LOCUS       JQ782198                1984 bp    ss-DNA  circular VRL 05-JUN-2012
DEFINITION  Beak and feather disease virus isolate D134144, complete genome.
ACCESSION   JQ782198
VERSION     JQ782198.1
KEYWORDS    .
SOURCE      Beak and feather disease virus
  ORGANISM  Beak and feather disease virus
            Viruses; ssDNA viruses; Circoviridae; Circovirus.
REFERENCE   1  (bases 1 to 1984)
  AUTHORS   Massaro,M., Ortiz-Catedral,L., Julian,L., Galbraith,J.A.,
            Kurenbach,B., Kearvell,J., Kemp,J., van Hal,J., Elkington,S.,
            Taylor,G., Greene,T., van de Wetering,J., van de Wetering,M.,
            Pryde,M., Dilks,P., Heber,S., Steeves,T.E., Walters,M., Shaw,S.,
            Potter,J., Farrant,M., Brunton,D.H., Hauber,M., Jackson,B.,
            Bell,P., Moorhouse,R., McInnes,K. and Varsani,A.
  TITLE     Molecular characterisation of beak and feather disease virus
            (BFDV) in New Zealand and its implications for managing an
            infectious disease
  JOURNAL   Arch. Virol. (2012) In press
   PUBMED   22638639
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 1984)
  AUTHORS   Varsani,A., Massaro,M., McInnes,K., Julian,L., Galbraith,J.,
            Kurenbach,B., Greene,T., van de Wetering,J., van de Wetering,M.,
            Pryde,M., Dilks,P. and Heber,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-MAR-2012) School of Biological Sciences, University
            of Canterbury, Private Bag, Christchurch 8140, New Zealand
COMMENT     ##Assembly-Data-START## Assembly Method :: DNAMAN v. 5.2.9
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1984
                     /mol_type="genomic DNA"
                     /country="New Zealand"
                     /collection_date="2009"
                     /host="Platycercus eximius"
                     /db_xref="taxon:77856"
                     /isolate="D134144"
                     /organism="Beak and feather disease virus"
     CDS             131..997
                     /codon_start=1
                     /protein_id="AFL02437.1"
                     /translation="MPSKEGSGCRRWCFTLNNPTDGEIEFVRTLGPDEFYYAIVGREK
                     GEQGTPHLQGYFHFKSKKRLSALKKMLPRAHFERAKGSDADNEKYCSKEGDVILTLGI
                     VARDGHRAFDGAVAAVMSGRKMKEVAREFPDIYVRHGRGLHSLSLLVGSRPRDFKTEV
                     DVIWGPPGCGKSRWANEQPGTKYYKMRGEWWDGYDGEDIVVIDDFYGWLPYCEMLRLC
                     DRYPHKVPVKGAFVEFTSKRIIITSNKPPETWYKEDCDPKPLFRRFTRVWWYTDKLEQ
                     VRPDFLAHPINF"
                     /product="replication associated protein"
     CDS             complement(1224..>1961)
                     /codon_start=1
                     /protein_id="AFL02438.1"
                     /translation="SNCACATFQIRRRYARPYYRRRHFRRYRRRRRHFRRRRFTTNRI
                     YTLRLTRQFKFQIQKQTTSTGNLIFNSDYITFALSDFLTNTPNPQTLNFEDYRIKLAK
                     MEMRPTWGHYTIAADGFGHTAIIQDSRITKFKTTADQTQDPLAPFDGAKKWYVSRGFK
                     RLLRPKPQITINDLATANQSAALWLNSARTGWIPLQGGPNAAGAKVKHYGIAFSFPQP
                     EQTITYITKLTLDVQFRQFAPNNPSTY"
                     /product="capsid protein"
                     /note="TCT (serine) codon appears to be the translation
                     initiation codon"
ORIGIN      
        1 tattacccgc cgcctggggc accggggcac cgcagccatt ggctgtaggt ccccggtgcc
       61 cgcccctagg gaggagaaaa cgacgccgtt aggcgtcgta atctccggag gatcacactc
      121 gcccggaact atgccgtcca aggagggctc tggctgtcgc cgttggtgtt tcacccttaa
      181 caaccctacg gacggtgaga tcgaattcgt ccgtactctc gggcctgacg aattctacta
      241 tgccatcgtt ggacgggaaa agggcgagca aggtaccccc catttgcaag gctactttca
      301 ttttaaaagt aagaagcgac ttagcgcgct taagaaaatg ctgccgcgag ctcattttga
      361 acgcgctaaa gggagcgatg cggataatga gaagtattgc agtaaagagg gcgacgtaat
      421 acttaccctg ggcattgtgg cgagagacgg tcaccgcgct ttcgacggag ctgttgctgc
      481 cgtgatgtcc ggacgcaaaa tgaaggaagt cgcgcgagag ttcccagata tctacgtcag
      541 gcatgggcgg ggcttgcata gcctgtcgct attggtcggt tcccgcccac gtgacttcaa
      601 gactgaggtc gacgttatct gggggcctcc ggggtgtggc aagagccgat gggccaatga
      661 gcagcccgga actaaatatt ataaaatgcg tggtgaatgg tgggatggat atgatgggga
      721 agatatcgtc gtcattgatg acttttatgg gtggctacct tattgcgaga tgctccgcct
      781 ctgcgaccgt tacccacata aggtgccagt taagggcgcc tttgtggagt ttaccagcaa
      841 gaggatcatt attacgagta ataagccccc cgagacctgg tacaaggagg actgtgaccc
      901 gaagccactg ttccggagat tcacccgtgt ttggtggtac acggacaagt tggaacaagt
      961 ccggcctgat ttcctcgctc atcccatcaa tttttgacag tcccggtgat gtttaataaa
     1021 gttaggcgtc gggccgaagg cccgatgccg cagggcggga cgccctgccg gagggctcgg
     1081 agggccgtca ggcccgagag cccgaccagc ccggagggcc tcgtctgtgc cggggggggc
     1141 cccggggggt ccccccgaca cgaccaacac ggtagcgccg aaggcgccaa taaaacctga
     1201 aaaggtattt gttgtctgag tctttaataa gtactgggat tgttgggggc aaactggcgg
     1261 aattggacat ccaaagtgag tttggtaata taagtgatcg tttgttctgg ctgagggaag
     1321 ctgaaggcaa ttccgtagtg cttgactttc gctcctgctg cgttgggtcc tccttgtagt
     1381 gggatccagc cggttctggc gctgtttagc cacaatgccg cagactggtt cgctgtggcc
     1441 aggtcgttta tcgttatttg tggtttcggt ctgaggagtc gtttgaatcc cctgctaaca
     1501 taccactttt tggcaccgtc gaaaggtgcc agggggtctt gggtttggtc tgcagtagtt
     1561 ttaaatttag taattctaga gtcttggatt atggccgtat ggccgaatcc gtctgcagct
     1621 attgtgtagt ggccccatgt gggccgcatt tccattttag ctaacttaat tcggtagtct
     1681 tcgaaattta gtgtttgtgg gtttggtgtg tttgttagga agtctgacaa tgcaaaggta
     1741 atgtagtcag aattaaaaat gaggttgcca gtactggtgg tttgtttttg aatttggaat
     1801 ttgaattggc gtgtgagtct gagagtgtaa attctattgg ttgtgaaacg gcgtctgcgg
     1861 aagtgtctgc gtcgccggcg gtatcgccgg aagtgacgtc tgcggtagta tgggcgggca
     1921 tatcttcttc taatctgaaa tgtagcgcat gcgcagttag aggtgcccca caggcggcgg
     1981 ttag
//