LOCUS AY450441 2002 bp DNA circular VRL 15-AUG-2004 DEFINITION Beak and feather disease virus isolate GJP1-ZA, complete genome. ACCESSION AY450441 VERSION AY450441.1 KEYWORDS . SOURCE Beak and feather disease virus ORGANISM Beak and feather disease virus Viruses; ssDNA viruses; Circoviridae; Circovirus. REFERENCE 1 (bases 1 to 2002) AUTHORS Heath,L., Martin,D.P., Warburton,L., Perrin,M., Horsfield,W., Kingsley,C., Rybicki,E.P. and Williamson,A.L. TITLE Evidence of unique genotypes of beak and feather disease virus in southern Africa JOURNAL J. Virol. 78 (17), 9277-9284 (2004) PUBMED 15308722 REFERENCE 2 (bases 1 to 2002) AUTHORS Heath,L.E. and Rybicki,E.P. TITLE Direct Submission JOURNAL Submitted (27-OCT-2003) Molecular and Cell Biology, University of Cape Town, Private Bag, Rondebosch, Cape Town, Western Cape 7701, South Africa FEATURES Location/Qualifiers source 1..2002 /mol_type="genomic DNA" /db_xref="taxon:77856" /isolate="GJP1-ZA" /organism="Beak and feather disease virus" /host="Poicephalus gulielmi" gene 133..1002 /gene="rep" CDS 133..1002 /inference="non-experimental evidence, no additional details recorded" /codon_start=1 /protein_id="AAT00478.1" /gene="rep" /translation="MPSKEGSGCRRWCFTLNNPTDGEIEFVRSLGPDEFYYAIVGREK GEQGTPHLQGYFHFKNKKRLSALKKMLPRAHFERANGSDADNEKYCSKEGDVILTLGI VARDGHRAFDGAVAAVMSGRKMTEVAREFPDIYVRHGRGLHSLSLLVGSRPRDFKTEV DVIYGPTGCGKSRWANEQPGTKFYKMRGEWWDGYDGEEVVILDDFYGWLPYCEMLRLC DRYPHKVPVKGAFVEFTGKRIIITSNKPPADWYKEDCDPKPLFRRFTRVWWWDIGKLE QVRSDFLAHPINY" /product="putative replicase-associated protein" /note="REP; ORF1; similar to REP protein encoded by porcine circoviruses" misc_feature complement(1237..1986) /inference="non-experimental evidence, no additional details recorded" /note="similar to capsid protein genes of porcine circoviruses" ORIGIN 1 acccgccgcc tggggcaccg gggcaccgca gccagtggct gcggtgcccc aaccgcctcc 61 cctagggcgg agtaaatggc gccgttatac gggcgccgtt aatctccggg ggatcacact 121 cgcccgggaa ccatgccgtc caaggagggc tctggctgtc gccgttggtg ttttaccctt 181 aacaacccta cggacggcga gatcgaattc gtccgttctc tggggcctga cgaattctac 241 tatgccatcg ttggacggga aaagggcgag caaggtaccc cccatctgca aggctacttt 301 cattttaaaa ataagaagcg actgagcgcg cttaagaaaa tgctgccgcg agctcatttt 361 gagcgcgcta acgggagcga tgcggataat gagaagtatt gcagtaaaga gggggacgtt 421 atacttaccc tgggcattgt ggcgagagac ggtcaccgcg ctttcgacgg agctgttgct 481 gccgtgatgt ccggacgcaa aatgacggaa gtcgcgcgag agttcccaga tatctacgtc 541 aggcatgggc ggggcttgca tagtctctcg ctattggtgg gttcccgccc acgtgacttc 601 aagactgagg ttgacgtcat ctacggacca acggggtgtg gcaagagcag atgggccaat 661 gagcagcctg ggactaaatt ttataaaatg cgcggggaat ggtgggatgg gtatgatggg 721 gaggaagtcg tcattttgga cgacttttat gggtggctac cttattgcga gatgctccgg 781 ctctgcgacc gttacccaca taaagtgcca gttaagggcg cttttgtgga gtttacaggt 841 aagaggatca ttatcacgag caataagccc cccgcagact ggtacaagga ggactgtgac 901 ccgaagccac tgttccggag attcacccgt gtatggtggt gggacattgg caagttggaa 961 caagtccggt ctgatttcct cgcccacccc atcaattatt gatcgtctcg gtgatgatta 1021 aaaaaagccg ggcgtcaggc cgaaggcctg atgccgcagg gcgggacgcc ctgccggagg 1081 ggtcgcaggg ccgtcaggcc cgagaccccg accagcccgg agggcctcgt ctgtgtcggg 1141 gggggggccc cggggggtcc ccccgacacg accaacacgg tcagcgccga aggcgccaat 1201 aaacactcga aaaggtattt gcagtttgag tctttattaa gtactgggat tgttgggggc 1261 aaactgacgg aattgaacat acagagtgag ctcgcataca taagtgattg tcacttctgg 1321 ctgagggaag ctgaatgcaa ggccgtagtg cttgacgttc gctcctgccg cattgggtcc 1381 tccttgtagt gggatccagc cggttctggc gctgtttagc cacaatgccg cagactggtt 1441 cgcagtggtc aggtcatcta tagttatttg aggtttcggt ctgaggaggc gtttgaatcc 1501 cctggcaaca taccactttt ttgcaccgtc gaaaggagcc actgggtctt gagtttggtc 1561 tgtagtagtc ttaaatttag ttattctgga atcttggatt atggccgtgt ggccgaatcc 1621 gtctgcacta attgtgtagt ggccccatgt gggcctcatt tccattttag ctaatttaat 1681 ccggtagtct tcgaaattta gtgtatgtgg gtttggcgct gttgctagga agtctgacaa 1741 tgcaaaggtt atgtagtcag aattccaaat tacttggcca gtactggtgg tttgctttcg 1801 aatcacgaat ttgaattggc gtttgaatct gatagtgtaa attctattgg ttgagaaacg 1861 gcgtctgcgg aagtatctac gtcttcggcg gtatcgcctg ttgtgacgtc tgcggtagta 1921 tgggcgggca tatctgcgtc gtctaatctg aaatatagcg catgcgcagt tagaggtgcc 1981 ccagcaggcg gcggttagta tt //