LOCUS AY450438 2002 bp DNA circular VRL 15-AUG-2004 DEFINITION Beak and feather disease virus isolate CPA7, complete genome. ACCESSION AY450438 VERSION AY450438.1 KEYWORDS . SOURCE Beak and feather disease virus ORGANISM Beak and feather disease virus Viruses; ssDNA viruses; Circoviridae; Circovirus. REFERENCE 1 (bases 1 to 2002) AUTHORS Heath,L., Martin,D.P., Warburton,L., Perrin,M., Horsfield,W., Kingsley,C., Rybicki,E.P. and Williamson,A.L. TITLE Evidence of unique genotypes of beak and feather disease virus in southern Africa JOURNAL J. Virol. 78 (17), 9277-9284 (2004) PUBMED 15308722 REFERENCE 2 (bases 1 to 2002) AUTHORS Heath,L.E. and Rybicki,E.P. TITLE Direct Submission JOURNAL Submitted (27-OCT-2003) Molecular and Cell Biology, University of Cape Town, Private Bag, Rondebosch, Cape Town, Western Cape 7701, South Africa FEATURES Location/Qualifiers source 1..2002 /mol_type="genomic DNA" /db_xref="taxon:77856" /isolate="CPA7" /organism="Beak and feather disease virus" /host="Poicephalus robustus" gene 133..1002 /gene="rep" CDS 133..1002 /inference="non-experimental evidence, no additional details recorded" /codon_start=1 /protein_id="AAT00475.1" /gene="rep" /translation="MPSKEGSGCRRWCFTLNNLTDGEIEFVRSLGLDEFYYAIVGREK GEQGTPHLQGYFHFKNKKRLSALKIMLPRAHFERAKGSDADNEKYCSKEGDVILILGI VARDGHRAFDGAVAAVMSGRKMKEVAREFPDIYVRHGRGLHSLSLLVGSRPRDFKTEV DVIYGPPGCGKSRWANEQPGTKFYKMRGEWWDGYDGEEVVILDDFYGWLPYCEMLRLC DRYPHKVPVKGAFVEFTSKRIIITSNKPPADWYKEDCDPKPLFRRFTRVWWWDIDKLE QVRSDFLAHPINY" /product="putative replicase-associated protein" /note="REP; ORF1; similar to REP protein encoded by porcine circoviruses" misc_feature complement(1237..1986) /inference="non-experimental evidence, no additional details recorded" /note="similar to capsid protein genes of porcine circoviruses" ORIGIN 1 acccgccgcc tggggcaccg gggcaccgca gccagtggct gcggtgcccc aaccgcctcc 61 cctagggcgg agtaaatggc gccgttatac gggcgccgtt aatctccgga ggatcgcact 121 cggcccggaa ccatgccgtc caaggagggc tctggctgtc gccgttggtg ttttaccctt 181 aacaacctta cggacggcga gatcgaattc gtccgttctc tggggcttga cgaattctac 241 tatgccatcg ttggacggga aaagggcgag caaggtaccc cccatctgca aggctacttt 301 cattttaaaa ataagaagcg actgagcgcg cttaagataa tgctgccgcg agctcatttt 361 gagcgcgcta aagggagcga tgcggataat gagaagtatt gcagtaaaga gggggacgtt 421 atacttatcc tgggcattgt ggcgagagac ggtcaccgcg ctttcgacgg agctgttgct 481 gccgtgatgt ccggacgcaa aatgaaggaa gtcgcgcgag agttcccaga tatctacgtc 541 aggcatgggc ggggcttgca tagtctctcg ctattggtgg gttcccgccc acgtgacttc 601 aagactgagg ttgacgtcat ctacggacca ccggggtgtg gcaagagcag atgggccaat 661 gagcagcctg ggactaaatt ttataaaatg cgcggggaat ggtgggatgg atatgatggg 721 gaggaagtcg tcatcttgga cgacttttat gggtggctac cttattgcga gatgctccgg 781 ctctgcgacc gttacccaca taaagtgcca gttaagggcg cttttgtgga gtttacaagc 841 aagaggatca ttatcacgag caataagccc cccgcagact ggtacaagga ggactgtgac 901 ccgaagccac tgttccggag attcacccgt gtatggtggt gggacattga caagttggaa 961 caagtccggt ctgatttcct cgcccacccc atcaattatt gatcgtctcg gtgatgatta 1021 aaaaaagccg ggcgtcaggc cgaaggcctg atgccgcagg gcgggacgcc ctgccggagg 1081 ggtcgcaggg ccgtcaggcc cgagaccccg accagcccgg agggcctcgt ctgtgtcggg 1141 gggggggccc cggggagtcc ccccgacacg accaacacgg tcagcgccga aggcgccaat 1201 aaacactcga aaaggtattt gcagtttgag tctttattaa gtactgggat tgttgggggc 1261 aaactgacgg aattgaacat acagagtgag ctcgcataca taagtgattg tcacttccgg 1321 ctgagggaag ctgaatgcaa ggccgtagtg cttgacgttc gctcctgccg cattgggtcc 1381 tccttgtagt gggatccagc cggttctggc gctgtttagc cacaatgccg cagactggtt 1441 cgcagtggtc aggtcatcta tagttatttg aggtttcggt ctgaggaggc gtttgaatcc 1501 cctggcaaca taccactttt ttgcaccgtc gaaaggagcc actgggtctt gagtttggtc 1561 tgtagtagtc ttaaatttag ttattctgga atcttggatt atggccgtgt ggccgaatcc 1621 gtctgcacta attgtgtagt ggccccatgt gggcctcaat tccattttag ctaatttaat 1681 ccggtagtct tcgaaattta gtgtatgtgg gtttggcgct gttgctagga agtctgacaa 1741 tgcaaaggtt atgtagtcag aattccaaat tacttggcca gtactggtgg tttgctttcg 1801 aatgtcgaat ttgaattggc gtttgaatct gatagtgtaa attctattgg ttgagaaacg 1861 gcgtctgcgg aagtatctac gtcttcggcg gtatcgcctg ttgtgacgtc tgcggtagta 1921 tgggcgggca tatctacgtc gtctaatctg aaatatagcg catgcgcagt tagaggtgcc 1981 ccagcaggcg gcggttagta tt //