LOCUS       HM748920                1991 bp    DNA     circular VRL 22-MAR-2011
DEFINITION  Beak and feather disease virus isolate BFDV_ZA_PGM_80A_2008,
            complete genome.
ACCESSION   HM748920
VERSION     HM748920.1
KEYWORDS    .
SOURCE      Beak and feather disease virus
  ORGANISM  Beak and feather disease virus
            Viruses; ssDNA viruses; Circoviridae; Circovirus.
REFERENCE   1  (bases 1 to 1991)
  AUTHORS   Varsani,A., Regnard,G.L., Bragg,R., Hitzeroth,I.I. and
            Rybicki,E.P.
  TITLE     Global genetic diversity and geographical and host-species
            distribution of beak and feather disease virus isolates
  JOURNAL   J. Gen. Virol. 92 (PT 4), 752-767 (2011)
   PUBMED   21177924
REFERENCE   2  (bases 1 to 1991)
  AUTHORS   Varsani,A., Regnard,G.L., Hitzeroth,I.I. and Rybicki,E.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2010) Electron Microscope Unit, University of
            Cape Town, Rondebosch, Cape Town, WP 7701, South Africa
FEATURES             Location/Qualifiers
     source          1..1991
                     /mol_type="genomic DNA"
                     /country="South Africa"
                     /collection_date="2008"
                     /host="Poicephalus gulielmi massaicus"
                     /db_xref="taxon:77856"
                     /isolate="BFDV_ZA_PGM_80A_2008"
                     /organism="Beak and feather disease virus"
     CDS             135..1001
                     /codon_start=1
                     /protein_id="ADY62619.1"
                     /translation="MPSKEGSGCRRWCFTLNNPTDGEIEFVRSLGPDEFYYAIVGREK
                     GEQGTPHLQGYFHFKTKKRLSALKKMLPRGHFERAKGSDAENEKYCSKEGDVILTLGI
                     VARDGHRAFDGAVAAVMSGRKMKEVAREFPEIYVRHGRGLHSLSLMVGSRPRDFKTEV
                     DVIYGPPGCGKSRWANEQPGTKYYKMRGEWWDGYDGEDVVILDDFYGWLPFCEMLRLC
                     DRYPHKVPVKGAFVEFTSRRIIITSNKPPETWYKEDCDPKPLFRRFTRVWWYTDKLEQ
                     VRPDFLAHPINF"
                     /product="Rep"
     CDS             complement(1234..1968)
                     /codon_start=1
                     /protein_id="ADY62620.1"
                     /translation="MNCACAIFQIRRRWTRPYYRRRHIRRYRRRRRYFRKRRFSTNRI
                     YTLRFKRQFKFQILKQTTQPGNLIWNSDYITFALSDFLNTPNPPTLNFEDYRIKLAKM
                     EMRPTWGHYTISPEGFGHTAVIQDSRIMKFKTTADQSQDPVAPFDGAKKWYVSRGFKR
                     LLRPKPQITIDDLTTANQSAALWLNSARTGWIPLQGGPNAAGAKVKHYGLAFSFPQPE
                     VTITYVCMLTLYVQFRQFAPNNPNPT"
                     /product="CP"
                     /transl_except=(pos:complement(1966..1968),aa:Met)
ORIGIN      
        1 tattacccgc cgcctggggc accggggcac cgcagctatt ggctgcattg ccgaggtgcc
       61 cgcccctagg gaggagtaaa tggcgccgtt atacggcgcc gtaatctccg gaggatcata
      121 cccggcgagt aaccatgccg tccaaggagg gctctggctg tcgccgttgg tgtttcaccc
      181 ttaacaaccc tacagacggc gagatcgaat tcgtccgttc tctcgggcct gacgaattct
      241 actatgccat cgttggacgg gagaagggcg agcaaggtac cccccatttg caaggctact
      301 ttcattttaa aactaagaag cgactgagcg cgcttaagaa aatgcttccg cgaggacatt
      361 ttgagcgcgc taaagggagc gatgcggaga atgagaagta ttgcagtaag gagggggacg
      421 taatacttac cctgggcatt gtggcgagag acggtcaccg cgctttcgac ggagctgttg
      481 ctgccgtgat gtccggacgc aaaatgaagg aagtcgcgcg agagttccca gagatctacg
      541 tcaggcatgg gcggggcttg catagcctct cgctaatggt tggttcccgc ccacgtgact
      601 tcaagactga ggtcgacgtc atctacggac caccggggtg tggcaagagt agatgggcca
      661 atgagcagcc ggggaccaaa tattataaaa tgcgcggtga atggtgggat ggatatgatg
      721 gggaagatgt cgtcatcttg gacgacttct atgggtggct acctttttgc gagatgctcc
      781 gcctctgtga ccgttaccca cacaaagtgc cagttaaggg cgcctttgtg gagtttacga
      841 gcaggaggat aattatcacg agcaataagc cccccgagac ttggtacaag gaggactgtg
      901 acccgaagcc actgttccgg agattcactc gtgtttggtg gtacactgac aagttggaac
      961 aagtccggcc tgatttcctc gcccacccca tcaatttctg atcgttttgg tgatgtttaa
     1021 taaatttagg cgtcgggccg aaggcccgat gccgcagggg gggaccccct gccggagggt
     1081 tcgcagggcc gtcaggcccg agaacccgac cagcccggag ggcctcgtct gtgtcggggg
     1141 gggggccccg gggggtcccc ccgacacgac caacacggta gcgccgaagg cgccaataaa
     1201 cactcgaaaa ggtacttgtt gtttgagtct ttattaagtg gggtttggat tgttaggggc
     1261 aaactgacgg aattgaacat acaaagtgag catgcataca taagtgatcg ttacttctgg
     1321 ctgagggaag ctgaatgcaa ggccgtagtg cttgaccttc gctcctgctg cgttgggtcc
     1381 tccttgtagt gggatccagc cggttctggc gctgtttagc cacaatgctg cagactggtt
     1441 cgctgtggtc aggtcgtcta tcgttatttg tggtttcggt ctgaggaggc gtttgaatcc
     1501 cctgctaaca taccattttt tggcaccgtc gaaaggtgcc accgggtctt gtgattggtc
     1561 tgcagtagtt ttaaatttca ttattctgga atcttggatt acggccgtgt ggccgaatcc
     1621 ctctggacta atggtgtagt ggccccatgt gggcctcatt tccattttag ctaacttaat
     1681 ccggtagtct tcgaaattca gtgttggtgg gttcggtgtg tttaggaagt ctgacaatgc
     1741 aaaggttatg tagtcagaat tccaaattag gttgccaggc tgggtggttt gtttcaaaat
     1801 ttggaatttg aattggcgtt tgaatctgag agtgtaaatt ctattggttg agaaacggcg
     1861 tttgcggaag tatctacgtc gccggcggta tcgcctgatg tgacgtctgc ggtagtatgg
     1921 gcgggtccat cttcgtctaa tctgaaatat agcgcatgcg cagttagagg tgccccacag
     1981 gcggcggtta g
//