,E.P.
  TITLE     Beak and feather disease viruses circulating in Cape parrots
            (Poicepahlus robustus) in South Africa
  JOURNAL   Arch. Virol. (2014) In press
   PUBMED   25209153
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 1995)
  AUTHORS   Regnard,G.L., Boyes,R.S., Martin,R.O., Hitzeroth,I.I. and
            Rybicki,E.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JUL-2014) Molecular and Cell Biology, University of
            Cape Town, 22 University Avenue, Upper Campus, Rondebosch, Cape
            Town, Western Cape 7700, South Africa
COMMENT     ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy
            sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1995
                     /mol_type="genomic DNA"
                     /country="South Africa: East London, Eastern Cape
                     Province"
                     /isolation_source="blood"
                     /collected_by="Rutledge S. Boyes"
                     /collection_date="26-Jul-2010"
                     /host="Poicephalus robustus (Cape parrot)"
                     /db_xref="taxon:77856"
                     /isolate="BFDV_ZA_GT02_2011"
                     /organism="Beak and feather disease virus"
     CDS             131..997
                     /codon_start=1
                     /protein_id="AIT52898.1"
                     /translation="MPSKEGSGCRRWCFTLNNPTDGEIEFVRTLGPDEFYYAIVGREK
                     GEQGTPHLQGYFHFKNKKRLSALKKMLPRAHFERAKGSDADNEKYCSKEGDVILTLGI
                     VARDGHRAFDGAVAAVMSGRKMKEVAREFPDIYVRHGRGLHNLSLLVGSRPRDFKTEV
                     DVIYGPPGCGKSKWANEQPGTKYYKMRGEWWDGYDGEDVVILDDFYGWLPYCEMLRLC
                     DRYPHKVPVKGAFVEFTSKRIIITSNKAPETWYKEDCDPKPLFRRFTRVWWYTDKLEQ
                     VRPDFLAHPINF"
                     /product="replication-associated protein"
                     /note="Rep"
     CDS             complement(1234..1968)
                     /codon_start=1
                     /protein_id="AIT52899.1"
                     /translation="MNCACAIFQIRRRYARPYYRRRHIRRYRRRRRYFRRRRFTTNRI
                     YTLRLKRQFKFEIRANTTSPGNVIWNSDYITFTLSDFITNTPNPQNLNFEDYRIKLAK
                     MELRPTWGHYSFSSEGFGHTAVIQDSRLTKFKTTADQQQDPVAPFDGARKWYLAKGFK
                     RLLRPKPQITIEDLSTANQSAALWLNSTRTGWIPLQGGPNQAGVNVKHYGLAFSFPQP
                     KLAITYECQLTLYVQFRQFAPNNPNT"
                     /product="capsid protein"
                     /transl_except=(pos:complement(1966..1968),aa:Met)
ORIGIN      
        1 acccgccgcc tggggcaccg gggcaccgca gccattggct gccgtgccga ggtgccccgc
       61 cttagggagg agtaaatggc gccgttaaac ggtgccgtaa tttccggagg atcacactcg
      121 cccgggaacc atgccgtcca aggagggctc tggctgtcgc cgttggtgtt tcacccttaa
      181 caaccctaca gacggcgaga tcgaattcgt ccgtactctc gggcctgacg aattctacta
      241 tgccatcgtt ggacgggaaa agggcgagca aggtaccccc catttgcaag gctactttca
      301 tttcaaaaat aagaagcgac tgagcgcgct taagaaaatg ctgccgcgag ctcattttga
      361 gcgcgccaaa gggagtgatg cagataatga gaagtattgc agtaaagagg gggacgttat
      421 acttaccctg ggcattgtgg cgagagacgg tcaccgcgct ttcgacggag ctgttgctgc
      481 cgtgatgtcc ggacgcaaaa tgaaggaagt cgcgcgagag ttccctgata tctacgtcag
      541 gcatgggcgg ggcttgcata acctctcgct attggtcggt tcccggccac gtgatttcaa
      601 aacagaggtt gacgtcatct acgggccacc tgggtgtggc aaaagcaaat gggccaatga
      661 gcagcctggg actaagtatt ataaaatgcg cggtgaatgg tgggatggat atgatgggga
      721 agatgtcgtc atattggatg acttttatgg gtggctacct tattgtgaga tgctccgcct
      781 atgcgaccgt tacccacata aagtgccagt taagggcgct tttgtggagt ttaccagcaa
      841 gaggatcatt atcacgagca ataaggcccc cgagacttgg tacaaggagg actgtgaccc
      901 gaagccactt ttccggagat tcactcgtgt ttggtggtac actgacaagt tggaacaagt
      961 ccggcctgat ttccttgccc accccatcaa tttttgatac cccccggagg ttattaataa
     1021 aagccggccg tcgggccgaa ggcccgatgg cgcagggcgg gacgccctgc cggagggctc
     1081 gcagggccgt caggcccgag agcccgacca gcccggaggg cctagtctgt gtcggggggg
     1141 ggggccccag gggggtcccc ccgacacgac gagaatggta gcgccgaagg cgccaataaa
     1201 cactcgaaaa ggtatttgcc gtttgagtct ttattaagtg ttggggttat tgggggcaaa
     1261 ctgacggaat tgaacataca gagttagctg gcattcataa gtgatcgcta attttggctg
     1321 agggaagctg aaggcaaggc cgtagtgctt gacgttcact cctgcctggt tgggtcctcc
     1381 ttgtagtggg atccagccgg ttctggtgct gttgagccac aatgccgcag actggttggc
     1441 tgtgctcagg tcttctatcg ttatttgtgg ttttggtctt aggaggcgtt tgaatccttt
     1501 ggctaaatac cattttctgg caccgtcgaa aggtgccacc gggtcttgtt gttggtctgc
     1561 agtagtttta aatttagtta atctggagtc ttggattact gccgtgtggc cgaatccctc
     1621 agaagaaaag gagtagtggc cccatgtggg tctcaattcc attttagcta acttaattcg
     1681 gtagtcttcg aaattcagat tttgtgggtt tggtgtgttt gttatgaagt ctgacaatgt
     1741 gaaggttatg tagtcagaat tccaaattac gttaccagga ctggtggtgt ttgctcgaat
     1801 ttcgaatttg aattggcgtt tgagcctgag agtgtaaatt ctattggttg tgaagcggcg
     1861 tctgcggaag tatctacgtc gacggcggta tcgccggatg tgacgtctgc ggtagtatgg
     1921 gcgggcatat cttcgtctaa tctgaaatat agcgcatgcg cagttagagg tgccccacag
     1981 gcggcggtta gtatt
//