LOCUS GQ329705 2000 bp DNA circular VRL 05-OCT-2010 DEFINITION Beak and feather disease virus isolate PT09, complete genome. ACCESSION GQ329705 VERSION GQ329705.1 KEYWORDS . SOURCE Beak and feather disease virus ORGANISM Beak and feather disease virus Viruses; ssDNA viruses; Circoviridae; Circovirus. REFERENCE 1 (bases 1 to 2000) AUTHORS Henriques,A.M., Fagulha,T., Duarte,M., Ramos,F., Barros,S., Luis,T., Bernardino,R. and Fevereiro,M. TITLE Phylogenetic analysis of six isolates of beak and feather disease virus from African grey parrots in Portugal JOURNAL Avian Dis. 54 (3), 1066-1071 (2010) PUBMED 20945789 REFERENCE 2 (bases 1 to 2000) AUTHORS Henriques,A.M. and Fevereiro,M. TITLE Direct Submission JOURNAL Submitted (25-JUN-2009) Virologia, Laboratorio Nacional de Investigacao Veterinaria, Estrada de Benfica 701, Lisboa 1549-011, Portugal FEATURES Location/Qualifiers source 1..2000 /mol_type="genomic DNA" /country="Portugal" /isolation_source="liver; spleen; lungs" /collection_date="2009" /host="Psittacus erithacus" /db_xref="taxon:77856" /isolate="PT09" /organism="Beak and feather disease virus" stem_loop join(1985..1992,3..10) repeat_region 12..19 /rpt_unit_seq="ggggcacc" /note="octamer repeat" repeat_region 13..18 /rpt_unit_seq="gggcac" /note="hexamer repeat" repeat_region 20..27 /rpt_unit_seq="ggggcacc" /note="octamer repeat" repeat_region 21..26 /rpt_unit_seq="gggcac" /note="hexamer repeat" repeat_region 43..50 /rpt_unit_seq="ggtgcccc" /note="octamer repeat" repeat_region 44..49 /rpt_unit_seq="gtgccc" /note="hexamer repeat" CDS complement(62..559) /codon_start=1 /protein_id="ACT82480.1" /translation="MQAPPMPDVDIWELSRDFLHFASGHHGSNSSVESAVTVSRHNAQ GKYHIPLFTAILLIVRIAPFSALKMSSRQKFLKRAQSLLIFKMKVALQMGGTLLALFP SNDGIVEFVRPESTDEFDLAVCRIVKGETPTATARALLGRHGSRASVILRRPRRRITA PFSPP" /product="putative 18.3 kDa protein" /note="ORF3" regulatory 86..89 /regulatory_class="TATA_box" /note="putative" CDS 131..1000 /codon_start=1 /protein_id="ACT82481.1" /translation="MPSKEGSGCRRWCFTLNNPTDGEIEFVRTLGPDEFYYAIVGREK GEQGTPHLQGYFHFKNKKRLSALKKFLPRAHFERAKGSDADNEKYCSKEGDVILTLGI VARDGHRAFDGAVAAVMSGRKMKEVAREFPDIYVRHGRGLHNLSLLVGSRPRDFKTEV DVIYGPPGCGKSRWANEQPGTKYYKMRGEWWDGYDGEEVVVLDDFYGWLPYCEMLRLC DRYPHKVPVKGAFVEFTSKRIIITSNKPPETWYKEDCDPKPLFRRFTRVWWYNVDKLE QVRPDFLAHPINF" /product="Rep" /note="putative 33.5 kDa replication-associated protein; ORF1" CDS 543..1013 /codon_start=1 /protein_id="ACT82482.1" /translation="MGGACITSRYWLVPAHVISRLRLTSSTDHRGVAKVDGPMSSLGL NIIKCAVNGGMDMMVRKSSYWTTFMGGYLIARCSASATVTHIKCQLRARLWSLRARGS LLRAISPQRPGTRRTVTRSHSSGDSLVFGGIMWTSWNKSGLISSPTPSIFRASR" /product="putative 17.0 kDa protein" /note="ORF5" regulatory 680..686 /regulatory_class="TATA_box" /note="putative" regulatory 938..941 /regulatory_class="TATA_box" /note="putative" CDS complement(1034..1300) /codon_start=1 /protein_id="ACT82483.1" /translation="MYVSSLCMFNSVSLPLTIPALNKDSDNKYLFESLFGAFGATVLV VSGGPPGAPPPTQTRPSGLVGLSGLTALRALRQGVPPCGIRPSA" /product="putative 9.0 kDa protein" /note="ORF7" CDS 1050..1388 /codon_start=1 /protein_id="ACT82484.1" /translation="MPQGGTPCRRARRAVRPESPTSPEGLVCVGGGAPGGPPDTTNTV APKAPNKLSKRYLLSESLLSAGIVRGKLTELNIQSELTYISDRYFWLREAEGKAVVLD VRSCRVGSSL" /product="putative 11.9 kDa protein" /note="ORF4" regulatory 1197..1202 /regulatory_class="polyA_signal_sequence" /note="putative" regulatory 1232..1237 /regulatory_class="polyA_signal_sequence" /note="putative" CDS complement(1236..1985) /codon_start=1 /protein_id="ACT82485.1" /translation="MWGTSNCACATFQIRRRYARPYYRRRHIRRYRLRRRRHFRRRRF TTNRIYTLRFKRQFKFQINKNTTQPSNVIWNSDYVTFTLSDFLTNTPNPPTLNFEDYR IKLAKMEMRPTWGHYTISSDGFGHTAVIQDSRITKFKTTADQTQDPLAPFDGAKKWFI SRGFKRLLRPKPQITINDLTTANQSAALWLNSVRTGWIPLQGGPNAAGANVKHYGLAF SFPQPEVTITYVCQLTLYVQFRQFAPNNPST" /product="putative 29.3 kDa capsid protein" /transl_except=(pos:complement(1983..1985),aa:Met) /note="Cap; ORF2" regulatory 1456..1461 /regulatory_class="polyA_signal_sequence" /note="putative" repeat_region 1974..1981 /rpt_unit_seq="ggtgcccc" /note="octamer repeat" repeat_region 1975..1980 /rpt_unit_seq="gtgccc" /note="hexamer repeat" ORIGIN 1 acccgccgcc tggggcaccg gggcaccgca gccattggct gcggtgcccc aacccctccc 61 actagggcgg agagaatggc gccgttatac ggcgccgtgg tctccggagg atcacactcg 121 ctcgggaacc atgccgtcca aggagggctc tggctgtcgc cgttggtgtt tcacccttaa 181 caatcctaca gacggcgaga tcgaattcgt ccgtactctc gggcctgacg aattctacta 241 tgccatcgtt ggacgggaaa agggcgagca aggtaccccc catttgcaag gctactttca 301 ttttaaaaat aagaagcgac tgagcgcgct taagaaattt ctgccgcgag ctcattttga 361 gcgcgctaaa gggagcgatg cggacaatga gaagtattgc agtaaagagg gggatgtgat 421 acttaccctg ggcattgtgg cgagagacgg tcaccgcgct ttcgacggag ctgttgctgc 481 cgtgatgtcc ggacgcaaaa tgaaggaagt cgcgcgagag ttcccagata tctacgtcag 541 gcatgggcgg ggcttgcata acctctcgct attggttggt tcccgcccac gtgatttcaa 601 gactgaggtt gacgtcatct acggaccacc ggggtgtggc aaaagtagat gggccaatga 661 gcagcctggg actaaatatt ataaaatgcg cggtgaatgg tgggatggat atgatggtga 721 ggaagtcgtc gtattggacg acttttatgg gtggctacct tattgcgaga tgctccgcct 781 ctgcgaccgt tacccacata aagtgccagt taagggcgcg tttgtggagt ttacgagcaa 841 gaggatcatt attacgagca ataagccccc agagacctgg tacaaggagg actgtgaccc 901 gaagccactc ttccggagat tcactcgtgt ttggtggtat aatgtggaca agttggaaca 961 agtccggcct gatttcctcg cccaccccat caatttttag agcgtctcgg tgatgattaa 1021 aaaaggccgg gcgtcaggcc gaaggcctga tgccgcaggg cgggacgccc tgccggaggg 1081 ctcgcagggc cgtcaggccc gagagcccga ccagcccgga gggcctcgtc tgtgtcgggg 1141 ggggggcccc ggggggtccc cccgacacga ccaacacggt agcgccgaag gcgccaaata 1201 aactctcgaa aaggtatttg ttgtctgagt ctttattaag tgctgggatt gttaggggca 1261 aactgacgga attgaacata caaagtgagc tgacatacat aagtgatcgt tacttctggc 1321 tgcgggaagc tgaaggcaag gccgtagtgc ttgacgttcg ctcctgccgc gttgggtcct 1381 ccttgtagtg ggatccagcc ggttctgacg ctgttcagcc acaatgctgc agactggttc 1441 gctgtggtca ggtcgtttat tgttatttgt ggttttggtc tgaggaggcg tttgaatccc 1501 ctgctgataa accatttttt ggcaccgtca aaaggtgcca gtgggtcttg tgtttggtct 1561 gcagtagttt taaatttagt tattctggag tcttggatta cggccgtgtg gccgaatccg 1621 tctgaactaa tggtgtagtg gccccatgtg ggcctcattt ccattttagc taacttaatt 1681 cggtagtctt cgaaattaag tgttggtggg ttcggtgtgt ttgttaggaa gtctgacaat 1741 gtgaaggtaa cgtagtcaga gttccatatt acgttgctag gttgtgttgt gtttttgtta 1801 atttggaatt tgaactggcg tttgaatctg agagtgtaaa ttctattggt cgtgaaacgg 1861 cgtctgcgga agtgtctacg tcgtcgtagg cggtatcgcc tgatgtgacg tctacggtag 1921 tatgggcggg catatcttcg tctaatctga aatgtagcgc atgcgcagtt agaggtgccc 1981 caacggcggc ggttagtatt //