LOCUS JQ782197 1992 bp ss-DNA circular VRL 05-JUN-2012 DEFINITION Beak and feather disease virus isolate D134142, complete genome. ACCESSION JQ782197 VERSION JQ782197.1 KEYWORDS . SOURCE Beak and feather disease virus ORGANISM Beak and feather disease virus Viruses; ssDNA viruses; Circoviridae; Circovirus. REFERENCE 1 (bases 1 to 1992) AUTHORS Massaro,M., Ortiz-Catedral,L., Julian,L., Galbraith,J.A., Kurenbach,B., Kearvell,J., Kemp,J., van Hal,J., Elkington,S., Taylor,G., Greene,T., van de Wetering,J., van de Wetering,M., Pryde,M., Dilks,P., Heber,S., Steeves,T.E., Walters,M., Shaw,S., Potter,J., Farrant,M., Brunton,D.H., Hauber,M., Jackson,B., Bell,P., Moorhouse,R., McInnes,K. and Varsani,A. TITLE Molecular characterisation of beak and feather disease virus (BFDV) in New Zealand and its implications for managing an infectious disease JOURNAL Arch. Virol. (2012) In press PUBMED 22638639 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 1992) AUTHORS Varsani,A., Massaro,M., McInnes,K., Julian,L., Galbraith,J., Kurenbach,B., Greene,T., van de Wetering,J., van de Wetering,M., Pryde,M., Dilks,P. and Heber,S. TITLE Direct Submission JOURNAL Submitted (15-MAR-2012) School of Biological Sciences, University of Canterbury, Private Bag, Christchurch 8140, New Zealand COMMENT ##Assembly-Data-START## Assembly Method :: DNAMAN v. 5.2.9 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1992 /mol_type="genomic DNA" /country="New Zealand" /collection_date="2009" /host="Platycercus eximius" /db_xref="taxon:77856" /isolate="D134142" /organism="Beak and feather disease virus" CDS 131..1000 /codon_start=1 /protein_id="AFL02435.1" /translation="MPSKEGSGCRRWCFTLNNPTDGEIEFVRTLGPDEFYYAIVGREK GEQGTPHLQGYFHFKSKKRLSALKKMLPRAHFERAKGSDADNEKYCSKEGDVILTLGI VARDGHRAFDGAVAAVMTGCKMKEVAREFPHIYVRHGRGLHNLSLLVGSRPRDFKTEV DVIYGPPGCGKSRWANEQPGTKYYKMRGEWWDGYDGEDVVVLDDFYGWLPYCEMLRLC DRYPHKVPVKGAFVEFTSKRIIITSNKPPETWYKEDCDPKPLFRRFTRVWWYNIDKLE QVRPDLLAHPINF" /product="replication associated protein" CDS complement(1235..>1969) /codon_start=1 /protein_id="AFL02436.1" /translation="SNCACATFQIRRRYARPYYRRRQFRRYRRRRRHFRRRRFTTNRI YTLRLTRQFKFQIQKQTTSTGNLIFNSDYITFALSDFLTNTPNPQTLNFEDYRIKLAK MEMRPTWGHYTIAADGFGHTAIIQDSRITKFKTTADQTQDPLAPFDGAKKWYVSRGFK RLLRPKPQITINDLATANQSAALWLNSARTGWIPLQGGPNAAGAKVKHYGIAFSFPQP EQTITYITKLTLDVQFRQFAPNNPST" /product="capsid protein" /note="TCT (serine) codon appears to be the translation initiation codon" ORIGIN 1 tattacccgc cgcctggggc accggggcac cgcagccatt ggctgtaggt ccccggtgcc 61 cgcccctagg gaggagaaaa cgacgccgtt aggcgtcgta atctccggag gatcacactc 121 gcccggaact atgccgtcca aggagggctc tggctgtcgc cgttggtgtt tcacccttaa 181 caaccctacg gacggtgaga tcgaattcgt ccgtactctc gggcctgacg aattctacta 241 tgccatcgtt ggacgggaaa agggcgagca aggtaccccc catttgcaag gctactttca 301 ttttaaaagt aagaagcgac ttagcgcgct taagaaaatg ctgccgcgag ctcattttga 361 acgcgctaaa gggagcgatg cggataatga gaagtattgc agtaaagagg gcgatgttat 421 acttaccctt ggcattgtgg cgagagacgg tcaccgcgct ttcgacggag ctgttgctgc 481 cgtgatgacc ggatgcaaaa tgaaggaagt cgcgcgagag ttcccacata tctacgtcag 541 acatgggcgg ggcttgcata acctgtctct attggttggt tcccgcccac gtgatttcaa 601 gacggaggtt gacgtaatct acgggccacc ggggtgtggc aagagtagat gggccaatga 661 acagccgggg actaaatatt ataaaatgcg cggtgaatgg tgggatgggt atgatgggga 721 agatgtcgtc gtattggacg acttttatgg gtggttacct tattgcgaga tgctccgcct 781 atgcgaccgt tacccacata aagtgccagt aaaaggcgct tttgttgagt ttacgagcaa 841 gaggatcatt atcacgagca ataagccccc cgagacttgg tacaaggagg actgtgaccc 901 gaagccactg ttccggagat tcactcgtgt gtggtggtac aacattgaca agttggaaca 961 agtccggcct gatctcctcg cccaccctat caatttttga cagtcccgga gatgattaat 1021 aaaagttagg cgtcaggccg aaggcctgat gccgcagggc gggacgccct gccggagggc 1081 tcgtagggcc gtcaggcccg agagcccgac cagcccggag ggcctcgtct gtgtcggggg 1141 gggggccccg gggggtcccc ccgacacgac caacacggta gcgccgaagg cgccaaataa 1201 caactggaaa aggtatttgt tgtctgagtt tttattaagt actgggatta ttaggggcaa 1261 actgacggaa ttggacatcc aaagtgagtt tggtaatata agtgatcgtt tgttctggct 1321 gagggaagct gaaggcaatt ccgtagtgct tgactttcgc tcctgctgcg ttgggtcctc 1381 cttgtagtgg gatccagccg gttctggcgc tgtttagcca caatgccgca gactggttcg 1441 ctgtggccag gtcgtttatc gttatttgtg gtttcggtct gaggagtcgt ttgaatcccc 1501 tgctaacata ccactttttg gcaccgtcga aaggtgccag ggggtcttgg gtttggtctg 1561 cagtagtttt aaatttagta attctagagt cttggattat ggccgtatgg ccgaatccgt 1621 ctgcagctat tgtgtagtgg ccccatgtgg gccgcatttc cattttagct aacttaattc 1681 ggtagtcttc gaaatttagt gtttgtgggt ttggtgtgtt tgttaggaag tctgacaatg 1741 caaaggtaat gtagtcagaa ttaaaaatga ggttgccagt actggtggtt tgtttttgaa 1801 tttggaattt gaattggcgt gtgagtctga gagtgtaaat tctattggtt gtgaaacggc 1861 gtctgcggaa gtgtctgcgt cgccggcggt atcgccggaa ttgacgtctg cggtagtatg 1921 ggcgggcata tcttcttcta atctgaaatg tagcgcatgc gcagttagag gtgccccaca 1981 ggcggcggtt ag //