LOCUS EU810208 1992 bp DNA circular VRL 05-OCT-2010 DEFINITION Beak and feather disease virus isolate PT05, complete genome. ACCESSION EU810208 VERSION EU810208.1 KEYWORDS . SOURCE Beak and feather disease virus ORGANISM Beak and feather disease virus Viruses; ssDNA viruses; Circoviridae; Circovirus. REFERENCE 1 (bases 1 to 1992) AUTHORS Henriques,A.M., Fagulha,T., Duarte,M., Ramos,F., Barros,S., Luis,T., Bernardino,R. and Fevereiro,M. TITLE Phylogenetic analysis of six isolates of beak and feather disease virus from African grey parrots in Portugal JOURNAL Avian Dis. 54 (3), 1066-1071 (2010) PUBMED 20945789 REFERENCE 2 (bases 1 to 1992) AUTHORS Henriques,A.M. and Fevereiro,M. TITLE Direct Submission JOURNAL Submitted (09-JUN-2008) Virologia, Laboratorio Nacional de Investigacao Veterinaria, Estrada de Benfica 701, Lisboa 1549-011, Portugal FEATURES Location/Qualifiers source 1..1992 /mol_type="genomic DNA" /country="Portugal" /isolation_source="bursa and liver" /collection_date="2005" /host="Psittacus erithacus" /db_xref="taxon:77856" /isolate="PT05" /organism="Beak and feather disease virus" stem_loop join(1976..1984,3..11) repeat_region 12..19 /rpt_unit_seq="ggggcacc" /rpt_type=direct /note="octamer repeats" repeat_region 13..18 /rpt_unit_seq="gggcac" /rpt_type=direct /note="hexamer repeat" repeat_region 20..27 /rpt_unit_seq="ggggcacc" /rpt_type=direct /note="octamer repeats" repeat_region 21..26 /rpt_unit_seq="gggcac" /rpt_type=direct /note="hexamer repeat" repeat_region 52..57 /rpt_unit_seq="gtgccc" /rpt_type=direct /note="hexamer repeat" CDS complement(63..560) /codon_start=1 /protein_id="ACF47580.1" /translation="MQAPPMPDVDIWELSRDFLHFASGHHGSNSSIESAVTVSRHNAQ SKYYVPLFTAILLILRIAPPSSLKMRSRQHFLKRAQSLLIFKMKVPLQMAGTLLARFP SNDGIVEFVRPERTDEFDLAVCRVVKGETPTATARALLGRHGSRASMILRRLRRRITA PFAPP" /product="unknown" /note="ORF3; 18.5 kDa predicted protein" regulatory 86..89 /regulatory_class="TATA_box" /note="putative" CDS 132..998 /codon_start=1 /protein_id="ACF47578.1" /translation="MPSKEGSGCRRWCFTLNNPTDGEIEFVRSLGPDEFYYAIVGRET GEQGTRHLQGYFHFKDKKRLSALKKMLPRAHFERARGSDAENEKYCSKEGDVILTLGI VARDGHRAFDGAVAAVMSGRKMKEVAREFPDIYVRHGRGLHNLSLMVGSSPRDFKTEV DVIYGPPGCGKSRWANEQPGTKYYKMRGEWWDGYDGEDVVILDDFYGWLPYCEMLRLC DRYPHKVPVKGAFVEFVSKRIIITSNKPPETWYKEDCDPKPLFRRFTRVWWYTDKLEE VRPDFLAHPINY" /product="putative replication-associated protein" /note="Rep" CDS 622..849 /codon_start=1 /protein_id="ACF47581.1" /translation="MDRRGVARADGPMNSLGLNIIKCAVNGGMDMMGKMLSSWTTFMG GYLIARCSASATVTHTKCPLRAPLWSLSARG" /product="unknown" /note="ORF5; 8.0 kDa predicted protein" regulatory 681..687 /regulatory_class="TATA_box" /note="putative" regulatory 1016..1021 /regulatory_class="polyA_signal_sequence" regulatory 1192..1197 /regulatory_class="polyA_signal_sequence" regulatory 1228..1233 /regulatory_class="polyA_signal_sequence" CDS complement(1231..1977) /codon_start=1 /protein_id="ACF47579.1" /translation="MWGTSNCACAIFQIRRRWSRPYYRRRHNRRYRRRRRYFRRRRFT TNRIYTIRLKRQFKFQIQKQTTSTGNVIWNSDYITFALSDFLSNTPNPPTLNFEDYRI KLAKMEMRPTWGHYSISSDGFGHTAVIQDSRITKFKTTADQTQDPVAPFDGAKKWYVS RGFKRLLRPKPQITIDDLTTANQSAALWLNSARTGWIPLQGGPNAAGSKVKHYGLAFS FPQPEVTITYVCQLTLYVQLRQFAPNNPST" /product="capsid protein" /note="Cap; ORF2" repeat_region 1966..1973 /rpt_unit_seq="ggtgcccc" /rpt_type=direct /note="octamer repeat" repeat_region 1967..1972 /rpt_unit_seq="gtgccc" /rpt_type=direct /note="hexamer repeat" ORIGIN 1 acccgccgcc tggggcaccg gggcaccgca gccattggct gccgtgctga ggtgccctgc 61 ccctagggag gagcaaatgg cgccgttata cggcgccgta atctccggag gatcatactc 121 gcccgggaac catgccgtcc aaggagggct ctggctgtcg ccgttggtgt ttcaccctta 181 acaaccctac agacggcgag atcgaattcg tccgttctct cgggcctgac gaattctact 241 atgccatcgt tggacgggaa acgggcgagc aaggtacccg ccatttgcaa gggtactttc 301 attttaaaga taagaagcga ctgagcgcgc ttaagaaaat gctgccgcga gcgcattttg 361 agcgagctag ggggagcgat gcggagaatg agaagtattg cagtaaagag ggggacgtaa 421 tacttactct gggcattgtg gcgagagacg gtcaccgcgc tttcgatgga gctgttgctg 481 ccgtgatgtc cggacgcaaa atgaaggaag tcgcgcgaga gttcccagat atctacgtca 541 ggcatgggcg gggcttgcat aatctttcgc taatggttgg ttccagtcca cgtgacttca 601 agactgaggt tgacgtgatc tatggaccgc cggggtgtgg caagagcaga tgggccaatg 661 aacagcctgg gactaaatat tataaaatgc gcggtgaatg gtgggatgga tatgatgggg 721 aagatgttgt catcttggac gacttttatg ggtggctacc ttattgcgag atgctccgcc 781 tctgcgaccg ttacccacac aaagtgcccg ttaagggcgc ctttgtggag tttgtcagca 841 agaggataat tatcacgagc aataagcccc ccgagacctg gtacaaggag gactgtgacc 901 cgaagccact gttccggaga ttcactcgtg tttggtggta cactgacaag ttggaagaag 961 tccggcctga tttcctcgcc caccccatca attattgatc gtttcggtga tgtttaataa 1021 atttaggcgt cgggcctttg gcccgatgcc gcaggggggg accccctgcc ggagggctcg 1081 cagggccgtc aggcccgaga gaccgaccag cccggagggc ctcgtctgtg tcgggggggg 1141 ggccccgggg ggtccccccg acacgaccaa cacggtagcg ccgaaggcgc caataaacac 1201 tcgaaaaggt attttgtgtt tgagtcttta ttaagtgctc ggattgttag gggcaaactg 1261 acggagttga acatacaaag tgagctgaca tacataagtg atcgttactt ctggctgagg 1321 gaagctgaag gcaaggccgt agtgcttgac tttcgatcct gctgcgttgg gtcctccttg 1381 tagtgggatc catccggttc tggcgctgtt tagccacaat gctgcagact ggttcgctgt 1441 ggtcaggtcg tctattgtta tttgtggttt cggtctgagg aggcgtttga atcccctgct 1501 aacataccat tttttggcac cgtcgaaagg tgccactggg tcttgtgttt ggtctgcagt 1561 agttttaaat ttagttattc ttgaatcttg gattacggcc gtgtggccga atccgtctga 1621 actaatggag tagtggcccc atgtgggcct catttccatt ttagctaact taatccggta 1681 gtcttcgaaa ttcagtgttg gtgggtttgg tgtgtttgat aggaagtctg acaatgcaaa 1741 ggttatgtag tcagaattcc aaattacgtt gccagtactg gtggtttgtt tttgaatttg 1801 gaatttgaat tggcgtttga gtcggattgt gtaaattcta ttggttgtga agcggcgtct 1861 gcggaagtat ctacgtcgcc ggcggtatcg cctgttgtga cgtctgcggt agtatgggcg 1921 ggaccatctt cgtctaatct gaaatatagc gcatgcgcag ttagaggtgc cccacaggcg 1981 gcggttagta tt //